RNA–Protein interactions for RNA: ENST00000405578.8

RPAIN-204, Transcript of RPA interacting protein, humanhuman

TSL 2 BASIC

Gene RPAIN, Length 1,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-204ENST00000405578 YEATS2Q9ULM3 1422 aa17.08■□□□□ 0.32
RPAIN-204ENST00000405578 STRCQ7RTU9 1775 aa17.07■□□□□ 0.32
RPAIN-204ENST00000405578 NUP153P49790 1475 aaKnown RBP17.07■□□□□ 0.32
RPAIN-204ENST00000405578 MLECQ14165 292 aa17.05■□□□□ 0.32
RPAIN-204ENST00000405578 HECW1Q76N89 1606 aa17.05■□□□□ 0.32
RPAIN-204ENST00000405578 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.05■□□□□ 0.32
RPAIN-204ENST00000405578 ARHGEF12Q9NZN5 1544 aa17.01■□□□□ 0.31
RPAIN-204ENST00000405578 MAGI2Q86UL8 1455 aa17.01■□□□□ 0.31
RPAIN-204ENST00000405578 RANGAP1P46060 587 aaPredicted RBP16.98■□□□□ 0.31
RPAIN-204ENST00000405578 SETD1BQ9UPS6 1966 aaKnown RBP16.97■□□□□ 0.31
RPAIN-204ENST00000405578 PLEKHD1A6NEE1 506 aa16.95■□□□□ 0.3
RPAIN-204ENST00000405578 C9orf84Q5VXU9 1444 aa16.95■□□□□ 0.3
RPAIN-204ENST00000405578 UHRF1BP1Q6BDS2 1440 aa16.94■□□□□ 0.3
RPAIN-204ENST00000405578 ATP10AO60312 1499 aa16.93■□□□□ 0.3
RPAIN-204ENST00000405578 LOC105371045A0A1W2PR82 267 aa16.93■□□□□ 0.3
RPAIN-204ENST00000405578 CEBPAP49715 358 aaPredicted RBP16.93■□□□□ 0.3
RPAIN-204ENST00000405578 DMRT2Q9Y5R5 561 aa16.93■□□□□ 0.3
RPAIN-204ENST00000405578 SCAPERQ9BY12 1400 aa16.93■□□□□ 0.3
RPAIN-204ENST00000405578 MYO5CQ9NQX4 1742 aa16.93■□□□□ 0.3
RPAIN-204ENST00000405578 C3P01024 1663 aa16.91■□□□□ 0.3
RPAIN-204ENST00000405578 CDK13Q14004 1512 aaKnown RBP16.9■□□□□ 0.3
RPAIN-204ENST00000405578 LTBP4Q8N2S1 1624 aa16.89■□□□□ 0.29
RPAIN-204ENST00000405578 PTPRTO14522 1441 aa16.88■□□□□ 0.29
RPAIN-204ENST00000405578 PLCH2O75038 1416 aa16.87■□□□□ 0.29
RPAIN-204ENST00000405578 IQSEC2Q5JU85 1478 aa16.85■□□□□ 0.29
RPAIN-204ENST00000405578 CLIP1P30622 1438 aa16.84■□□□□ 0.29
RPAIN-204ENST00000405578 DIP2CQ9Y2E4 1556 aa16.84■□□□□ 0.29
RPAIN-204ENST00000405578 KDM5CP41229 1560 aa16.83■□□□□ 0.28
RPAIN-204ENST00000405578 ABCA6Q8N139 1617 aa16.82■□□□□ 0.28
RPAIN-204ENST00000405578 KIF14Q15058 1648 aa16.81■□□□□ 0.28
RPAIN-204ENST00000405578 ZNF518AQ6AHZ1 1483 aa16.81■□□□□ 0.28
RPAIN-204ENST00000405578 REREQ9P2R6 1566 aa16.81■□□□□ 0.28
RPAIN-204ENST00000405578 ARHGAP35Q9NRY4 1499 aa16.8■□□□□ 0.28
RPAIN-204ENST00000405578 CEP162Q5TB80 1403 aa16.79■□□□□ 0.28
RPAIN-204ENST00000405578 NCOA1Q15788 1441 aa16.79■□□□□ 0.28
RPAIN-204ENST00000405578 EFCAB2Q5VUJ9 269 aa16.78■□□□□ 0.28
RPAIN-204ENST00000405578 ARHGAP5Q13017 1502 aa16.77■□□□□ 0.28
RPAIN-204ENST00000405578 FMN1Q68DA7 1419 aa16.77■□□□□ 0.27
RPAIN-204ENST00000405578 CAMSAP1Q5T5Y3 1602 aa16.75■□□□□ 0.27
RPAIN-204ENST00000405578 MYT1LQ9UL68 1186 aa16.75■□□□□ 0.27
RPAIN-204ENST00000405578 SUPT6HQ7KZ85 1726 aaKnown RBP16.74■□□□□ 0.27
RPAIN-204ENST00000405578 CDC42BPBQ9Y5S2 1711 aa16.74■□□□□ 0.27
RPAIN-204ENST00000405578 TRAPPC8Q9Y2L5 1435 aa16.74■□□□□ 0.27
RPAIN-204ENST00000405578 AFAP1Q8N556 730 aa16.73■□□□□ 0.27
RPAIN-204ENST00000405578 AGLP35573 1532 aa16.73■□□□□ 0.27
RPAIN-204ENST00000405578 MROH2AA6NES4 1674 aa16.72■□□□□ 0.27
RPAIN-204ENST00000405578 ITSN2Q9NZM3 1697 aa16.72■□□□□ 0.27
RPAIN-204ENST00000405578 ESF1Q9H501 851 aaKnown RBP16.71■□□□□ 0.27
RPAIN-204ENST00000405578 ATP1B4Q9UN42 357 aaPredicted RBP16.71■□□□□ 0.27
RPAIN-204ENST00000405578 LRRIQ1Q96JM4 1722 aa16.7■□□□□ 0.26
RPAIN-204ENST00000405578 MLH3Q9UHC1 1453 aa16.7■□□□□ 0.26
RPAIN-204ENST00000405578 KIDINS220Q9ULH0 1771 aa16.69■□□□□ 0.26
RPAIN-204ENST00000405578 UBAP1LF5GYI3 381 aa16.69■□□□□ 0.26
RPAIN-204ENST00000405578 ABCC1P33527 1531 aa16.69■□□□□ 0.26
RPAIN-204ENST00000405578 MED1Q15648 1581 aaPredicted RBP16.68■□□□□ 0.26
RPAIN-204ENST00000405578 PREX2Q70Z35 1606 aa16.68■□□□□ 0.26
RPAIN-204ENST00000405578 CNTLNQ9NXG0 1405 aa16.68■□□□□ 0.26
RPAIN-204ENST00000405578 ZNF142P52746 1687 aaPredicted RBP16.68■□□□□ 0.26
RPAIN-204ENST00000405578 ZNF335Q9H4Z2 1342 aaPredicted RBP16.68■□□□□ 0.26
RPAIN-204ENST00000405578 MYO3AQ8NEV4 1616 aa16.67■□□□□ 0.26
RPAIN-204ENST00000405578 TROQ12816 1431 aaPredicted RBP16.67■□□□□ 0.26
RPAIN-204ENST00000405578 SENP3Q9H4L4 574 aaPredicted RBP16.66■□□□□ 0.26
RPAIN-204ENST00000405578 NPATQ14207 1427 aa16.64■□□□□ 0.25
RPAIN-204ENST00000405578 CLTCQ00610 1675 aaKnown RBP16.64■□□□□ 0.25
RPAIN-204ENST00000405578 NCKAP5LQ9HCH0 1330 aa16.64■□□□□ 0.25
RPAIN-204ENST00000405578 CDK11AQ9UQ88 783 aaPredicted RBP16.63■□□□□ 0.25
RPAIN-204ENST00000405578 CASKIN1Q8WXD9 1431 aa16.62■□□□□ 0.25
RPAIN-204ENST00000405578 CDC42BPAQ5VT25 1732 aa16.62■□□□□ 0.25
RPAIN-204ENST00000405578 CEP170BQ9Y4F5 1589 aaPredicted RBP16.61■□□□□ 0.25
RPAIN-204ENST00000405578 PLA2R1Q13018 1463 aa16.61■□□□□ 0.25
RPAIN-204ENST00000405578 VPS8Q8N3P4 1428 aa16.59■□□□□ 0.25
RPAIN-204ENST00000405578 FYCO1Q9BQS8 1478 aa16.59■□□□□ 0.25
RPAIN-204ENST00000405578 TCOF1Q13428 1488 aaKnown RBP16.58■□□□□ 0.24
RPAIN-204ENST00000405578 SAMD9LQ8IVG5 1584 aa16.57■□□□□ 0.24
RPAIN-204ENST00000405578 ZMYM3Q14202 1370 aa16.57■□□□□ 0.24
RPAIN-204ENST00000405578 POLR1AO95602 1720 aaPredicted RBP16.56■□□□□ 0.24
RPAIN-204ENST00000405578 SCAF1Q9H7N4 1312 aaKnown RBP16.56■□□□□ 0.24
RPAIN-204ENST00000405578 HSPA1LP34931 641 aa16.55■□□□□ 0.24
RPAIN-204ENST00000405578 APLP2Q06481 763 aa16.55■□□□□ 0.24
RPAIN-204ENST00000405578 PKD2Q13563 968 aa16.55■□□□□ 0.24
RPAIN-204ENST00000405578 CCDC18Q5T9S5 1454 aa16.54■□□□□ 0.24
RPAIN-204ENST00000405578 PLXNC1O60486 1568 aa16.52■□□□□ 0.24
RPAIN-204ENST00000405578 SYCP2Q9BX26 1530 aa16.52■□□□□ 0.24
RPAIN-204ENST00000405578 PPP6R1Q9UPN7 881 aa16.52■□□□□ 0.24
RPAIN-204ENST00000405578 PTPRKQ15262 1439 aa16.52■□□□□ 0.23
RPAIN-204ENST00000405578 PIP4K2BP78356 416 aa16.51■□□□□ 0.23
RPAIN-204ENST00000405578 ATP7AQ04656 1500 aa16.5■□□□□ 0.23
RPAIN-204ENST00000405578 DNMT1P26358 1616 aaKnown RBP16.5■□□□□ 0.23
RPAIN-204ENST00000405578 INO80Q9ULG1 1556 aaPredicted RBP16.5■□□□□ 0.23
RPAIN-204ENST00000405578 CPS1P31327 1500 aa16.49■□□□□ 0.23
RPAIN-204ENST00000405578 NEURL4Q96JN8 1562 aa16.48■□□□□ 0.23
RPAIN-204ENST00000405578 PHF23Q9BUL5 403 aaPredicted RBP16.48■□□□□ 0.23
RPAIN-204ENST00000405578 A2ML1A8K2U0 1454 aa16.47■□□□□ 0.23
RPAIN-204ENST00000405578 TOM1O60784 492 aa16.46■□□□□ 0.23
RPAIN-204ENST00000405578 A2MP01023 1474 aa16.46■□□□□ 0.23
RPAIN-204ENST00000405578 ADGBQ8N7X0 1667 aa16.46■□□□□ 0.23
RPAIN-204ENST00000405578 SPAG9O60271 1321 aaKnown RBP16.45■□□□□ 0.22
RPAIN-204ENST00000405578 ALKQ9UM73 1620 aa16.45■□□□□ 0.22
RPAIN-204ENST00000405578 SHANK2Q9UPX8 1470 aa16.44■□□□□ 0.22
RPAIN-204ENST00000405578 MTUS2Q5JR59 1369 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms