RNA–Protein interactions for RNA: ENST00000355815.8

SREBF1-202, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SREBF1, Length 4,253 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-202ENST00000355815 PRKRIP1Q9H875 184 aaPredicted RBP18.59■□□□□ 0.57
SREBF1-202ENST00000355815 CC2D2AQ9P2K1 1620 aa18.59■□□□□ 0.57
SREBF1-202ENST00000355815 PLPPR3Q6T4P5 718 aa18.59■□□□□ 0.57
SREBF1-202ENST00000355815 TOPBP1Q92547 1522 aa18.58■□□□□ 0.57
SREBF1-202ENST00000355815 ST20-MTHFSA0A0A6YYL1 179 aa18.58■□□□□ 0.57
SREBF1-202ENST00000355815 WDR43Q15061 677 aaKnown RBP eCLIP18.58■□□□□ 0.574e-6■■■□□ 17.4
SREBF1-202ENST00000355815 NCOA2Q15596 1464 aa18.58■□□□□ 0.57
SREBF1-202ENST00000355815 HMGXB3Q12766 1538 aa18.58■□□□□ 0.57
SREBF1-202ENST00000355815 CASKIN1Q8WXD9 1431 aa18.58■□□□□ 0.56
SREBF1-202ENST00000355815 ANP32BQ92688 251 aaKnown RBP18.57■□□□□ 0.56
SREBF1-202ENST00000355815 MYOM3Q5VTT5 1437 aa18.57■□□□□ 0.56
SREBF1-202ENST00000355815 NEUROD2Q15784 382 aa18.57■□□□□ 0.56
SREBF1-202ENST00000355815 NAP1L5Q96NT1 182 aaPredicted RBP18.57■□□□□ 0.56
SREBF1-202ENST00000355815 NBPF8Q3BBV2 869 aa18.56■□□□□ 0.56
SREBF1-202ENST00000355815 ANO8Q9HCE9 1232 aaPredicted RBP18.56■□□□□ 0.56
SREBF1-202ENST00000355815 TIAM1Q13009 1591 aa18.55■□□□□ 0.56
SREBF1-202ENST00000355815 UPF2Q9HAU5 1272 aaKnown RBP18.53■□□□□ 0.56
SREBF1-202ENST00000355815 UACAQ9BZF9 1416 aa18.52■□□□□ 0.56
SREBF1-202ENST00000355815 NPM1P06748 294 aaKnown RBP eCLIP18.52■□□□□ 0.56
SREBF1-202ENST00000355815 C11orf95C9JLR9 678 aaPredicted RBP18.5■□□□□ 0.55
SREBF1-202ENST00000355815 KNSTRNQ9Y448 316 aa18.5■□□□□ 0.55
SREBF1-202ENST00000355815 ERICH6BQ5W0A0 696 aa18.49■□□□□ 0.55
SREBF1-202ENST00000355815 KIF7Q2M1P5 1343 aa18.48■□□□□ 0.55
SREBF1-202ENST00000355815 ANKRD30AQ9BXX3 1397 aa18.47■□□□□ 0.55
SREBF1-202ENST00000355815 PPM1GO15355 546 aaPredicted RBP18.47■□□□□ 0.55
SREBF1-202ENST00000355815 RGS3P49796 1198 aa18.46■□□□□ 0.55
SREBF1-202ENST00000355815 CARMIL2Q6F5E8 1435 aa18.45■□□□□ 0.54
SREBF1-202ENST00000355815 ROCK2O75116 1388 aaKnown RBP18.45■□□□□ 0.54
SREBF1-202ENST00000355815 STAG3Q9UJ98 1225 aa18.44■□□□□ 0.54
SREBF1-202ENST00000355815 PCF11O94913 1555 aaKnown RBP18.44■□□□□ 0.54
SREBF1-202ENST00000355815 SAFB2Q14151 953 aaKnown RBP eCLIP18.44■□□□□ 0.54
SREBF1-202ENST00000355815 FYCO1Q9BQS8 1478 aa18.44■□□□□ 0.54
SREBF1-202ENST00000355815 NAIPQ13075 1403 aa18.42■□□□□ 0.54
SREBF1-202ENST00000355815 TRIM44Q96DX7 344 aaPredicted RBP18.42■□□□□ 0.54
SREBF1-202ENST00000355815 PTPRKQ15262 1439 aa18.41■□□□□ 0.54
SREBF1-202ENST00000355815 USP47Q96K76 1375 aa18.4■□□□□ 0.54
SREBF1-202ENST00000355815 CCDC7Q96M83 1385 aa18.39■□□□□ 0.54
SREBF1-202ENST00000355815 NUTM2DQ5VT03 806 aaPredicted RBP18.39■□□□□ 0.53
SREBF1-202ENST00000355815 GGT6Q6P531 493 aa18.39■□□□□ 0.53
SREBF1-202ENST00000355815 DDRGK1Q96HY6 314 aa18.39■□□□□ 0.53
SREBF1-202ENST00000355815 CDK13Q14004 1512 aaKnown RBP18.39■□□□□ 0.53
SREBF1-202ENST00000355815 PRG4Q92954 1404 aaPredicted RBP18.39■□□□□ 0.53
SREBF1-202ENST00000355815 BIVM-ERCC5R4GMW8 1640 aa18.39■□□□□ 0.53
SREBF1-202ENST00000355815 PLIN1O60240 522 aa18.38■□□□□ 0.53
SREBF1-202ENST00000355815 TMF1P82094 1093 aa18.38■□□□□ 0.53
SREBF1-202ENST00000355815 HFM1A2PYH4 1435 aa18.38■□□□□ 0.53
SREBF1-202ENST00000355815 SLC24A1O60721 1099 aa18.37■□□□□ 0.53
SREBF1-202ENST00000355815 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.37■□□□□ 0.53
SREBF1-202ENST00000355815 ABCA10Q8WWZ4 1543 aa18.35■□□□□ 0.53
SREBF1-202ENST00000355815 KIF3BO15066 747 aa18.35■□□□□ 0.53
SREBF1-202ENST00000355815 ARID3AQ99856 593 aa18.34■□□□□ 0.53
SREBF1-202ENST00000355815 NUDCQ9Y266 331 aa18.34■□□□□ 0.53
SREBF1-202ENST00000355815 NBPF1Q3BBV0 1214 aa18.34■□□□□ 0.53
SREBF1-202ENST00000355815 PANK3Q9H999 370 aa18.34■□□□□ 0.53
SREBF1-202ENST00000355815 MAPKBP1O60336 1514 aa18.33■□□□□ 0.53
SREBF1-202ENST00000355815 PRDM2Q13029 1718 aa18.33■□□□□ 0.52
SREBF1-202ENST00000355815 CCDC146Q8IYE0 955 aa18.33■□□□□ 0.52
SREBF1-202ENST00000355815 FRAT1Q92837 279 aaPredicted RBP18.33■□□□□ 0.52
SREBF1-202ENST00000355815 RCAN3Q9UKA8 241 aa18.33■□□□□ 0.52
SREBF1-202ENST00000355815 URB2Q14146 1524 aaKnown RBP18.32■□□□□ 0.52
SREBF1-202ENST00000355815 DNMBPQ6XZF7 1577 aa18.32■□□□□ 0.52
SREBF1-202ENST00000355815 PTPRGP23470 1445 aa18.31■□□□□ 0.52
SREBF1-202ENST00000355815 EFCAB2Q5VUJ9 269 aa18.3■□□□□ 0.52
SREBF1-202ENST00000355815 SPRYD3Q8NCJ5 442 aa18.3■□□□□ 0.52
SREBF1-202ENST00000355815 AMER1Q5JTC6 1135 aaPredicted RBP18.3■□□□□ 0.52
SREBF1-202ENST00000355815 TPRNQ4KMQ1 711 aa18.29■□□□□ 0.52
SREBF1-202ENST00000355815 KTN1Q86UP2 1357 aaKnown RBP18.28■□□□□ 0.52
SREBF1-202ENST00000355815 PLEKHG5O94827 1062 aa18.28■□□□□ 0.52
SREBF1-202ENST00000355815 NCLP19338 710 aaKnown RBP18.28■□□□□ 0.52
SREBF1-202ENST00000355815 STK26Q9P289 416 aa18.27■□□□□ 0.52
SREBF1-202ENST00000355815 EXOC6Q8TAG9 804 aa18.27■□□□□ 0.52
SREBF1-202ENST00000355815 BECN1Q14457 450 aa18.26■□□□□ 0.51
SREBF1-202ENST00000355815 ZBED9Q6R2W3 1325 aa18.26■□□□□ 0.51
SREBF1-202ENST00000355815 ANKRD50Q9ULJ7 1429 aa18.26■□□□□ 0.51
SREBF1-202ENST00000355815 GRIN2BQ13224 1484 aa18.26■□□□□ 0.51
SREBF1-202ENST00000355815 NLRP13Q86W25 1043 aa18.25■□□□□ 0.51
SREBF1-202ENST00000355815 KIF15Q9NS87 1388 aa18.25■□□□□ 0.51
SREBF1-202ENST00000355815 EFCAB5A4FU69 1503 aa18.25■□□□□ 0.51
SREBF1-202ENST00000355815 GZF1Q9H116 711 aaPredicted RBP18.24■□□□□ 0.51
SREBF1-202ENST00000355815 CNTLNQ9NXG0 1405 aa18.24■□□□□ 0.51
SREBF1-202ENST00000355815 AFAP1Q8N556 730 aa18.24■□□□□ 0.51
SREBF1-202ENST00000355815 RALBP1Q15311 655 aa18.24■□□□□ 0.51
SREBF1-202ENST00000355815 CDCA7LQ96GN5 454 aa18.24■□□□□ 0.51
SREBF1-202ENST00000355815 EPRSP07814 1512 aaKnown RBP18.24■□□□□ 0.51
SREBF1-202ENST00000355815 IPO9Q96P70 1041 aaKnown RBP18.23■□□□□ 0.51
SREBF1-202ENST00000355815 ZNF608Q9ULD9 1512 aaPredicted RBP18.23■□□□□ 0.51
SREBF1-202ENST00000355815 SPAG9O60271 1321 aaKnown RBP18.22■□□□□ 0.51
SREBF1-202ENST00000355815 SLC4A3P48751 1232 aa18.22■□□□□ 0.51
SREBF1-202ENST00000355815 CDCA8Q53HL2 280 aa18.22■□□□□ 0.51
SREBF1-202ENST00000355815 ZBTB7CA1YPR0 619 aa18.22■□□□□ 0.51
SREBF1-202ENST00000355815 MLECQ14165 292 aa18.22■□□□□ 0.51
SREBF1-202ENST00000355815 CCDC144AA2RUR9 1427 aa18.21■□□□□ 0.51
SREBF1-202ENST00000355815 U2SURPO15042 1029 aaKnown RBP18.21■□□□□ 0.51
SREBF1-202ENST00000355815 SLKQ9H2G2 1235 aaPredicted RBP18.2■□□□□ 0.5
SREBF1-202ENST00000355815 ESF1Q9H501 851 aaKnown RBP18.2■□□□□ 0.5
SREBF1-202ENST00000355815 TRAK1Q9UPV9 953 aa18.2■□□□□ 0.5
SREBF1-202ENST00000355815 PLB1Q6P1J6 1458 aa18.19■□□□□ 0.5
SREBF1-202ENST00000355815 SNAPC4Q5SXM2 1469 aa18.19■□□□□ 0.5
SREBF1-202ENST00000355815 VSIG10Q8N0Z9 540 aa18.18■□□□□ 0.5
SREBF1-202ENST00000355815 MYBBP1AQ9BQG0 1328 aaKnown RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms