RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CASKIN1Q8WXD9 1431 aa15.89■□□□□ 0.14
HMGB1-206ENST00000405805 DNMBPQ6XZF7 1577 aa15.89■□□□□ 0.13
HMGB1-206ENST00000405805 SENP3Q9H4L4 574 aaPredicted RBP15.88■□□□□ 0.13
HMGB1-206ENST00000405805 ABCA10Q8WWZ4 1543 aa15.88■□□□□ 0.13
HMGB1-206ENST00000405805 CC2D1BQ5T0F9 858 aaKnown RBP15.87■□□□□ 0.13
HMGB1-206ENST00000405805 AMER1Q5JTC6 1135 aaPredicted RBP15.87■□□□□ 0.13
HMGB1-206ENST00000405805 NAP1L5Q96NT1 182 aaPredicted RBP15.87■□□□□ 0.13
HMGB1-206ENST00000405805 URB2Q14146 1524 aaKnown RBP15.86■□□□□ 0.13
HMGB1-206ENST00000405805 CCDC18Q5T9S5 1454 aa15.85■□□□□ 0.13
HMGB1-206ENST00000405805 DCAF11Q8TEB1 546 aa15.85■□□□□ 0.13
HMGB1-206ENST00000405805 JPH4Q96JJ6 628 aa15.84■□□□□ 0.13
HMGB1-206ENST00000405805 PKD2Q13563 968 aa15.84■□□□□ 0.13
HMGB1-206ENST00000405805 PCF11O94913 1555 aaKnown RBP15.84■□□□□ 0.13
HMGB1-206ENST00000405805 NCOA2Q15596 1464 aa15.83■□□□□ 0.12
HMGB1-206ENST00000405805 CANXP27824 592 aaKnown RBP15.82■□□□□ 0.12
HMGB1-206ENST00000405805 FYCO1Q9BQS8 1478 aa15.82■□□□□ 0.12
HMGB1-206ENST00000405805 C11orf95C9JLR9 678 aaPredicted RBP15.81■□□□□ 0.12
HMGB1-206ENST00000405805 MYOM3Q5VTT5 1437 aa15.8■□□□□ 0.12
HMGB1-206ENST00000405805 SLC24A1O60721 1099 aa15.79■□□□□ 0.12
HMGB1-206ENST00000405805 PAK3O75914 559 aaPredicted RBP15.78■□□□□ 0.12
HMGB1-206ENST00000405805 IL27Q8NEV9 243 aa15.78■□□□□ 0.12
HMGB1-206ENST00000405805 RGS3P49796 1198 aa15.77■□□□□ 0.12
HMGB1-206ENST00000405805 ERICH6BQ5W0A0 696 aa15.77■□□□□ 0.12
HMGB1-206ENST00000405805 PLIN1O60240 522 aa15.77■□□□□ 0.11
HMGB1-206ENST00000405805 NBPF8Q3BBV2 869 aa15.77■□□□□ 0.11
HMGB1-206ENST00000405805 HNRNPMP52272 730 aaKnown RBP eCLIP15.76■□□□□ 0.11
HMGB1-206ENST00000405805 NUDCQ9Y266 331 aa15.75■□□□□ 0.11
HMGB1-206ENST00000405805 KIF7Q2M1P5 1343 aa15.74■□□□□ 0.11
HMGB1-206ENST00000405805 FANCIQ9NVI1 1328 aa15.73■□□□□ 0.11
HMGB1-206ENST00000405805 EFCAB5A4FU69 1503 aa15.73■□□□□ 0.11
HMGB1-206ENST00000405805 WDR43Q15061 677 aaKnown RBP eCLIP15.72■□□□□ 0.11
HMGB1-206ENST00000405805 EXOC6Q8TAG9 804 aa15.72■□□□□ 0.11
HMGB1-206ENST00000405805 ST20-MTHFSA0A0A6YYL1 179 aa15.72■□□□□ 0.11
HMGB1-206ENST00000405805 CHGAP10645 457 aaKnown RBP15.72■□□□□ 0.11
HMGB1-206ENST00000405805 SLC4A3P48751 1232 aa15.71■□□□□ 0.11
HMGB1-206ENST00000405805 UACAQ9BZF9 1416 aa15.71■□□□□ 0.11
HMGB1-206ENST00000405805 NEUROD2Q15784 382 aa15.71■□□□□ 0.11
HMGB1-206ENST00000405805 MAPKBP1O60336 1514 aa15.71■□□□□ 0.11
HMGB1-206ENST00000405805 ZBED9Q6R2W3 1325 aa15.7■□□□□ 0.1
HMGB1-206ENST00000405805 LAMC3Q9Y6N6 1575 aa15.7■□□□□ 0.1
HMGB1-206ENST00000405805 CDK13Q14004 1512 aaKnown RBP15.7■□□□□ 0.1
HMGB1-206ENST00000405805 GRIN2BQ13224 1484 aa15.7■□□□□ 0.1
HMGB1-206ENST00000405805 RCAN3Q9UKA8 241 aa15.7■□□□□ 0.1
HMGB1-206ENST00000405805 PTPRKQ15262 1439 aa15.69■□□□□ 0.1
HMGB1-206ENST00000405805 CARMIL2Q6F5E8 1435 aa15.69■□□□□ 0.1
HMGB1-206ENST00000405805 ZNF608Q9ULD9 1512 aaPredicted RBP15.69■□□□□ 0.1
HMGB1-206ENST00000405805 CCDC7Q96M83 1385 aa15.69■□□□□ 0.1
HMGB1-206ENST00000405805 IPO9Q96P70 1041 aaKnown RBP15.68■□□□□ 0.1
HMGB1-206ENST00000405805 NUP155O75694 1391 aa15.68■□□□□ 0.1
HMGB1-206ENST00000405805 AKNAQ7Z591 1439 aa15.68■□□□□ 0.1
HMGB1-206ENST00000405805 NAIPQ13075 1403 aa15.67■□□□□ 0.1
HMGB1-206ENST00000405805 MRC2Q9UBG0 1479 aa15.66■□□□□ 0.1
HMGB1-206ENST00000405805 TNNT2P45379 298 aaPredicted RBP15.66■□□□□ 0.1
HMGB1-206ENST00000405805 SKAP1Q86WV1 359 aa15.66■□□□□ 0.1
HMGB1-206ENST00000405805 HFM1A2PYH4 1435 aa15.65■□□□□ 0.1
HMGB1-206ENST00000405805 MAP3K1Q13233 1512 aa15.65■□□□□ 0.1
HMGB1-206ENST00000405805 PRDM2Q13029 1718 aa15.65■□□□□ 0.1
HMGB1-206ENST00000405805 ARID3AQ99856 593 aa15.65■□□□□ 0.1
HMGB1-206ENST00000405805 PRG4Q92954 1404 aaPredicted RBP15.64■□□□□ 0.09
HMGB1-206ENST00000405805 SNAPC4Q5SXM2 1469 aa15.63■□□□□ 0.09
HMGB1-206ENST00000405805 PLEKHG5O94827 1062 aa15.62■□□□□ 0.09
HMGB1-206ENST00000405805 CUL7Q14999 1698 aa15.62■□□□□ 0.09
HMGB1-206ENST00000405805 CDCA7LQ96GN5 454 aa15.61■□□□□ 0.09
HMGB1-206ENST00000405805 EPRSP07814 1512 aaKnown RBP15.61■□□□□ 0.09
HMGB1-206ENST00000405805 UBE2Q2Q8WVN8 375 aa15.61■□□□□ 0.09
HMGB1-206ENST00000405805 USP47Q96K76 1375 aa15.6■□□□□ 0.09
HMGB1-206ENST00000405805 ANKRD30AQ9BXX3 1397 aa15.6■□□□□ 0.09
HMGB1-206ENST00000405805 CNTLNQ9NXG0 1405 aa15.6■□□□□ 0.09
HMGB1-206ENST00000405805 KNSTRNQ9Y448 316 aa15.6■□□□□ 0.09
HMGB1-206ENST00000405805 FRAT1Q92837 279 aaPredicted RBP15.58■□□□□ 0.09
HMGB1-206ENST00000405805 PDE4AP27815 886 aa15.58■□□□□ 0.08
HMGB1-206ENST00000405805 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.57■□□□□ 0.088e-9■■■□□ 17.4
HMGB1-206ENST00000405805 HSP90AA1P07900 732 aaKnown RBP15.57■□□□□ 0.08
HMGB1-206ENST00000405805 EHBP1L1Q8N3D4 1523 aa15.56■□□□□ 0.08
HMGB1-206ENST00000405805 PTPRGP23470 1445 aa15.56■□□□□ 0.08
HMGB1-206ENST00000405805 CCDC146Q8IYE0 955 aa15.56■□□□□ 0.08
HMGB1-206ENST00000405805 IFT140Q96RY7 1462 aa15.56■□□□□ 0.08
HMGB1-206ENST00000405805 HSP90AA2PQ14568 343 aaPredicted RBP15.56■□□□□ 0.08
HMGB1-206ENST00000405805 IQGAP2Q13576 1575 aa15.56■□□□□ 0.08
HMGB1-206ENST00000405805 ROCK2O75116 1388 aaKnown RBP15.56■□□□□ 0.08
HMGB1-206ENST00000405805 RRP1P56182 461 aaKnown RBP15.55■□□□□ 0.08
HMGB1-206ENST00000405805 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.55■□□□□ 0.08
HMGB1-206ENST00000405805 SPRYD3Q8NCJ5 442 aa15.55■□□□□ 0.08
HMGB1-206ENST00000405805 PLB1Q6P1J6 1458 aa15.54■□□□□ 0.08
HMGB1-206ENST00000405805 CRBNQ96SW2 442 aa15.54■□□□□ 0.08
HMGB1-206ENST00000405805 PPM1GO15355 546 aaPredicted RBP15.53■□□□□ 0.08
HMGB1-206ENST00000405805 SUPT6HQ7KZ85 1726 aaKnown RBP15.52■□□□□ 0.07
HMGB1-206ENST00000405805 PANK3Q9H999 370 aa15.52■□□□□ 0.07
HMGB1-206ENST00000405805 NPM1P06748 294 aaKnown RBP eCLIP15.51■□□□□ 0.07
HMGB1-206ENST00000405805 NLRP13Q86W25 1043 aa15.51■□□□□ 0.07
HMGB1-206ENST00000405805 KIAA0586Q9BVV6 1533 aa15.51■□□□□ 0.07
HMGB1-206ENST00000405805 TCERG1O14776 1098 aaKnown RBP15.51■□□□□ 0.07
HMGB1-206ENST00000405805 KTN1Q86UP2 1357 aaKnown RBP15.5■□□□□ 0.07
HMGB1-206ENST00000405805 DDRGK1Q96HY6 314 aa15.5■□□□□ 0.07
HMGB1-206ENST00000405805 PTPN23Q9H3S7 1636 aa15.5■□□□□ 0.07
HMGB1-206ENST00000405805 PNISRQ8TF01 805 aaKnown RBP15.49■□□□□ 0.07
HMGB1-206ENST00000405805 KIF21AQ7Z4S6 1674 aa15.49■□□□□ 0.07
HMGB1-206ENST00000405805 RALBP1Q15311 655 aa15.49■□□□□ 0.07
HMGB1-206ENST00000405805 THOC2Q8NI27 1593 aaKnown RBP15.49■□□□□ 0.07
HMGB1-206ENST00000405805 DAPK1P53355 1430 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms