RNA–Protein interactions for RNA: ENST00000380409.2

RIPK1-202, Transcript of receptor interacting serine/threonine kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RIPK1, Length 3,864 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK1-202ENST00000380409 ZNF608Q9ULD9 1512 aaPredicted RBP8.81□□□□□ -1
RIPK1-202ENST00000380409 SMG6Q86US8 1419 aaKnown RBP8.79□□□□□ -1
RIPK1-202ENST00000380409 LAMC3Q9Y6N6 1575 aa8.79□□□□□ -1
RIPK1-202ENST00000380409 URB2Q14146 1524 aaKnown RBP8.79□□□□□ -1
RIPK1-202ENST00000380409 TAF7LQ5H9L4 462 aa8.79□□□□□ -1
RIPK1-202ENST00000380409 SAMD1Q6SPF0 538 aaPredicted RBP8.79□□□□□ -1
RIPK1-202ENST00000380409 NFKBIBQ15653 356 aa8.78□□□□□ -1
RIPK1-202ENST00000380409 ZBED9Q6R2W3 1325 aa8.78□□□□□ -1
RIPK1-202ENST00000380409 LAS1LQ9Y4W2 734 aaKnown RBP8.78□□□□□ -1
RIPK1-202ENST00000380409 ANP32CO43423 234 aa8.77□□□□□ -1.01
RIPK1-202ENST00000380409 HIRIP3Q9BW71 556 aaPredicted RBP8.77□□□□□ -1.01
RIPK1-202ENST00000380409 CLCN1P35523 988 aa8.77□□□□□ -1.01
RIPK1-202ENST00000380409 ZNF326Q5BKZ1 582 aaKnown RBP8.77□□□□□ -1.01
RIPK1-202ENST00000380409 ARAP1Q96P48 1450 aa8.75□□□□□ -1.01
RIPK1-202ENST00000380409 HNRNPUQ00839 825 aaKnown RBP eCLIP8.74□□□□□ -1.01
RIPK1-202ENST00000380409 BACH2Q9BYV9 841 aa8.74□□□□□ -1.01
RIPK1-202ENST00000380409 AKNAQ7Z591 1439 aa8.73□□□□□ -1.01
RIPK1-202ENST00000380409 HSP90AA1P07900 732 aaKnown RBP8.73□□□□□ -1.01
RIPK1-202ENST00000380409 GTF2E1P29083 439 aaPredicted RBP8.73□□□□□ -1.01
RIPK1-202ENST00000380409 TOPBP1Q92547 1522 aa8.73□□□□□ -1.01
RIPK1-202ENST00000380409 FGD5Q6ZNL6 1462 aa8.73□□□□□ -1.01
RIPK1-202ENST00000380409 RAB3GAP2Q9H2M9 1393 aa8.72□□□□□ -1.01
RIPK1-202ENST00000380409 RSPH4AQ5TD94 716 aa8.72□□□□□ -1.01
RIPK1-202ENST00000380409 PDCL3Q9H2J4 239 aa8.72□□□□□ -1.01
RIPK1-202ENST00000380409 FHAD1B1AJZ9 1412 aa8.71□□□□□ -1.01
RIPK1-202ENST00000380409 PAXIP1Q6ZW49 1069 aaPredicted RBP8.71□□□□□ -1.01
RIPK1-202ENST00000380409 ERICH3Q5RHP9 1530 aa8.71□□□□□ -1.02
RIPK1-202ENST00000380409 MS4A1P11836 297 aa8.7□□□□□ -1.02
RIPK1-202ENST00000380409 POLA1P09884 1462 aaPredicted RBP8.7□□□□□ -1.02
RIPK1-202ENST00000380409 TCERG1O14776 1098 aaKnown RBP8.69□□□□□ -1.02
RIPK1-202ENST00000380409 SIN3AQ96ST3 1273 aa8.69□□□□□ -1.02
RIPK1-202ENST00000380409 BRD2P25440 801 aaKnown RBP8.68□□□□□ -1.02
RIPK1-202ENST00000380409 PDE4AP27815 886 aa8.68□□□□□ -1.02
RIPK1-202ENST00000380409 RGS3P49796 1198 aa8.68□□□□□ -1.02
RIPK1-202ENST00000380409 CNTLNQ9NXG0 1405 aa8.68□□□□□ -1.02
RIPK1-202ENST00000380409 STAC3Q96MF2 364 aa8.68□□□□□ -1.02
RIPK1-202ENST00000380409 CCNB3Q8WWL7 1395 aa8.67□□□□□ -1.02
RIPK1-202ENST00000380409 SENP3Q9H4L4 574 aaPredicted RBP8.67□□□□□ -1.02
RIPK1-202ENST00000380409 SENP3-EIF4A1A0A087X0R7 540 aa8.66□□□□□ -1.02
RIPK1-202ENST00000380409 THOC2Q8NI27 1593 aaKnown RBP8.66□□□□□ -1.02
RIPK1-202ENST00000380409 CUX1P39880 1505 aa8.66□□□□□ -1.02
RIPK1-202ENST00000380409 MAP3K1Q13233 1512 aa8.66□□□□□ -1.02
RIPK1-202ENST00000380409 FSD2A1L4K1 749 aa8.66□□□□□ -1.02
RIPK1-202ENST00000380409 IPO4Q8TEX9 1081 aaKnown RBP8.65□□□□□ -1.02
RIPK1-202ENST00000380409 DDRGK1Q96HY6 314 aa8.65□□□□□ -1.02
RIPK1-202ENST00000380409 MYOM3Q5VTT5 1437 aa8.65□□□□□ -1.02
RIPK1-202ENST00000380409 CHIC2Q9UKJ5 165 aa8.65□□□□□ -1.02
RIPK1-202ENST00000380409 CCDC184Q52MB2 194 aa8.65□□□□□ -1.03
RIPK1-202ENST00000380409 NAP1L2Q9ULW6 460 aaPredicted RBP8.65□□□□□ -1.03
RIPK1-202ENST00000380409 RAPGEF2Q9Y4G8 1499 aa8.65□□□□□ -1.03
RIPK1-202ENST00000380409 CFAP43Q8NDM7 1665 aa8.64□□□□□ -1.03
RIPK1-202ENST00000380409 SETD5Q9C0A6 1442 aa8.64□□□□□ -1.03
RIPK1-202ENST00000380409 TPM2P07951 284 aa8.64□□□□□ -1.03
RIPK1-202ENST00000380409 SLC4A1APQ9BWU0 796 aaKnown RBP8.64□□□□□ -1.03
RIPK1-202ENST00000380409 SMAP1Q8IYB5 467 aaPredicted RBP8.64□□□□□ -1.03
RIPK1-202ENST00000380409 PNNQ9H307 717 aaKnown RBP8.64□□□□□ -1.03
RIPK1-202ENST00000380409 FRAT2O75474 233 aaPredicted RBP8.63□□□□□ -1.03
RIPK1-202ENST00000380409 NAP1L5Q96NT1 182 aaPredicted RBP8.63□□□□□ -1.03
RIPK1-202ENST00000380409 ZNF777Q9ULD5 760 aaPredicted RBP8.63□□□□□ -1.03
RIPK1-202ENST00000380409 SNAPC4Q5SXM2 1469 aa8.63□□□□□ -1.03
RIPK1-202ENST00000380409 UTP14CQ5TAP6 766 aaKnown RBP8.62□□□□□ -1.03
RIPK1-202ENST00000380409 GAPVD1Q14C86 1478 aa8.62□□□□□ -1.03
RIPK1-202ENST00000380409 IFT140Q96RY7 1462 aa8.62□□□□□ -1.03
RIPK1-202ENST00000380409 WDR62O43379 1518 aa8.61□□□□□ -1.03
RIPK1-202ENST00000380409 ERBB4Q15303 1308 aa8.61□□□□□ -1.03
RIPK1-202ENST00000380409 NUDCQ9Y266 331 aa8.61□□□□□ -1.03
RIPK1-202ENST00000380409 CHRM1P11229 460 aaPredicted RBP8.6□□□□□ -1.03
RIPK1-202ENST00000380409 BBXQ8WY36 941 aaPredicted RBP8.6□□□□□ -1.03
RIPK1-202ENST00000380409 TIAM1Q13009 1591 aa8.6□□□□□ -1.03
RIPK1-202ENST00000380409 CTTNBP2Q8WZ74 1663 aa8.6□□□□□ -1.03
RIPK1-202ENST00000380409 NCOA1Q15788 1441 aa8.6□□□□□ -1.03
RIPK1-202ENST00000380409 NLRP1Q9C000 1473 aa8.6□□□□□ -1.03
RIPK1-202ENST00000380409 L1TD1Q5T7N2 865 aaKnown RBP8.6□□□□□ -1.03
RIPK1-202ENST00000380409 POGKQ9P215 609 aa8.59□□□□□ -1.03
RIPK1-202ENST00000380409 JPH4Q96JJ6 628 aa8.59□□□□□ -1.03
RIPK1-202ENST00000380409 DNMBPQ6XZF7 1577 aa8.59□□□□□ -1.03
RIPK1-202ENST00000380409 XRCC6P12956 609 aaKnown RBP eCLIP8.58□□□□□ -1.04
RIPK1-202ENST00000380409 KANK4Q5T7N3 995 aaPredicted RBP8.58□□□□□ -1.04
RIPK1-202ENST00000380409 TMEM51Q9NW97 253 aa8.58□□□□□ -1.04
RIPK1-202ENST00000380409 TERF1P54274 439 aa8.58□□□□□ -1.04
RIPK1-202ENST00000380409 NPM1P06748 294 aaKnown RBP eCLIP8.58□□□□□ -1.04
RIPK1-202ENST00000380409 RIPK4P57078 832 aa8.57□□□□□ -1.04
RIPK1-202ENST00000380409 FAM9BQ8IZU0 186 aa8.57□□□□□ -1.04
RIPK1-202ENST00000380409 CHMP4BQ9H444 224 aaKnown RBP8.57□□□□□ -1.04
RIPK1-202ENST00000380409 TOP2BQ02880 1626 aa8.57□□□□□ -1.04
RIPK1-202ENST00000380409 DMTNQ08495 405 aa8.57□□□□□ -1.04
RIPK1-202ENST00000380409 PRKRIP1Q9H875 184 aaPredicted RBP8.56□□□□□ -1.04
RIPK1-202ENST00000380409 BIVM-ERCC5R4GMW8 1640 aa8.56□□□□□ -1.04
RIPK1-202ENST00000380409 E9PCH4 1651 aa8.56□□□□□ -1.04
RIPK1-202ENST00000380409 CNKSR2Q8WXI2 1034 aa8.55□□□□□ -1.04
RIPK1-202ENST00000380409 PPP6R1Q9UPN7 881 aa8.55□□□□□ -1.04
RIPK1-202ENST00000380409 HECW1Q76N89 1606 aa8.55□□□□□ -1.04
RIPK1-202ENST00000380409 KIF27Q86VH2 1401 aa8.55□□□□□ -1.04
RIPK1-202ENST00000380409 CARMIL1Q5VZK9 1371 aa8.55□□□□□ -1.04
RIPK1-202ENST00000380409 VGFO15240 615 aaPredicted RBP8.55□□□□□ -1.04
RIPK1-202ENST00000380409 FOXD1Q16676 465 aa8.55□□□□□ -1.04
RIPK1-202ENST00000380409 EIF4G3O43432 1585 aaKnown RBP8.54□□□□□ -1.04
RIPK1-202ENST00000380409 PRXQ9BXM0 1461 aa8.54□□□□□ -1.04
RIPK1-202ENST00000380409 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.54□□□□□ -1.04
RIPK1-202ENST00000380409 CFAP44Q96MT7 982 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms