RNA–Protein interactions for RNA: ENST00000370021.1

PRPF38B-201, Transcript of pre-mRNA processing factor 38B, humanhuman

TSL 1 (best) BASIC

Gene PRPF38B, Length 3,728 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38B-201ENST00000370021 GSE1Q14687 1217 aa13.73□□□□□ -0.21
PRPF38B-201ENST00000370021 TCERG1O14776 1098 aaKnown RBP13.73□□□□□ -0.21
PRPF38B-201ENST00000370021 CDCA7LQ96GN5 454 aa13.73□□□□□ -0.21
PRPF38B-201ENST00000370021 LRRC9Q6ZRR7 1453 aa13.73□□□□□ -0.21
PRPF38B-201ENST00000370021 CCDC7Q96M83 1385 aa13.72□□□□□ -0.21
PRPF38B-201ENST00000370021 LRRIQ1Q96JM4 1722 aa13.72□□□□□ -0.21
PRPF38B-201ENST00000370021 CANXP27824 592 aaKnown RBP13.72□□□□□ -0.21
PRPF38B-201ENST00000370021 SLKQ9H2G2 1235 aaPredicted RBP13.72□□□□□ -0.21
PRPF38B-201ENST00000370021 FRAT1Q92837 279 aaPredicted RBP13.72□□□□□ -0.21
PRPF38B-201ENST00000370021 DDRGK1Q96HY6 314 aa13.72□□□□□ -0.21
PRPF38B-201ENST00000370021 CC2D2AQ9P2K1 1620 aa13.71□□□□□ -0.21
PRPF38B-201ENST00000370021 DNAJC5BQ9UF47 199 aa13.71□□□□□ -0.21
PRPF38B-201ENST00000370021 FHAD1B1AJZ9 1412 aa13.71□□□□□ -0.22
PRPF38B-201ENST00000370021 NFKBIBQ15653 356 aa13.7□□□□□ -0.22
PRPF38B-201ENST00000370021 RRP1P56182 461 aaKnown RBP13.7□□□□□ -0.22
PRPF38B-201ENST00000370021 DNMBPQ6XZF7 1577 aa13.69□□□□□ -0.22
PRPF38B-201ENST00000370021 GZF1Q9H116 711 aaPredicted RBP13.68□□□□□ -0.22
PRPF38B-201ENST00000370021 CNTLNQ9NXG0 1405 aa13.68□□□□□ -0.22
PRPF38B-201ENST00000370021 CRBNQ96SW2 442 aa13.68□□□□□ -0.22
PRPF38B-201ENST00000370021 CUL7Q14999 1698 aa13.68□□□□□ -0.22
PRPF38B-201ENST00000370021 NAP1L5Q96NT1 182 aaPredicted RBP13.67□□□□□ -0.22
PRPF38B-201ENST00000370021 ABCA10Q8WWZ4 1543 aa13.67□□□□□ -0.22
PRPF38B-201ENST00000370021 FRAT2O75474 233 aaPredicted RBP13.66□□□□□ -0.22
PRPF38B-201ENST00000370021 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.66□□□□□ -0.223e-7■■■■□ 23.4
PRPF38B-201ENST00000370021 FMN1Q68DA7 1419 aa13.66□□□□□ -0.22
PRPF38B-201ENST00000370021 DCAF11Q8TEB1 546 aa13.65□□□□□ -0.22
PRPF38B-201ENST00000370021 EFCAB5A4FU69 1503 aa13.64□□□□□ -0.23
PRPF38B-201ENST00000370021 BACH2Q9BYV9 841 aa13.64□□□□□ -0.23
PRPF38B-201ENST00000370021 ST20-MTHFSA0A0A6YYL1 179 aa13.63□□□□□ -0.23
PRPF38B-201ENST00000370021 AQRO60306 1485 aaKnown RBP eCLIP13.63□□□□□ -0.232e-7■■■■■ 30.5
PRPF38B-201ENST00000370021 FANCD2Q9BXW9 1451 aa13.63□□□□□ -0.23
PRPF38B-201ENST00000370021 UACAQ9BZF9 1416 aa13.63□□□□□ -0.23
PRPF38B-201ENST00000370021 USP35Q9P2H5 1018 aa13.62□□□□□ -0.23
PRPF38B-201ENST00000370021 FYCO1Q9BQS8 1478 aa13.62□□□□□ -0.23
PRPF38B-201ENST00000370021 PKD2Q13563 968 aa13.62□□□□□ -0.23
PRPF38B-201ENST00000370021 FBLN2P98095 1184 aa13.62□□□□□ -0.23
PRPF38B-201ENST00000370021 NEUROD2Q15784 382 aa13.62□□□□□ -0.23
PRPF38B-201ENST00000370021 SAMD9Q5K651 1589 aa13.61□□□□□ -0.23
PRPF38B-201ENST00000370021 TOPBP1Q92547 1522 aa13.61□□□□□ -0.23
PRPF38B-201ENST00000370021 POLA1P09884 1462 aaPredicted RBP13.61□□□□□ -0.23
PRPF38B-201ENST00000370021 FGD6Q6ZV73 1430 aa13.61□□□□□ -0.23
PRPF38B-201ENST00000370021 ABCA5Q8WWZ7 1642 aa13.61□□□□□ -0.23
PRPF38B-201ENST00000370021 WDR43Q15061 677 aaKnown RBP eCLIP13.6□□□□□ -0.23
PRPF38B-201ENST00000370021 PNISRQ8TF01 805 aaKnown RBP13.6□□□□□ -0.23
PRPF38B-201ENST00000370021 SNAPC4Q5SXM2 1469 aa13.6□□□□□ -0.23
PRPF38B-201ENST00000370021 ZNF644Q9H582 1327 aaPredicted RBP13.6□□□□□ -0.23
PRPF38B-201ENST00000370021 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.58□□□□□ -0.24
PRPF38B-201ENST00000370021 RAD54L2Q9Y4B4 1467 aa13.58□□□□□ -0.24
PRPF38B-201ENST00000370021 CASKIN1Q8WXD9 1431 aa13.57□□□□□ -0.24
PRPF38B-201ENST00000370021 C20orf194Q5TEA3 1177 aa13.57□□□□□ -0.24
PRPF38B-201ENST00000370021 PTPRKQ15262 1439 aa13.56□□□□□ -0.24
PRPF38B-201ENST00000370021 VSIG10Q8N0Z9 540 aa13.55□□□□□ -0.24
PRPF38B-201ENST00000370021 USP47Q96K76 1375 aa13.55□□□□□ -0.24
PRPF38B-201ENST00000370021 SMG6Q86US8 1419 aaKnown RBP13.55□□□□□ -0.24
PRPF38B-201ENST00000370021 CCDC146Q8IYE0 955 aa13.54□□□□□ -0.24
PRPF38B-201ENST00000370021 GLIPR1L2Q4G1C9 344 aa13.54□□□□□ -0.24
PRPF38B-201ENST00000370021 KIF21AQ7Z4S6 1674 aa13.54□□□□□ -0.24
PRPF38B-201ENST00000370021 TDRD9Q8NDG6 1382 aaKnown RBP13.54□□□□□ -0.24
PRPF38B-201ENST00000370021 CFDP1Q9UEE9 299 aaPredicted RBP13.53□□□□□ -0.24
PRPF38B-201ENST00000370021 SENP3Q9H4L4 574 aaPredicted RBP13.53□□□□□ -0.24
PRPF38B-201ENST00000370021 NESP48681 1621 aa13.52□□□□□ -0.24
PRPF38B-201ENST00000370021 NAIPQ13075 1403 aa13.52□□□□□ -0.24
PRPF38B-201ENST00000370021 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.52□□□□□ -0.24
PRPF38B-201ENST00000370021 UPF2Q9HAU5 1272 aaKnown RBP13.52□□□□□ -0.24
PRPF38B-201ENST00000370021 ARID3AQ99856 593 aa13.52□□□□□ -0.25
PRPF38B-201ENST00000370021 URB2Q14146 1524 aaKnown RBP13.52□□□□□ -0.25
PRPF38B-201ENST00000370021 LAMC3Q9Y6N6 1575 aa13.51□□□□□ -0.25
PRPF38B-201ENST00000370021 TNNT2P45379 298 aaPredicted RBP13.51□□□□□ -0.25
PRPF38B-201ENST00000370021 KDM5BQ9UGL1 1544 aa13.5□□□□□ -0.25
PRPF38B-201ENST00000370021 THOC2Q8NI27 1593 aaKnown RBP13.5□□□□□ -0.25
PRPF38B-201ENST00000370021 MS4A1P11836 297 aa13.5□□□□□ -0.25
PRPF38B-201ENST00000370021 ARHGEF11O15085 1522 aa13.5□□□□□ -0.25
PRPF38B-201ENST00000370021 NLRP13Q86W25 1043 aa13.5□□□□□ -0.25
PRPF38B-201ENST00000370021 POGKQ9P215 609 aa13.5□□□□□ -0.25
PRPF38B-201ENST00000370021 MYBBP1AQ9BQG0 1328 aaKnown RBP13.49□□□□□ -0.25
PRPF38B-201ENST00000370021 BECN1Q14457 450 aa13.49□□□□□ -0.25
PRPF38B-201ENST00000370021 FAM161AQ3B820 660 aa13.49□□□□□ -0.25
PRPF38B-201ENST00000370021 GRIN2BQ13224 1484 aa13.49□□□□□ -0.25
PRPF38B-201ENST00000370021 PTPN23Q9H3S7 1636 aa13.48□□□□□ -0.25
PRPF38B-201ENST00000370021 HFM1A2PYH4 1435 aa13.48□□□□□ -0.25
PRPF38B-201ENST00000370021 HSP90AA1P07900 732 aaKnown RBP13.48□□□□□ -0.25
PRPF38B-201ENST00000370021 RALBP1Q15311 655 aa13.47□□□□□ -0.25
PRPF38B-201ENST00000370021 PNNQ9H307 717 aaKnown RBP13.47□□□□□ -0.25
PRPF38B-201ENST00000370021 TARBP1Q13395 1621 aaKnown RBP13.47□□□□□ -0.25
PRPF38B-201ENST00000370021 CLUAP1Q96AJ1 413 aa13.47□□□□□ -0.25
PRPF38B-201ENST00000370021 KTN1Q86UP2 1357 aaKnown RBP13.46□□□□□ -0.26
PRPF38B-201ENST00000370021 ZBTB7CA1YPR0 619 aa13.46□□□□□ -0.26
PRPF38B-201ENST00000370021 PANK3Q9H999 370 aa13.46□□□□□ -0.26
PRPF38B-201ENST00000370021 RSPH6AQ9H0K4 717 aa13.45□□□□□ -0.26
PRPF38B-201ENST00000370021 KNSTRNQ9Y448 316 aa13.45□□□□□ -0.26
PRPF38B-201ENST00000370021 TSPY4P0CV99 314 aa13.45□□□□□ -0.26
PRPF38B-201ENST00000370021 TSPY10P0CW01 314 aa13.45□□□□□ -0.26
PRPF38B-201ENST00000370021 NCOA2Q15596 1464 aa13.45□□□□□ -0.26
PRPF38B-201ENST00000370021 GCC2Q8IWJ2 1684 aa13.45□□□□□ -0.26
PRPF38B-201ENST00000370021 BCL2L13Q9BXK5 485 aa13.44□□□□□ -0.26
PRPF38B-201ENST00000370021 NCOA1Q15788 1441 aa13.44□□□□□ -0.26
PRPF38B-201ENST00000370021 MAGI3Q5TCQ9 1506 aa13.44□□□□□ -0.26
PRPF38B-201ENST00000370021 MYOM3Q5VTT5 1437 aa13.44□□□□□ -0.26
PRPF38B-201ENST00000370021 SUPT6HQ7KZ85 1726 aaKnown RBP13.44□□□□□ -0.26
PRPF38B-201ENST00000370021 KIF15Q9NS87 1388 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms