RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 RRAGDQ9NQL2 400 aaPredicted RBP12.78□□□□□ -0.36
SF3A3-201ENST00000373019 CARMIL1Q5VZK9 1371 aa12.78□□□□□ -0.36
SF3A3-201ENST00000373019 PRKRIP1Q9H875 184 aaPredicted RBP12.77□□□□□ -0.37
SF3A3-201ENST00000373019 P3H3Q8IVL6 736 aa12.76□□□□□ -0.37
SF3A3-201ENST00000373019 NCOA2Q15596 1464 aa12.76□□□□□ -0.37
SF3A3-201ENST00000373019 TCERG1O14776 1098 aaKnown RBP12.76□□□□□ -0.37
SF3A3-201ENST00000373019 FHAD1B1AJZ9 1412 aa12.76□□□□□ -0.37
SF3A3-201ENST00000373019 KDM5BQ9UGL1 1544 aa12.75□□□□□ -0.37
SF3A3-201ENST00000373019 MRS2Q9HD23 443 aa12.75□□□□□ -0.37
SF3A3-201ENST00000373019 SYNJ2O15056 1496 aa12.74□□□□□ -0.37
SF3A3-201ENST00000373019 NUDCQ9Y266 331 aa12.74□□□□□ -0.37
SF3A3-201ENST00000373019 IGF1RP08069 1367 aa12.74□□□□□ -0.37
SF3A3-201ENST00000373019 CYB5RLQ6IPT4 315 aa12.74□□□□□ -0.37
SF3A3-201ENST00000373019 CNTLNQ9NXG0 1405 aa12.73□□□□□ -0.37
SF3A3-201ENST00000373019 TONSLQ96HA7 1378 aa12.73□□□□□ -0.37
SF3A3-201ENST00000373019 HSP90AA2PQ14568 343 aaPredicted RBP12.73□□□□□ -0.37
SF3A3-201ENST00000373019 ERICH3Q5RHP9 1530 aa12.72□□□□□ -0.37
SF3A3-201ENST00000373019 RRP9O43818 475 aaKnown RBP12.72□□□□□ -0.37
SF3A3-201ENST00000373019 SLC4A3P48751 1232 aa12.71□□□□□ -0.38
SF3A3-201ENST00000373019 MS4A1P11836 297 aa12.7□□□□□ -0.38
SF3A3-201ENST00000373019 DNAJC5Q9H3Z4 198 aa12.7□□□□□ -0.38
SF3A3-201ENST00000373019 FRAT2O75474 233 aaPredicted RBP12.69□□□□□ -0.38
SF3A3-201ENST00000373019 ABCA5Q8WWZ7 1642 aa12.69□□□□□ -0.38
SF3A3-201ENST00000373019 HSPA5P11021 654 aaKnown RBP12.69□□□□□ -0.38
SF3A3-201ENST00000373019 DDRGK1Q96HY6 314 aa12.68□□□□□ -0.38
SF3A3-201ENST00000373019 PRXQ9BXM0 1461 aa12.68□□□□□ -0.38
SF3A3-201ENST00000373019 PHLDB1Q86UU1 1377 aa12.68□□□□□ -0.38
SF3A3-201ENST00000373019 PBRM1Q86U86 1689 aa12.67□□□□□ -0.38
SF3A3-201ENST00000373019 TRHP20396 242 aaPredicted RBP12.67□□□□□ -0.38
SF3A3-201ENST00000373019 GRIN2AQ12879 1464 aa12.66□□□□□ -0.38
SF3A3-201ENST00000373019 ARHGAP35Q9NRY4 1499 aa12.65□□□□□ -0.38
SF3A3-201ENST00000373019 EXOC6Q8TAG9 804 aa12.65□□□□□ -0.38
SF3A3-201ENST00000373019 JPH4Q96JJ6 628 aa12.64□□□□□ -0.39
SF3A3-201ENST00000373019 TIAM1Q13009 1591 aa12.64□□□□□ -0.39
SF3A3-201ENST00000373019 HSP90AA1P07900 732 aaKnown RBP12.63□□□□□ -0.39
SF3A3-201ENST00000373019 CUL7Q14999 1698 aa12.63□□□□□ -0.39
SF3A3-201ENST00000373019 ADAMTS12P58397 1594 aa12.62□□□□□ -0.39
SF3A3-201ENST00000373019 RBM10P98175 930 aaKnown RBP12.62□□□□□ -0.39
SF3A3-201ENST00000373019 FAM50AQ14320 339 aaKnown RBP12.62□□□□□ -0.39
SF3A3-201ENST00000373019 AEBP2Q6ZN18 517 aaPredicted RBP12.62□□□□□ -0.39
SF3A3-201ENST00000373019 SKAP1Q86WV1 359 aa12.62□□□□□ -0.39
SF3A3-201ENST00000373019 NAP1L5Q96NT1 182 aaPredicted RBP12.62□□□□□ -0.39
SF3A3-201ENST00000373019 NCOA1Q15788 1441 aa12.61□□□□□ -0.39
SF3A3-201ENST00000373019 MAP3K1Q13233 1512 aa12.61□□□□□ -0.39
SF3A3-201ENST00000373019 CCDC7Q96M83 1385 aa12.6□□□□□ -0.39
SF3A3-201ENST00000373019 AAMPQ13685 434 aa12.6□□□□□ -0.39
SF3A3-201ENST00000373019 LRRC9Q6ZRR7 1453 aa12.6□□□□□ -0.39
SF3A3-201ENST00000373019 CHD1O14646 1710 aa12.6□□□□□ -0.39
SF3A3-201ENST00000373019 SENP3-EIF4A1A0A087X0R7 540 aa12.59□□□□□ -0.39
SF3A3-201ENST00000373019 CLCN1P35523 988 aa12.59□□□□□ -0.39
SF3A3-201ENST00000373019 POGKQ9P215 609 aa12.59□□□□□ -0.39
SF3A3-201ENST00000373019 A0A0U1RQG5 324 aaPredicted RBP12.59□□□□□ -0.39
SF3A3-201ENST00000373019 RRP1P56182 461 aaKnown RBP12.59□□□□□ -0.39
SF3A3-201ENST00000373019 NPM1P06748 294 aaKnown RBP eCLIP12.58□□□□□ -0.4
SF3A3-201ENST00000373019 PRDM4Q9UKN5 801 aa12.58□□□□□ -0.4
SF3A3-201ENST00000373019 CARMIL2Q6F5E8 1435 aa12.58□□□□□ -0.4
SF3A3-201ENST00000373019 EIF4G2P78344 907 aaKnown RBP eCLIP12.58□□□□□ -0.4
SF3A3-201ENST00000373019 PNNQ9H307 717 aaKnown RBP12.58□□□□□ -0.4
SF3A3-201ENST00000373019 FGD1P98174 961 aa12.57□□□□□ -0.4
SF3A3-201ENST00000373019 UACAQ9BZF9 1416 aa12.56□□□□□ -0.4
SF3A3-201ENST00000373019 KIAA0586Q9BVV6 1533 aa12.55□□□□□ -0.4
SF3A3-201ENST00000373019 NUP160Q12769 1436 aa12.54□□□□□ -0.4
SF3A3-201ENST00000373019 CCDC18Q5T9S5 1454 aa12.54□□□□□ -0.4
SF3A3-201ENST00000373019 PRG4Q92954 1404 aaPredicted RBP12.53□□□□□ -0.4
SF3A3-201ENST00000373019 CENPJQ9HC77 1338 aaPredicted RBP12.52□□□□□ -0.41
SF3A3-201ENST00000373019 XRCC6P12956 609 aaKnown RBP eCLIP12.51□□□□□ -0.41
SF3A3-201ENST00000373019 L1TD1Q5T7N2 865 aaKnown RBP12.51□□□□□ -0.41
SF3A3-201ENST00000373019 POLR1AO95602 1720 aaPredicted RBP12.51□□□□□ -0.41
SF3A3-201ENST00000373019 KIF7Q2M1P5 1343 aa12.51□□□□□ -0.41
SF3A3-201ENST00000373019 DHX29Q7Z478 1369 aaKnown RBP12.5□□□□□ -0.41
SF3A3-201ENST00000373019 PNISRQ8TF01 805 aaKnown RBP12.5□□□□□ -0.41
SF3A3-201ENST00000373019 C8orf34Q49A92 452 aa12.5□□□□□ -0.41
SF3A3-201ENST00000373019 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.5□□□□□ -0.41
SF3A3-201ENST00000373019 CALD1Q05682 793 aaKnown RBP12.5□□□□□ -0.41
SF3A3-201ENST00000373019 PDCL3Q9H2J4 239 aa12.48□□□□□ -0.41
SF3A3-201ENST00000373019 RCAN3Q9UKA8 241 aa12.48□□□□□ -0.41
SF3A3-201ENST00000373019 CEP170Q5SW79 1584 aa12.48□□□□□ -0.41
SF3A3-201ENST00000373019 PANK2Q9BZ23 570 aa12.48□□□□□ -0.41
SF3A3-201ENST00000373019 HFM1A2PYH4 1435 aa12.48□□□□□ -0.41
SF3A3-201ENST00000373019 PTPRKQ15262 1439 aa12.48□□□□□ -0.41
SF3A3-201ENST00000373019 PTPN23Q9H3S7 1636 aa12.48□□□□□ -0.41
SF3A3-201ENST00000373019 PTPRGP23470 1445 aa12.47□□□□□ -0.41
SF3A3-201ENST00000373019 RGS3P49796 1198 aa12.47□□□□□ -0.41
SF3A3-201ENST00000373019 IQGAP2Q13576 1575 aa12.47□□□□□ -0.41
SF3A3-201ENST00000373019 SPATA31E1Q6ZUB1 1445 aa12.47□□□□□ -0.41
SF3A3-201ENST00000373019 ARHGEF11O15085 1522 aa12.46□□□□□ -0.41
SF3A3-201ENST00000373019 DENND4BO75064 1496 aaPredicted RBP12.46□□□□□ -0.41
SF3A3-201ENST00000373019 CFAP43Q8NDM7 1665 aa12.46□□□□□ -0.41
SF3A3-201ENST00000373019 FSD2A1L4K1 749 aa12.46□□□□□ -0.41
SF3A3-201ENST00000373019 KDM2BQ8NHM5 1336 aa12.44□□□□□ -0.42
SF3A3-201ENST00000373019 ERBB4Q15303 1308 aa12.44□□□□□ -0.42
SF3A3-201ENST00000373019 FAM161AQ3B820 660 aa12.44□□□□□ -0.42
SF3A3-201ENST00000373019 LRPPRCP42704 1394 aaKnown RBP12.44□□□□□ -0.42
SF3A3-201ENST00000373019 CLASP1Q7Z460 1538 aa12.43□□□□□ -0.42
SF3A3-201ENST00000373019 NAIPQ13075 1403 aa12.43□□□□□ -0.42
SF3A3-201ENST00000373019 PDE4CQ08493 712 aa12.43□□□□□ -0.42
SF3A3-201ENST00000373019 CNGB1Q14028 1251 aaPredicted RBP12.43□□□□□ -0.42
SF3A3-201ENST00000373019 MYOM3Q5VTT5 1437 aa12.43□□□□□ -0.42
SF3A3-201ENST00000373019 PLIN1O60240 522 aa12.42□□□□□ -0.42
SF3A3-201ENST00000373019 ARID4BQ4LE39 1312 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms