RNA–Protein interactions for RNA: ENST00000366595.7

NID1-202, Transcript of nidogen 1, humanhuman

TSL 1 (best) BASIC

Gene NID1, Length 5,412 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NID1-202ENST00000366595 SENP3-EIF4A1A0A087X0R7 540 aa21.04■□□□□ 0.96
NID1-202ENST00000366595 TPM3P06753 285 aa21.04■□□□□ 0.96
NID1-202ENST00000366595 CHMP7Q8WUX9 453 aaPredicted RBP21.03■□□□□ 0.96
NID1-202ENST00000366595 CC2D1BQ5T0F9 858 aaKnown RBP21.03■□□□□ 0.96
NID1-202ENST00000366595 GOLGA3Q08378 1498 aa21.03■□□□□ 0.96
NID1-202ENST00000366595 GZF1Q9H116 711 aaPredicted RBP21.02■□□□□ 0.96
NID1-202ENST00000366595 ARID3AQ99856 593 aa21.01■□□□□ 0.95
NID1-202ENST00000366595 CFDP1Q9UEE9 299 aaPredicted RBP21■□□□□ 0.95
NID1-202ENST00000366595 NCBP3Q53F19 620 aaKnown RBP21■□□□□ 0.95
NID1-202ENST00000366595 PMFBP1Q8TBY8 1022 aa21■□□□□ 0.95
NID1-202ENST00000366595 CALRP27797 417 aaKnown RBP20.99■□□□□ 0.95
NID1-202ENST00000366595 CCDC180Q9P1Z9 1646 aa20.99■□□□□ 0.95
NID1-202ENST00000366595 HDAC5Q9UQL6 1122 aa20.99■□□□□ 0.95
NID1-202ENST00000366595 GPS2Q13227 327 aa20.98■□□□□ 0.95
NID1-202ENST00000366595 IPO9Q96P70 1041 aaKnown RBP20.98■□□□□ 0.95
NID1-202ENST00000366595 SLKQ9H2G2 1235 aaPredicted RBP20.98■□□□□ 0.95
NID1-202ENST00000366595 ZCCHC6Q5VYS8 1495 aaKnown RBP20.98■□□□□ 0.95
NID1-202ENST00000366595 CEP89Q96ST8 783 aa20.97■□□□□ 0.95
NID1-202ENST00000366595 ISY1Q9ULR0 285 aaKnown RBP20.97■□□□□ 0.95
NID1-202ENST00000366595 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.96■□□□□ 0.95
NID1-202ENST00000366595 RTF1Q92541 710 aaKnown RBP20.96■□□□□ 0.95
NID1-202ENST00000366595 KIF3AQ9Y496 699 aa20.95■□□□□ 0.94
NID1-202ENST00000366595 CEP162Q5TB80 1403 aa20.95■□□□□ 0.94
NID1-202ENST00000366595 DDX11L8A8MPP1 907 aa20.94■□□□□ 0.94
NID1-202ENST00000366595 MORC1Q86VD1 984 aa20.94■□□□□ 0.94
NID1-202ENST00000366595 GPATCH3Q96I76 525 aa20.93■□□□□ 0.94
NID1-202ENST00000366595 LMOD2Q6P5Q4 547 aa20.92■□□□□ 0.94
NID1-202ENST00000366595 RCAN3Q9UKA8 241 aa20.92■□□□□ 0.94
NID1-202ENST00000366595 KTN1Q86UP2 1357 aaKnown RBP20.91■□□□□ 0.94
NID1-202ENST00000366595 CHMP4CQ96CF2 233 aa20.9■□□□□ 0.94
NID1-202ENST00000366595 KCNH8Q96L42 1107 aa20.9■□□□□ 0.94
NID1-202ENST00000366595 HMMRO75330 724 aa20.89■□□□□ 0.93
NID1-202ENST00000366595 CCDC70Q6NSX1 233 aa20.89■□□□□ 0.93
NID1-202ENST00000366595 SENP3Q9H4L4 574 aaPredicted RBP20.89■□□□□ 0.93
NID1-202ENST00000366595 HDGFP51858 240 aaKnown RBP20.88■□□□□ 0.93
NID1-202ENST00000366595 PRM3Q9NNZ6 103 aa20.88■□□□□ 0.93
NID1-202ENST00000366595 SKOR2Q2VWA4 1001 aaPredicted RBP20.87■□□□□ 0.93
NID1-202ENST00000366595 HSP90B1P14625 803 aaKnown RBP20.87■□□□□ 0.93
NID1-202ENST00000366595 ST18O60284 1047 aa20.86■□□□□ 0.93
NID1-202ENST00000366595 ITPRIPQ8IWB1 547 aa20.85■□□□□ 0.93
NID1-202ENST00000366595 RALBP1Q15311 655 aa20.85■□□□□ 0.93
NID1-202ENST00000366595 TSR1Q2NL82 804 aaKnown RBP20.84■□□□□ 0.93
NID1-202ENST00000366595 RASSF8Q8NHQ8 419 aa20.84■□□□□ 0.93
NID1-202ENST00000366595 MFAP1P55081 439 aaKnown RBP20.83■□□□□ 0.93
NID1-202ENST00000366595 SCRIBQ14160 1630 aa20.83■□□□□ 0.92
NID1-202ENST00000366595 SIN3AQ96ST3 1273 aa20.83■□□□□ 0.92
NID1-202ENST00000366595 ATP6V1DQ9Y5K8 247 aa20.82■□□□□ 0.92
NID1-202ENST00000366595 KANK1Q14678 1352 aa20.82■□□□□ 0.92
NID1-202ENST00000366595 APBB1O00213 710 aa20.82■□□□□ 0.92
NID1-202ENST00000366595 TPM1P09493 284 aa20.81■□□□□ 0.92
NID1-202ENST00000366595 TEX35Q5T0J7 233 aa20.81■□□□□ 0.92
NID1-202ENST00000366595 VSIG10Q8N0Z9 540 aa20.81■□□□□ 0.92
NID1-202ENST00000366595 KIF16BQ96L93 1317 aa20.81■□□□□ 0.92
NID1-202ENST00000366595 TNIKQ9UKE5 1360 aa20.8■□□□□ 0.92
NID1-202ENST00000366595 ZNF771Q7L3S4 317 aaPredicted RBP20.79■□□□□ 0.92
NID1-202ENST00000366595 HDGFL2Q7Z4V5 671 aaPredicted RBP20.79■□□□□ 0.92
NID1-202ENST00000366595 SRPK2P78362 688 aaKnown RBP20.78■□□□□ 0.92
NID1-202ENST00000366595 SF3A1Q15459 793 aaKnown RBP20.78■□□□□ 0.92
NID1-202ENST00000366595 STK31Q9BXU1 1019 aa20.78■□□□□ 0.92
NID1-202ENST00000366595 PDE3BQ13370 1112 aa20.78■□□□□ 0.92
NID1-202ENST00000366595 GORABQ5T7V8 394 aa20.77■□□□□ 0.92
NID1-202ENST00000366595 GOLGA6L19H0YKK7 550 aa20.77■□□□□ 0.92
NID1-202ENST00000366595 DCAF11Q8TEB1 546 aa20.77■□□□□ 0.92
NID1-202ENST00000366595 TPM2P07951 284 aa20.76■□□□□ 0.91
NID1-202ENST00000366595 TSHZ2Q9NRE2 1034 aa20.75■□□□□ 0.91
NID1-202ENST00000366595 TRIM6-TRIM34B2RNG4 842 aa20.74■□□□□ 0.91
NID1-202ENST00000366595 CEP164Q9UPV0 1460 aa20.74■□□□□ 0.91
NID1-202ENST00000366595 TPD52L1Q16890 204 aaPredicted RBP20.73■□□□□ 0.91
NID1-202ENST00000366595 SPAG9O60271 1321 aaKnown RBP20.72■□□□□ 0.91
NID1-202ENST00000366595 BECN2A8MW95 431 aa20.72■□□□□ 0.91
NID1-202ENST00000366595 GSE1Q14687 1217 aa20.72■□□□□ 0.91
NID1-202ENST00000366595 NOM1Q5C9Z4 860 aaKnown RBP20.72■□□□□ 0.91
NID1-202ENST00000366595 CDR1P51861 262 aa20.71■□□□□ 0.91
NID1-202ENST00000366595 RRP12Q5JTH9 1297 aaKnown RBP20.71■□□□□ 0.91
NID1-202ENST00000366595 TMX4Q9H1E5 349 aaPredicted RBP20.71■□□□□ 0.91
NID1-202ENST00000366595 CCNB3Q8WWL7 1395 aa20.71■□□□□ 0.91
NID1-202ENST00000366595 U2AF1L5P0DN76 240 aaPredicted RBP20.7■□□□□ 0.9
NID1-202ENST00000366595 U2AF1Q01081 240 aaKnown RBP eCLIP20.7■□□□□ 0.9
NID1-202ENST00000366595 CREBRFQ8IUR6 639 aa20.7■□□□□ 0.9
NID1-202ENST00000366595 HSPA5P11021 654 aaKnown RBP20.7■□□□□ 0.9
NID1-202ENST00000366595 DDX49Q9Y6V7 483 aaKnown RBP20.7■□□□□ 0.9
NID1-202ENST00000366595 MYO15BQ96JP2 1530 aa20.69■□□□□ 0.9
NID1-202ENST00000366595 IPO7O95373 1038 aaKnown RBP20.69■□□□□ 0.9
NID1-202ENST00000366595 PDE4CQ08493 712 aa20.69■□□□□ 0.9
NID1-202ENST00000366595 CCAR2Q8N163 923 aaKnown RBP20.69■□□□□ 0.9
NID1-202ENST00000366595 SMC4Q9NTJ3 1288 aa20.69■□□□□ 0.9
NID1-202ENST00000366595 PHLDB1Q86UU1 1377 aa20.69■□□□□ 0.9
NID1-202ENST00000366595 ACBD3Q9H3P7 528 aa20.68■□□□□ 0.9
NID1-202ENST00000366595 KIF27Q86VH2 1401 aa20.67■□□□□ 0.9
NID1-202ENST00000366595 LMOD3Q0VAK6 560 aa20.67■□□□□ 0.9
NID1-202ENST00000366595 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.67■□□□□ 0.9
NID1-202ENST00000366595 FHAD1B1AJZ9 1412 aa20.67■□□□□ 0.9
NID1-202ENST00000366595 MARCH6O60337 910 aa20.66■□□□□ 0.9
NID1-202ENST00000366595 H3BQV1 296 aa20.65■□□□□ 0.9
NID1-202ENST00000366595 TAF7LQ5H9L4 462 aa20.65■□□□□ 0.9
NID1-202ENST00000366595 IFFO2Q5TF58 517 aa20.65■□□□□ 0.9
NID1-202ENST00000366595 PES1O00541 588 aaKnown RBP20.64■□□□□ 0.9
NID1-202ENST00000366595 CENPJQ9HC77 1338 aaPredicted RBP20.64■□□□□ 0.89
NID1-202ENST00000366595 ANKRD20A12PQ8NF67 263 aa20.64■□□□□ 0.89
NID1-202ENST00000366595 ARGLU1Q9NWB6 273 aaPredicted RBP20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 142.2 ms