RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 SUPT16HQ9Y5B9 1047 aaKnown RBP5.53□□□□□ -1.52
RTN4-209ENST00000405240 RPRD2Q5VT52 1461 aaKnown RBP5.53□□□□□ -1.52
RTN4-209ENST00000405240 KIF14Q15058 1648 aa5.53□□□□□ -1.52
RTN4-209ENST00000405240 KDM5DQ9BY66 1539 aa5.52□□□□□ -1.53
RTN4-209ENST00000405240 ANKRD30BQ9BXX2 1392 aa5.52□□□□□ -1.53
RTN4-209ENST00000405240 SPATA31E1Q6ZUB1 1445 aa5.51□□□□□ -1.53
RTN4-209ENST00000405240 PZPP20742 1482 aa5.51□□□□□ -1.53
RTN4-209ENST00000405240 KCNH8Q96L42 1107 aa5.51□□□□□ -1.53
RTN4-209ENST00000405240 TONSLQ96HA7 1378 aa5.51□□□□□ -1.53
RTN4-209ENST00000405240 TROQ12816 1431 aaPredicted RBP5.51□□□□□ -1.53
RTN4-209ENST00000405240 ABCC10Q5T3U5 1492 aa5.51□□□□□ -1.53
RTN4-209ENST00000405240 SHANK2Q9UPX8 1470 aa5.51□□□□□ -1.53
RTN4-209ENST00000405240 CAMSAP2Q08AD1 1489 aa5.51□□□□□ -1.53
RTN4-209ENST00000405240 GPATCH8Q9UKJ3 1502 aaKnown RBP5.51□□□□□ -1.53
RTN4-209ENST00000405240 ARHGEF5Q12774 1597 aa5.5□□□□□ -1.53
RTN4-209ENST00000405240 SHROOM2Q13796 1616 aa5.5□□□□□ -1.53
RTN4-209ENST00000405240 NCOA1Q15788 1441 aa5.5□□□□□ -1.53
RTN4-209ENST00000405240 ATP1B4Q9UN42 357 aaPredicted RBP5.49□□□□□ -1.53
RTN4-209ENST00000405240 DDX10Q13206 875 aaKnown RBP5.49□□□□□ -1.53
RTN4-209ENST00000405240 CDC42BPBQ9Y5S2 1711 aa5.49□□□□□ -1.53
RTN4-209ENST00000405240 KDM5CP41229 1560 aa5.48□□□□□ -1.53
RTN4-209ENST00000405240 MPHOSPH9Q99550 1183 aa5.48□□□□□ -1.53
RTN4-209ENST00000405240 MAST1Q9Y2H9 1570 aa5.48□□□□□ -1.53
RTN4-209ENST00000405240 PREX2Q70Z35 1606 aa5.48□□□□□ -1.53
RTN4-209ENST00000405240 BCORL1Q5H9F3 1711 aa5.48□□□□□ -1.53
RTN4-209ENST00000405240 E9PCH4 1651 aa5.48□□□□□ -1.53
RTN4-209ENST00000405240 CNTLNQ9NXG0 1405 aa5.48□□□□□ -1.53
RTN4-209ENST00000405240 PLB1Q6P1J6 1458 aa5.47□□□□□ -1.53
RTN4-209ENST00000405240 PTPRGP23470 1445 aa5.47□□□□□ -1.53
RTN4-209ENST00000405240 UHRF1BP1Q6BDS2 1440 aa5.47□□□□□ -1.53
RTN4-209ENST00000405240 WASHC2AQ641Q2 1341 aa5.47□□□□□ -1.53
RTN4-209ENST00000405240 PRG4Q92954 1404 aaPredicted RBP5.47□□□□□ -1.53
RTN4-209ENST00000405240 ARHGEF12Q9NZN5 1544 aa5.47□□□□□ -1.53
RTN4-209ENST00000405240 UNC13BO14795 1591 aa5.46□□□□□ -1.54
RTN4-209ENST00000405240 ATP10BO94823 1461 aa5.46□□□□□ -1.54
RTN4-209ENST00000405240 RRP7BPQ9NSQ0 103 aa5.46□□□□□ -1.54
RTN4-209ENST00000405240 LAMC1P11047 1609 aa5.45□□□□□ -1.54
RTN4-209ENST00000405240 CHD1O14646 1710 aa5.45□□□□□ -1.54
RTN4-209ENST00000405240 SAMD9LQ8IVG5 1584 aa5.45□□□□□ -1.54
RTN4-209ENST00000405240 KIAA1107Q9UPP5 1409 aa5.45□□□□□ -1.54
RTN4-209ENST00000405240 CCDC7Q96M83 1385 aa5.45□□□□□ -1.54
RTN4-209ENST00000405240 CARMIL2Q6F5E8 1435 aa5.45□□□□□ -1.54
RTN4-209ENST00000405240 ANP32CO43423 234 aa5.45□□□□□ -1.54
RTN4-209ENST00000405240 HSPA5P11021 654 aaKnown RBP5.45□□□□□ -1.54
RTN4-209ENST00000405240 PLXNC1O60486 1568 aa5.44□□□□□ -1.54
RTN4-209ENST00000405240 L3MBTL2Q969R5 705 aa5.44□□□□□ -1.54
RTN4-209ENST00000405240 MYT1Q01538 1121 aa5.44□□□□□ -1.54
RTN4-209ENST00000405240 ZNF644Q9H582 1327 aaPredicted RBP5.44□□□□□ -1.54
RTN4-209ENST00000405240 RALGAPBQ86X10 1494 aa5.44□□□□□ -1.54
RTN4-209ENST00000405240 NBPF8Q3BBV2 869 aa5.43□□□□□ -1.54
RTN4-209ENST00000405240 TSHZ2Q9NRE2 1034 aa5.43□□□□□ -1.54
RTN4-209ENST00000405240 TRPM1Q7Z4N2 1603 aa5.43□□□□□ -1.54
RTN4-209ENST00000405240 C11orf95C9JLR9 678 aaPredicted RBP5.43□□□□□ -1.54
RTN4-209ENST00000405240 CHIC2Q9UKJ5 165 aa5.43□□□□□ -1.54
RTN4-209ENST00000405240 CDK11AQ9UQ88 783 aaPredicted RBP5.43□□□□□ -1.54
RTN4-209ENST00000405240 IQGAP3Q86VI3 1631 aa5.43□□□□□ -1.54
RTN4-209ENST00000405240 MYO5CQ9NQX4 1742 aa5.43□□□□□ -1.54
RTN4-209ENST00000405240 HIRIP3Q9BW71 556 aaPredicted RBP5.43□□□□□ -1.54
RTN4-209ENST00000405240 MAGI2Q86UL8 1455 aa5.42□□□□□ -1.54
RTN4-209ENST00000405240 EIF4G2P78344 907 aaKnown RBP eCLIP5.42□□□□□ -1.549e-7■■■■□ 19.9
RTN4-209ENST00000405240 ERCC6Q03468 1493 aa5.42□□□□□ -1.54
RTN4-209ENST00000405240 DHX29Q7Z478 1369 aaKnown RBP5.42□□□□□ -1.54
RTN4-209ENST00000405240 ARID4BQ4LE39 1312 aaPredicted RBP5.42□□□□□ -1.54
RTN4-209ENST00000405240 ANKRD30AQ9BXX3 1397 aa5.41□□□□□ -1.54
RTN4-209ENST00000405240 C9orf84Q5VXU9 1444 aa5.41□□□□□ -1.54
RTN4-209ENST00000405240 ANKRD50Q9ULJ7 1429 aa5.41□□□□□ -1.54
RTN4-209ENST00000405240 TTC37Q6PGP7 1564 aa5.41□□□□□ -1.54
RTN4-209ENST00000405240 JPH4Q96JJ6 628 aa5.41□□□□□ -1.54
RTN4-209ENST00000405240 RNF17Q9BXT8 1623 aaKnown RBP5.4□□□□□ -1.54
RTN4-209ENST00000405240 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.4□□□□□ -1.543e-14■□□□□ 8.3
RTN4-209ENST00000405240 ATP10AO60312 1499 aa5.4□□□□□ -1.54
RTN4-209ENST00000405240 FAM135AQ9P2D6 1515 aa5.4□□□□□ -1.55
RTN4-209ENST00000405240 KIF7Q2M1P5 1343 aa5.4□□□□□ -1.55
RTN4-209ENST00000405240 ERICH6BQ5W0A0 696 aa5.39□□□□□ -1.55
RTN4-209ENST00000405240 TRIM52Q96A61 297 aa5.39□□□□□ -1.55
RTN4-209ENST00000405240 PRKRIP1Q9H875 184 aaPredicted RBP5.39□□□□□ -1.55
RTN4-209ENST00000405240 CCDC141Q6ZP82 1450 aa5.39□□□□□ -1.55
RTN4-209ENST00000405240 CLASP1Q7Z460 1538 aa5.39□□□□□ -1.55
RTN4-209ENST00000405240 CFDP1Q9UEE9 299 aaPredicted RBP5.39□□□□□ -1.55
RTN4-209ENST00000405240 ABCC2Q92887 1545 aa5.39□□□□□ -1.55
RTN4-209ENST00000405240 FOXD1Q16676 465 aa5.39□□□□□ -1.55
RTN4-209ENST00000405240 DEPDC5O75140 1603 aa5.39□□□□□ -1.55
RTN4-209ENST00000405240 UHRF1BP1LA0JNW5 1464 aa5.38□□□□□ -1.55
RTN4-209ENST00000405240 CHMP7Q8WUX9 453 aaPredicted RBP5.38□□□□□ -1.55
RTN4-209ENST00000405240 PRDM15P57071 1507 aaPredicted RBP5.38□□□□□ -1.55
RTN4-209ENST00000405240 ARAP3Q8WWN8 1544 aa5.38□□□□□ -1.55
RTN4-209ENST00000405240 NEURL4Q96JN8 1562 aa5.38□□□□□ -1.55
RTN4-209ENST00000405240 ZCCHC11Q5TAX3 1644 aaKnown RBP5.38□□□□□ -1.55
RTN4-209ENST00000405240 FKBP8Q14318 412 aa5.38□□□□□ -1.55
RTN4-209ENST00000405240 SLC4A1APQ9BWU0 796 aaKnown RBP5.38□□□□□ -1.55
RTN4-209ENST00000405240 PLA2R1Q13018 1463 aa5.37□□□□□ -1.55
RTN4-209ENST00000405240 CCDC184Q52MB2 194 aa5.37□□□□□ -1.55
RTN4-209ENST00000405240 EIF2AK4Q9P2K8 1649 aaKnown RBP5.37□□□□□ -1.55
RTN4-209ENST00000405240 ZBED9Q6R2W3 1325 aa5.37□□□□□ -1.55
RTN4-209ENST00000405240 GPRASP1Q5JY77 1395 aa5.37□□□□□ -1.55
RTN4-209ENST00000405240 CEP152O94986 1710 aa5.37□□□□□ -1.55
RTN4-209ENST00000405240 ZMYM4Q5VZL5 1548 aa5.37□□□□□ -1.55
RTN4-209ENST00000405240 SYCP2Q9BX26 1530 aa5.37□□□□□ -1.55
RTN4-209ENST00000405240 IQGAP1P46940 1657 aa5.37□□□□□ -1.55
RTN4-209ENST00000405240 ROCK2O75116 1388 aaKnown RBP5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms