RNA–Protein interactions for RNA: ENST00000389757.7

PKP4-201, Transcript of plakophilin 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PKP4, Length 5,777 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-201ENST00000389757 HDGFL2Q7Z4V5 671 aaPredicted RBP13.45□□□□□ -0.26
PKP4-201ENST00000389757 SENP3-EIF4A1A0A087X0R7 540 aa13.45□□□□□ -0.26
PKP4-201ENST00000389757 IRX6P78412 446 aaPredicted RBP13.44□□□□□ -0.26
PKP4-201ENST00000389757 MORC1Q86VD1 984 aa13.44□□□□□ -0.26
PKP4-201ENST00000389757 RAB3GAP2Q9H2M9 1393 aa13.44□□□□□ -0.26
PKP4-201ENST00000389757 FTSJ3Q8IY81 847 aaKnown RBP13.43□□□□□ -0.26
PKP4-201ENST00000389757 IGF1RP08069 1367 aa13.42□□□□□ -0.26
PKP4-201ENST00000389757 RUSC2Q8N2Y8 1516 aa13.41□□□□□ -0.26
PKP4-201ENST00000389757 ROCK2O75116 1388 aaKnown RBP13.41□□□□□ -0.26
PKP4-201ENST00000389757 NPHP1O15259 732 aa13.4□□□□□ -0.26
PKP4-201ENST00000389757 AQRO60306 1485 aaKnown RBP eCLIP13.4□□□□□ -0.261e-9■■■■□ 21.4
PKP4-201ENST00000389757 PAK3O75914 559 aaPredicted RBP13.4□□□□□ -0.26
PKP4-201ENST00000389757 HSPA5P11021 654 aaKnown RBP13.4□□□□□ -0.26
PKP4-201ENST00000389757 EIF3AQ14152 1382 aaKnown RBP13.38□□□□□ -0.27
PKP4-201ENST00000389757 FAM69CQ0P6D2 419 aa13.36□□□□□ -0.27
PKP4-201ENST00000389757 ANP32BQ92688 251 aaKnown RBP13.36□□□□□ -0.27
PKP4-201ENST00000389757 NUTM2DQ5VT03 806 aaPredicted RBP13.35□□□□□ -0.27
PKP4-201ENST00000389757 CHMP4BQ9H444 224 aaKnown RBP13.35□□□□□ -0.27
PKP4-201ENST00000389757 GRIN2BQ13224 1484 aa13.34□□□□□ -0.27
PKP4-201ENST00000389757 CSB-PGBD3P0DP91 1061 aa13.34□□□□□ -0.27
PKP4-201ENST00000389757 FRAT1Q92837 279 aaPredicted RBP13.34□□□□□ -0.27
PKP4-201ENST00000389757 MS4A1P11836 297 aa13.33□□□□□ -0.28
PKP4-201ENST00000389757 RTF1Q92541 710 aaKnown RBP13.33□□□□□ -0.28
PKP4-201ENST00000389757 KTN1Q86UP2 1357 aaKnown RBP13.33□□□□□ -0.28
PKP4-201ENST00000389757 CC2D2AQ9P2K1 1620 aa13.33□□□□□ -0.28
PKP4-201ENST00000389757 MRC2Q9UBG0 1479 aa13.32□□□□□ -0.28
PKP4-201ENST00000389757 TERF2IPQ9NYB0 399 aa13.32□□□□□ -0.28
PKP4-201ENST00000389757 CFTRP13569 1480 aa13.32□□□□□ -0.28
PKP4-201ENST00000389757 L3MBTL2Q969R5 705 aa13.31□□□□□ -0.28
PKP4-201ENST00000389757 NGDNQ8NEJ9 315 aaKnown RBP13.3□□□□□ -0.28
PKP4-201ENST00000389757 NESP48681 1621 aa13.3□□□□□ -0.28
PKP4-201ENST00000389757 CCDC144AA2RUR9 1427 aa13.29□□□□□ -0.28
PKP4-201ENST00000389757 CASC1Q6TDU7 716 aa13.29□□□□□ -0.28
PKP4-201ENST00000389757 OS9Q13438 667 aaPredicted RBP13.28□□□□□ -0.28
PKP4-201ENST00000389757 SUPT16HQ9Y5B9 1047 aaKnown RBP13.28□□□□□ -0.28
PKP4-201ENST00000389757 UACAQ9BZF9 1416 aa13.28□□□□□ -0.28
PKP4-201ENST00000389757 VGFO15240 615 aaPredicted RBP13.27□□□□□ -0.28
PKP4-201ENST00000389757 IFT140Q96RY7 1462 aa13.27□□□□□ -0.28
PKP4-201ENST00000389757 EIF5BO60841 1220 aaKnown RBP13.27□□□□□ -0.29
PKP4-201ENST00000389757 U2AF1L5P0DN76 240 aaPredicted RBP13.27□□□□□ -0.29
PKP4-201ENST00000389757 U2AF1Q01081 240 aaKnown RBP eCLIP13.27□□□□□ -0.29
PKP4-201ENST00000389757 TRAK1Q9UPV9 953 aa13.26□□□□□ -0.29
PKP4-201ENST00000389757 HMGXB3Q12766 1538 aa13.26□□□□□ -0.29
PKP4-201ENST00000389757 CCDC9Q9Y3X0 531 aaKnown RBP13.26□□□□□ -0.29
PKP4-201ENST00000389757 RALBP1Q15311 655 aa13.25□□□□□ -0.29
PKP4-201ENST00000389757 MYOM3Q5VTT5 1437 aa13.24□□□□□ -0.29
PKP4-201ENST00000389757 CALD1Q05682 793 aaKnown RBP13.24□□□□□ -0.29
PKP4-201ENST00000389757 BECN1Q14457 450 aa13.24□□□□□ -0.29
PKP4-201ENST00000389757 NUTM2FA1L443 756 aa13.24□□□□□ -0.29
PKP4-201ENST00000389757 CCER2I3L3R5 266 aa13.24□□□□□ -0.29
PKP4-201ENST00000389757 PRG4Q92954 1404 aaPredicted RBP13.23□□□□□ -0.29
PKP4-201ENST00000389757 GOLGA2Q08379 1002 aa13.22□□□□□ -0.29
PKP4-201ENST00000389757 AMPHP49418 695 aa13.2□□□□□ -0.3
PKP4-201ENST00000389757 TOPBP1Q92547 1522 aa13.2□□□□□ -0.3
PKP4-201ENST00000389757 PRDM2Q13029 1718 aa13.2□□□□□ -0.3
PKP4-201ENST00000389757 DDRGK1Q96HY6 314 aa13.19□□□□□ -0.3
PKP4-201ENST00000389757 CHMP4AQ9BY43 222 aa13.19□□□□□ -0.3
PKP4-201ENST00000389757 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.19□□□□□ -0.38e-7■■■□□ 15.7
PKP4-201ENST00000389757 SYNJ2O15056 1496 aa13.19□□□□□ -0.3
PKP4-201ENST00000389757 KIF15Q9NS87 1388 aa13.18□□□□□ -0.3
PKP4-201ENST00000389757 CUX1P39880 1505 aa13.18□□□□□ -0.3
PKP4-201ENST00000389757 AEBP2Q6ZN18 517 aaPredicted RBP13.17□□□□□ -0.3
PKP4-201ENST00000389757 ZNF644Q9H582 1327 aaPredicted RBP13.17□□□□□ -0.3
PKP4-201ENST00000389757 RGS3P49796 1198 aa13.17□□□□□ -0.3
PKP4-201ENST00000389757 ZNF330Q9Y3S2 320 aaPredicted RBP13.17□□□□□ -0.3
PKP4-201ENST00000389757 IPO8O15397 1037 aaKnown RBP13.17□□□□□ -0.3
PKP4-201ENST00000389757 NCLP19338 710 aaKnown RBP13.17□□□□□ -0.3
PKP4-201ENST00000389757 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.17□□□□□ -0.3
PKP4-201ENST00000389757 PPP4R2Q9NY27 417 aa13.16□□□□□ -0.3
PKP4-201ENST00000389757 EVC2Q86UK5 1308 aa13.16□□□□□ -0.3
PKP4-201ENST00000389757 FGD6Q6ZV73 1430 aa13.15□□□□□ -0.3
PKP4-201ENST00000389757 CASKIN1Q8WXD9 1431 aa13.15□□□□□ -0.3
PKP4-201ENST00000389757 POLA1P09884 1462 aaPredicted RBP13.15□□□□□ -0.3
PKP4-201ENST00000389757 ST20-MTHFSA0A0A6YYL1 179 aa13.15□□□□□ -0.3
PKP4-201ENST00000389757 LTV1Q96GA3 475 aaPredicted RBP13.15□□□□□ -0.3
PKP4-201ENST00000389757 SNAPC4Q5SXM2 1469 aa13.14□□□□□ -0.31
PKP4-201ENST00000389757 KCNJ4P48050 445 aa13.13□□□□□ -0.31
PKP4-201ENST00000389757 ARHGAP5Q13017 1502 aa13.13□□□□□ -0.31
PKP4-201ENST00000389757 GOLGA6L22H0YM25 854 aa13.13□□□□□ -0.31
PKP4-201ENST00000389757 MINK1Q8N4C8 1332 aaPredicted RBP13.13□□□□□ -0.31
PKP4-201ENST00000389757 STK31Q9BXU1 1019 aa13.13□□□□□ -0.31
PKP4-201ENST00000389757 NLRP13Q86W25 1043 aa13.12□□□□□ -0.31
PKP4-201ENST00000389757 FGD1P98174 961 aa13.12□□□□□ -0.31
PKP4-201ENST00000389757 AFAP1Q8N556 730 aa13.12□□□□□ -0.31
PKP4-201ENST00000389757 SYNJ1O43426 1573 aa13.12□□□□□ -0.31
PKP4-201ENST00000389757 LMOD3Q0VAK6 560 aa13.12□□□□□ -0.31
PKP4-201ENST00000389757 FYCO1Q9BQS8 1478 aa13.11□□□□□ -0.31
PKP4-201ENST00000389757 COG3Q96JB2 828 aa13.11□□□□□ -0.31
PKP4-201ENST00000389757 ERICH3Q5RHP9 1530 aa13.11□□□□□ -0.31
PKP4-201ENST00000389757 DHX57Q6P158 1386 aaKnown RBP13.11□□□□□ -0.31
PKP4-201ENST00000389757 KIF21BO75037 1637 aa13.11□□□□□ -0.31
PKP4-201ENST00000389757 NBR1Q14596 966 aa13.1□□□□□ -0.31
PKP4-201ENST00000389757 LRRC9Q6ZRR7 1453 aa13.1□□□□□ -0.31
PKP4-201ENST00000389757 DNMBPQ6XZF7 1577 aa13.1□□□□□ -0.31
PKP4-201ENST00000389757 NCOA2Q15596 1464 aa13.1□□□□□ -0.31
PKP4-201ENST00000389757 ANKRD50Q9ULJ7 1429 aa13.1□□□□□ -0.31
PKP4-201ENST00000389757 CDK11BP21127 795 aaKnown RBP13.1□□□□□ -0.31
PKP4-201ENST00000389757 DNAJC5BQ9UF47 199 aa13.1□□□□□ -0.31
PKP4-201ENST00000389757 PANK3Q9H999 370 aa13.09□□□□□ -0.31
PKP4-201ENST00000389757 CGNL1Q0VF96 1302 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms