RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 CCER2I3L3R5 266 aa22.38■■□□□ 1.17
HMGA1-202ENST00000347617 HFM1A2PYH4 1435 aa22.37■■□□□ 1.17
HMGA1-202ENST00000347617 ITSN2Q9NZM3 1697 aa22.36■■□□□ 1.17
HMGA1-202ENST00000347617 PTPRKQ15262 1439 aa22.36■■□□□ 1.17
HMGA1-202ENST00000347617 AKNAQ7Z591 1439 aa22.36■■□□□ 1.17
HMGA1-202ENST00000347617 BCL11AQ9H165 835 aa22.35■■□□□ 1.17
HMGA1-202ENST00000347617 GPATCH8Q9UKJ3 1502 aaKnown RBP22.35■■□□□ 1.17
HMGA1-202ENST00000347617 KIF14Q15058 1648 aa22.34■■□□□ 1.17
HMGA1-202ENST00000347617 OSCARQ8IYS5 282 aa22.34■■□□□ 1.17
HMGA1-202ENST00000347617 ABCC10Q5T3U5 1492 aa22.33■■□□□ 1.16
HMGA1-202ENST00000347617 FKBP8Q14318 412 aa22.32■■□□□ 1.16
HMGA1-202ENST00000347617 CFDP1Q9UEE9 299 aaPredicted RBP22.29■■□□□ 1.16
HMGA1-202ENST00000347617 NAIPQ13075 1403 aa22.28■■□□□ 1.16
HMGA1-202ENST00000347617 KDM5BQ9UGL1 1544 aa22.28■■□□□ 1.16
HMGA1-202ENST00000347617 ROCK1Q13464 1354 aa22.28■■□□□ 1.16
HMGA1-202ENST00000347617 DNMT1P26358 1616 aaKnown RBP22.26■■□□□ 1.15
HMGA1-202ENST00000347617 DAPK1P53355 1430 aa22.24■■□□□ 1.15
HMGA1-202ENST00000347617 PPP1R15AO75807 674 aaPredicted RBP22.24■■□□□ 1.15
HMGA1-202ENST00000347617 RBM19Q9Y4C8 960 aaKnown RBP22.23■■□□□ 1.15
HMGA1-202ENST00000347617 ABCC5O15440 1437 aa22.23■■□□□ 1.15
HMGA1-202ENST00000347617 CDC42BPAQ5VT25 1732 aa22.22■■□□□ 1.15
HMGA1-202ENST00000347617 CAMSAP2Q08AD1 1489 aa22.22■■□□□ 1.15
HMGA1-202ENST00000347617 GCC2Q8IWJ2 1684 aa22.2■■□□□ 1.15
HMGA1-202ENST00000347617 KCNH8Q96L42 1107 aa22.2■■□□□ 1.14
HMGA1-202ENST00000347617 DNAJC5Q9H3Z4 198 aa22.18■■□□□ 1.14
HMGA1-202ENST00000347617 ZNF644Q9H582 1327 aaPredicted RBP22.18■■□□□ 1.14
HMGA1-202ENST00000347617 ZCCHC11Q5TAX3 1644 aaKnown RBP22.18■■□□□ 1.14
HMGA1-202ENST00000347617 ANP32CO43423 234 aa22.17■■□□□ 1.14
HMGA1-202ENST00000347617 DDX10Q13206 875 aaKnown RBP22.17■■□□□ 1.14
HMGA1-202ENST00000347617 RSPH4AQ5TD94 716 aa22.16■■□□□ 1.14
HMGA1-202ENST00000347617 BCANQ96GW7 911 aa22.16■■□□□ 1.14
HMGA1-202ENST00000347617 ADGRL2O95490 1459 aa22.14■■□□□ 1.13
HMGA1-202ENST00000347617 PREX2Q70Z35 1606 aa22.13■■□□□ 1.13
HMGA1-202ENST00000347617 MYT1LQ9UL68 1186 aa22.13■■□□□ 1.13
HMGA1-202ENST00000347617 FANCIQ9NVI1 1328 aa22.13■■□□□ 1.13
HMGA1-202ENST00000347617 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.12■■□□□ 1.138e-9■■■■□ 20.1
HMGA1-202ENST00000347617 SHANK2Q9UPX8 1470 aa22.12■■□□□ 1.13
HMGA1-202ENST00000347617 ERICH6BQ5W0A0 696 aa22.12■■□□□ 1.13
HMGA1-202ENST00000347617 CHIC2Q9UKJ5 165 aa22.12■■□□□ 1.13
HMGA1-202ENST00000347617 RRP7BPQ9NSQ0 103 aa22.11■■□□□ 1.13
HMGA1-202ENST00000347617 ARHGEF5Q12774 1597 aa22.11■■□□□ 1.13
HMGA1-202ENST00000347617 CROCC2H7BZ55 1655 aa22.09■■□□□ 1.13
HMGA1-202ENST00000347617 NCOA1Q15788 1441 aa22.09■■□□□ 1.13
HMGA1-202ENST00000347617 CDC42BPBQ9Y5S2 1711 aa22.09■■□□□ 1.13
HMGA1-202ENST00000347617 ZNF777Q9ULD5 760 aaPredicted RBP22.08■■□□□ 1.13
HMGA1-202ENST00000347617 ADGBQ8N7X0 1667 aa22.08■■□□□ 1.12
HMGA1-202ENST00000347617 PLEKHH2Q8IVE3 1493 aa22.07■■□□□ 1.12
HMGA1-202ENST00000347617 KIAA1107Q9UPP5 1409 aa22.06■■□□□ 1.12
HMGA1-202ENST00000347617 MBD5Q9P267 1494 aa22.05■■□□□ 1.12
HMGA1-202ENST00000347617 ANKRD30AQ9BXX3 1397 aa22.05■■□□□ 1.12
HMGA1-202ENST00000347617 PLCH2O75038 1416 aa22.05■■□□□ 1.12
HMGA1-202ENST00000347617 TTC37Q6PGP7 1564 aa22.05■■□□□ 1.12
HMGA1-202ENST00000347617 ARAP3Q8WWN8 1544 aa22.05■■□□□ 1.12
HMGA1-202ENST00000347617 MYO5CQ9NQX4 1742 aa22.04■■□□□ 1.12
HMGA1-202ENST00000347617 WDR7Q9Y4E6 1490 aa22.02■■□□□ 1.12
HMGA1-202ENST00000347617 TSPY4P0CV99 314 aa22.02■■□□□ 1.12
HMGA1-202ENST00000347617 TSPY10P0CW01 314 aa22.02■■□□□ 1.12
HMGA1-202ENST00000347617 SAMD9LQ8IVG5 1584 aa22.02■■□□□ 1.12
HMGA1-202ENST00000347617 ARHGAP5Q13017 1502 aa22■■□□□ 1.11
HMGA1-202ENST00000347617 CCDC141Q6ZP82 1450 aa21.99■■□□□ 1.11
HMGA1-202ENST00000347617 C9orf84Q5VXU9 1444 aa21.99■■□□□ 1.11
HMGA1-202ENST00000347617 KDM6BO15054 1643 aa21.98■■□□□ 1.11
HMGA1-202ENST00000347617 EFCAB2Q5VUJ9 269 aa21.98■■□□□ 1.11
HMGA1-202ENST00000347617 SIN3AQ96ST3 1273 aa21.98■■□□□ 1.11
HMGA1-202ENST00000347617 MAST1Q9Y2H9 1570 aa21.96■■□□□ 1.11
HMGA1-202ENST00000347617 NPM1P06748 294 aaKnown RBP eCLIP21.96■■□□□ 1.11
HMGA1-202ENST00000347617 HNRNPMP52272 730 aaKnown RBP eCLIP21.95■■□□□ 1.1
HMGA1-202ENST00000347617 TONSLQ96HA7 1378 aa21.94■■□□□ 1.1
HMGA1-202ENST00000347617 MPHOSPH9Q99550 1183 aa21.94■■□□□ 1.1
HMGA1-202ENST00000347617 TRIM52Q96A61 297 aa21.93■■□□□ 1.1
HMGA1-202ENST00000347617 ABCA9Q8IUA7 1624 aa21.93■■□□□ 1.1
HMGA1-202ENST00000347617 ERICH6Q7L0X2 663 aa21.92■■□□□ 1.1
HMGA1-202ENST00000347617 ASXL2Q76L83 1435 aa21.92■■□□□ 1.1
HMGA1-202ENST00000347617 ANKRD50Q9ULJ7 1429 aa21.92■■□□□ 1.1
HMGA1-202ENST00000347617 DENND4BO75064 1496 aaPredicted RBP21.9■■□□□ 1.1
HMGA1-202ENST00000347617 SYCP2Q9BX26 1530 aa21.89■■□□□ 1.09
HMGA1-202ENST00000347617 MSH5O43196 834 aa21.88■■□□□ 1.09
HMGA1-202ENST00000347617 KIF15Q9NS87 1388 aa21.86■■□□□ 1.09
HMGA1-202ENST00000347617 ABCC1P33527 1531 aa21.86■■□□□ 1.09
HMGA1-202ENST00000347617 PLXNC1O60486 1568 aa21.84■■□□□ 1.09
HMGA1-202ENST00000347617 ARHGEF12Q9NZN5 1544 aa21.84■■□□□ 1.09
HMGA1-202ENST00000347617 KDM5DQ9BY66 1539 aa21.83■■□□□ 1.09
HMGA1-202ENST00000347617 PPP4R2Q9NY27 417 aa21.82■■□□□ 1.08
HMGA1-202ENST00000347617 RTEL1-TNFRSF6BF6WH68 1400 aa21.82■■□□□ 1.08
HMGA1-202ENST00000347617 PZPP20742 1482 aa21.82■■□□□ 1.08
HMGA1-202ENST00000347617 SLC4A1APQ9BWU0 796 aaKnown RBP21.81■■□□□ 1.08
HMGA1-202ENST00000347617 ANKRD30BQ9BXX2 1392 aa21.81■■□□□ 1.08
HMGA1-202ENST00000347617 FANCAO15360 1455 aa21.79■■□□□ 1.08
HMGA1-202ENST00000347617 HNRNPUQ00839 825 aaKnown RBP eCLIP21.77■■□□□ 1.08
HMGA1-202ENST00000347617 DUOX2Q9NRD8 1548 aa21.76■■□□□ 1.07
HMGA1-202ENST00000347617 TRAPPC8Q9Y2L5 1435 aa21.74■■□□□ 1.07
HMGA1-202ENST00000347617 ERBINQ96RT1 1412 aa21.73■■□□□ 1.07
HMGA1-202ENST00000347617 NUP155O75694 1391 aa21.73■■□□□ 1.07
HMGA1-202ENST00000347617 RIMBP3CA6NJZ7 1639 aa21.73■■□□□ 1.07
HMGA1-202ENST00000347617 RIMBP3BA6NNM3 1639 aa21.73■■□□□ 1.07
HMGA1-202ENST00000347617 RIMBP3Q9UFD9 1639 aa21.73■■□□□ 1.07
HMGA1-202ENST00000347617 RPRD2Q5VT52 1461 aaKnown RBP21.72■■□□□ 1.07
HMGA1-202ENST00000347617 CFAP74Q9C0B2 1584 aa21.71■■□□□ 1.07
HMGA1-202ENST00000347617 CD109Q6YHK3 1445 aa21.7■■□□□ 1.06
HMGA1-202ENST00000347617 CNTLNQ9NXG0 1405 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms