RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 ARHGEF12Q9NZN5 1544 aa16.28■□□□□ 0.2
NEDD9-203ENST00000397378 IQSEC2Q5JU85 1478 aa16.28■□□□□ 0.2
NEDD9-203ENST00000397378 PTPRTO14522 1441 aa16.28■□□□□ 0.2
NEDD9-203ENST00000397378 MAGI2Q86UL8 1455 aa16.27■□□□□ 0.19
NEDD9-203ENST00000397378 HECW1Q76N89 1606 aa16.27■□□□□ 0.19
NEDD9-203ENST00000397378 SETD1BQ9UPS6 1966 aaKnown RBP16.21■□□□□ 0.19
NEDD9-203ENST00000397378 PRXQ9BXM0 1461 aa16.21■□□□□ 0.19
NEDD9-203ENST00000397378 C9orf84Q5VXU9 1444 aa16.2■□□□□ 0.18
NEDD9-203ENST00000397378 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.19■□□□□ 0.18
NEDD9-203ENST00000397378 ATP10AO60312 1499 aa16.19■□□□□ 0.18
NEDD9-203ENST00000397378 UBAP1LF5GYI3 381 aa16.19■□□□□ 0.18
NEDD9-203ENST00000397378 NUP153P49790 1475 aaKnown RBP16.18■□□□□ 0.18
NEDD9-203ENST00000397378 PLEKHD1A6NEE1 506 aa16.18■□□□□ 0.18
NEDD9-203ENST00000397378 SCAPERQ9BY12 1400 aa16.16■□□□□ 0.18
NEDD9-203ENST00000397378 MED1Q15648 1581 aaPredicted RBP16.16■□□□□ 0.18
NEDD9-203ENST00000397378 C3P01024 1663 aa16.15■□□□□ 0.18
NEDD9-203ENST00000397378 SAMD9Q5K651 1589 aa16.15■□□□□ 0.18
NEDD9-203ENST00000397378 NCOA1Q15788 1441 aa16.13■□□□□ 0.17
NEDD9-203ENST00000397378 ZNF335Q9H4Z2 1342 aaPredicted RBP16.1■□□□□ 0.17
NEDD9-203ENST00000397378 ESF1Q9H501 851 aaKnown RBP16.09■□□□□ 0.17
NEDD9-203ENST00000397378 SCAF1Q9H7N4 1312 aaKnown RBP16.09■□□□□ 0.17
NEDD9-203ENST00000397378 CAMSAP1Q5T5Y3 1602 aa16.08■□□□□ 0.17
NEDD9-203ENST00000397378 MYT1LQ9UL68 1186 aa16.08■□□□□ 0.16
NEDD9-203ENST00000397378 PHF23Q9BUL5 403 aaPredicted RBP16.07■□□□□ 0.16
NEDD9-203ENST00000397378 TRAPPC8Q9Y2L5 1435 aa16.07■□□□□ 0.16
NEDD9-203ENST00000397378 PLCH2O75038 1416 aa16.06■□□□□ 0.16
NEDD9-203ENST00000397378 HSPA1LP34931 641 aa16.05■□□□□ 0.16
NEDD9-203ENST00000397378 ZNF518AQ6AHZ1 1483 aa16.03■□□□□ 0.16
NEDD9-203ENST00000397378 MYO5CQ9NQX4 1742 aa16.03■□□□□ 0.16
NEDD9-203ENST00000397378 RANGAP1P46060 587 aaPredicted RBP16.03■□□□□ 0.16
NEDD9-203ENST00000397378 PIP4K2BP78356 416 aa16.03■□□□□ 0.16
NEDD9-203ENST00000397378 DIP2CQ9Y2E4 1556 aa16.03■□□□□ 0.16
NEDD9-203ENST00000397378 NCKAP5LQ9HCH0 1330 aa16.02■□□□□ 0.16
NEDD9-203ENST00000397378 REREQ9P2R6 1566 aa16■□□□□ 0.15
NEDD9-203ENST00000397378 EFCAB2Q5VUJ9 269 aa16■□□□□ 0.15
NEDD9-203ENST00000397378 KDM5CP41229 1560 aa16■□□□□ 0.15
NEDD9-203ENST00000397378 SUPT6HQ7KZ85 1726 aaKnown RBP15.99■□□□□ 0.15
NEDD9-203ENST00000397378 ABCA6Q8N139 1617 aa15.99■□□□□ 0.15
NEDD9-203ENST00000397378 CDK13Q14004 1512 aaKnown RBP15.99■□□□□ 0.15
NEDD9-203ENST00000397378 AFAP1Q8N556 730 aa15.98■□□□□ 0.15
NEDD9-203ENST00000397378 CSRNP3Q8WYN3 585 aa15.97■□□□□ 0.15
NEDD9-203ENST00000397378 AGLP35573 1532 aa15.97■□□□□ 0.15
NEDD9-203ENST00000397378 CNTLNQ9NXG0 1405 aa15.96■□□□□ 0.15
NEDD9-203ENST00000397378 TOM1O60784 492 aa15.95■□□□□ 0.14
NEDD9-203ENST00000397378 ARHGAP5Q13017 1502 aa15.94■□□□□ 0.14
NEDD9-203ENST00000397378 PKD2Q13563 968 aa15.94■□□□□ 0.14
NEDD9-203ENST00000397378 NPATQ14207 1427 aa15.94■□□□□ 0.14
NEDD9-203ENST00000397378 MROH2AA6NES4 1674 aa15.92■□□□□ 0.14
NEDD9-203ENST00000397378 PLA2R1Q13018 1463 aa15.92■□□□□ 0.14
NEDD9-203ENST00000397378 PPP6R1Q9UPN7 881 aa15.92■□□□□ 0.14
NEDD9-203ENST00000397378 ZNF142P52746 1687 aaPredicted RBP15.92■□□□□ 0.14
NEDD9-203ENST00000397378 MYO3AQ8NEV4 1616 aa15.91■□□□□ 0.14
NEDD9-203ENST00000397378 EEA1Q15075 1411 aa15.9■□□□□ 0.14
NEDD9-203ENST00000397378 TCOF1Q13428 1488 aaKnown RBP15.9■□□□□ 0.14
NEDD9-203ENST00000397378 MLH3Q9UHC1 1453 aa15.9■□□□□ 0.14
NEDD9-203ENST00000397378 KIF14Q15058 1648 aa15.9■□□□□ 0.14
NEDD9-203ENST00000397378 CEP170BQ9Y4F5 1589 aaPredicted RBP15.89■□□□□ 0.13
NEDD9-203ENST00000397378 SENP3Q9H4L4 574 aaPredicted RBP15.87■□□□□ 0.13
NEDD9-203ENST00000397378 ATP1B4Q9UN42 357 aaPredicted RBP15.87■□□□□ 0.13
NEDD9-203ENST00000397378 CPS1P31327 1500 aa15.87■□□□□ 0.13
NEDD9-203ENST00000397378 ZMYM3Q14202 1370 aa15.87■□□□□ 0.13
NEDD9-203ENST00000397378 CLTCQ00610 1675 aaKnown RBP15.84■□□□□ 0.13
NEDD9-203ENST00000397378 KIDINS220Q9ULH0 1771 aa15.84■□□□□ 0.13
NEDD9-203ENST00000397378 ITSN2Q9NZM3 1697 aa15.83■□□□□ 0.12
NEDD9-203ENST00000397378 CDC42BPBQ9Y5S2 1711 aa15.82■□□□□ 0.12
NEDD9-203ENST00000397378 CDK11AQ9UQ88 783 aaPredicted RBP15.82■□□□□ 0.12
NEDD9-203ENST00000397378 PTPRKQ15262 1439 aa15.82■□□□□ 0.12
NEDD9-203ENST00000397378 POLR1AO95602 1720 aaPredicted RBP15.81■□□□□ 0.12
NEDD9-203ENST00000397378 ABCC1P33527 1531 aa15.81■□□□□ 0.12
NEDD9-203ENST00000397378 SHANK2Q9UPX8 1470 aa15.81■□□□□ 0.12
NEDD9-203ENST00000397378 CLIP1P30622 1438 aa15.79■□□□□ 0.12
NEDD9-203ENST00000397378 ALKQ9UM73 1620 aa15.78■□□□□ 0.12
NEDD9-203ENST00000397378 TROQ12816 1431 aaPredicted RBP15.77■□□□□ 0.12
NEDD9-203ENST00000397378 DNMT1P26358 1616 aaKnown RBP15.77■□□□□ 0.12
NEDD9-203ENST00000397378 PREX2Q70Z35 1606 aa15.77■□□□□ 0.12
NEDD9-203ENST00000397378 RGS17Q9UGC6 210 aaPredicted RBP15.77■□□□□ 0.12
NEDD9-203ENST00000397378 NEURL4Q96JN8 1562 aa15.75■□□□□ 0.11
NEDD9-203ENST00000397378 A2ML1A8K2U0 1454 aa15.75■□□□□ 0.11
NEDD9-203ENST00000397378 FMN1Q68DA7 1419 aa15.73■□□□□ 0.11
NEDD9-203ENST00000397378 SAMD9LQ8IVG5 1584 aa15.72■□□□□ 0.11
NEDD9-203ENST00000397378 VWDEQ8N2E2 1590 aa15.71■□□□□ 0.11
NEDD9-203ENST00000397378 GGT6Q6P531 493 aa15.71■□□□□ 0.11
NEDD9-203ENST00000397378 RNF17Q9BXT8 1623 aaKnown RBP15.69■□□□□ 0.1
NEDD9-203ENST00000397378 SETD1AO15047 1707 aaKnown RBP15.68■□□□□ 0.1
NEDD9-203ENST00000397378 LRRIQ1Q96JM4 1722 aa15.68■□□□□ 0.1
NEDD9-203ENST00000397378 SPAG9O60271 1321 aaKnown RBP15.68■□□□□ 0.1
NEDD9-203ENST00000397378 PLXNC1O60486 1568 aa15.67■□□□□ 0.1
NEDD9-203ENST00000397378 ARHGAP35Q9NRY4 1499 aa15.67■□□□□ 0.1
NEDD9-203ENST00000397378 POTEAQ6S8J7 498 aa15.67■□□□□ 0.1
NEDD9-203ENST00000397378 CDC42BPAQ5VT25 1732 aa15.67■□□□□ 0.1
NEDD9-203ENST00000397378 A2MP01023 1474 aa15.66■□□□□ 0.1
NEDD9-203ENST00000397378 ANKLE2Q86XL3 938 aa15.66■□□□□ 0.1
NEDD9-203ENST00000397378 ZNF777Q9ULD5 760 aaPredicted RBP15.66■□□□□ 0.1
NEDD9-203ENST00000397378 ATP7AQ04656 1500 aa15.66■□□□□ 0.1
NEDD9-203ENST00000397378 SYCP2Q9BX26 1530 aa15.65■□□□□ 0.1
NEDD9-203ENST00000397378 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.64■□□□□ 0.09
NEDD9-203ENST00000397378 LRRC7Q96NW7 1537 aa15.63■□□□□ 0.09
NEDD9-203ENST00000397378 SYNMO15061 1565 aa15.63■□□□□ 0.09
NEDD9-203ENST00000397378 NPHP4O75161 1426 aaPredicted RBP15.63■□□□□ 0.09
NEDD9-203ENST00000397378 STRCP1A6NGW2 1772 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms