RNA–Protein interactions for RNA: ENST00000347613.8

CLCN3-201, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLCN3, Length 3,635 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-201ENST00000347613 TIMELESSQ9UNS1 1208 aa8.6□□□□□ -1.03
CLCN3-201ENST00000347613 HSPA5P11021 654 aaKnown RBP8.6□□□□□ -1.03
CLCN3-201ENST00000347613 ERCC6Q03468 1493 aa8.6□□□□□ -1.03
CLCN3-201ENST00000347613 KIF14Q15058 1648 aa8.6□□□□□ -1.03
CLCN3-201ENST00000347613 GRIN2AQ12879 1464 aa8.59□□□□□ -1.03
CLCN3-201ENST00000347613 DAPK1P53355 1430 aa8.59□□□□□ -1.04
CLCN3-201ENST00000347613 IFT140Q96RY7 1462 aa8.58□□□□□ -1.04
CLCN3-201ENST00000347613 TSHZ2Q9NRE2 1034 aa8.58□□□□□ -1.04
CLCN3-201ENST00000347613 KIAA0586Q9BVV6 1533 aa8.57□□□□□ -1.04
CLCN3-201ENST00000347613 RAPGEF6Q8TEU7 1601 aa8.57□□□□□ -1.04
CLCN3-201ENST00000347613 FBLN2P98095 1184 aa8.57□□□□□ -1.04
CLCN3-201ENST00000347613 FKBP8Q14318 412 aa8.56□□□□□ -1.04
CLCN3-201ENST00000347613 NCBP3Q53F19 620 aaKnown RBP8.56□□□□□ -1.04
CLCN3-201ENST00000347613 ANKRD30BQ9BXX2 1392 aa8.56□□□□□ -1.04
CLCN3-201ENST00000347613 DNMT1P26358 1616 aaKnown RBP8.56□□□□□ -1.04
CLCN3-201ENST00000347613 RTN4Q9NQC3 1192 aaKnown RBP8.56□□□□□ -1.04
CLCN3-201ENST00000347613 MIA2Q96PC5 1412 aa8.55□□□□□ -1.04
CLCN3-201ENST00000347613 PZPP20742 1482 aa8.54□□□□□ -1.04
CLCN3-201ENST00000347613 TEX14Q8IWB6 1497 aa8.54□□□□□ -1.04
CLCN3-201ENST00000347613 ANP32CO43423 234 aa8.54□□□□□ -1.04
CLCN3-201ENST00000347613 ZNF777Q9ULD5 760 aaPredicted RBP8.54□□□□□ -1.04
CLCN3-201ENST00000347613 GPATCH8Q9UKJ3 1502 aaKnown RBP8.53□□□□□ -1.04
CLCN3-201ENST00000347613 SENP3-EIF4A1A0A087X0R7 540 aa8.53□□□□□ -1.04
CLCN3-201ENST00000347613 IRX6P78412 446 aaPredicted RBP8.53□□□□□ -1.04
CLCN3-201ENST00000347613 CCER2I3L3R5 266 aa8.52□□□□□ -1.05
CLCN3-201ENST00000347613 CAMSAP2Q08AD1 1489 aa8.52□□□□□ -1.05
CLCN3-201ENST00000347613 AKNAQ7Z591 1439 aa8.52□□□□□ -1.05
CLCN3-201ENST00000347613 AEBP2Q6ZN18 517 aaPredicted RBP8.52□□□□□ -1.05
CLCN3-201ENST00000347613 CHMP7Q8WUX9 453 aaPredicted RBP8.52□□□□□ -1.05
CLCN3-201ENST00000347613 JPH4Q96JJ6 628 aa8.51□□□□□ -1.05
CLCN3-201ENST00000347613 BCORL1Q5H9F3 1711 aa8.51□□□□□ -1.05
CLCN3-201ENST00000347613 RPRD2Q5VT52 1461 aaKnown RBP8.51□□□□□ -1.05
CLCN3-201ENST00000347613 SPATA31E1Q6ZUB1 1445 aa8.51□□□□□ -1.05
CLCN3-201ENST00000347613 NCOA1Q15788 1441 aa8.51□□□□□ -1.05
CLCN3-201ENST00000347613 CNGB1Q14028 1251 aaPredicted RBP8.5□□□□□ -1.05
CLCN3-201ENST00000347613 SLC4A1APQ9BWU0 796 aaKnown RBP8.5□□□□□ -1.05
CLCN3-201ENST00000347613 CDC42BPAQ5VT25 1732 aa8.5□□□□□ -1.05
CLCN3-201ENST00000347613 ROCK1Q13464 1354 aa8.49□□□□□ -1.05
CLCN3-201ENST00000347613 SYNJ2O15056 1496 aa8.49□□□□□ -1.05
CLCN3-201ENST00000347613 TROQ12816 1431 aaPredicted RBP8.49□□□□□ -1.05
CLCN3-201ENST00000347613 CFDP1Q9UEE9 299 aaPredicted RBP8.49□□□□□ -1.05
CLCN3-201ENST00000347613 ATP10BO94823 1461 aa8.49□□□□□ -1.05
CLCN3-201ENST00000347613 CROCC2H7BZ55 1655 aa8.48□□□□□ -1.05
CLCN3-201ENST00000347613 KIF7Q2M1P5 1343 aa8.48□□□□□ -1.05
CLCN3-201ENST00000347613 CCDC7Q96M83 1385 aa8.48□□□□□ -1.05
CLCN3-201ENST00000347613 NUP160Q12769 1436 aa8.48□□□□□ -1.05
CLCN3-201ENST00000347613 EIF4G2P78344 907 aaKnown RBP eCLIP8.48□□□□□ -1.05
CLCN3-201ENST00000347613 HNRNPUQ00839 825 aaKnown RBP eCLIP8.47□□□□□ -1.05
CLCN3-201ENST00000347613 ABCC10Q5T3U5 1492 aa8.47□□□□□ -1.05
CLCN3-201ENST00000347613 MAGI1Q96QZ7 1491 aaPredicted RBP8.47□□□□□ -1.05
CLCN3-201ENST00000347613 ADCY10Q96PN6 1610 aa8.47□□□□□ -1.05
CLCN3-201ENST00000347613 HNRNPMP52272 730 aaKnown RBP eCLIP8.47□□□□□ -1.05
CLCN3-201ENST00000347613 ABCA8O94911 1581 aa8.47□□□□□ -1.05
CLCN3-201ENST00000347613 PKD2Q13563 968 aa8.46□□□□□ -1.05
CLCN3-201ENST00000347613 CNTLNQ9NXG0 1405 aa8.46□□□□□ -1.06
CLCN3-201ENST00000347613 PRKRIP1Q9H875 184 aaPredicted RBP8.46□□□□□ -1.06
CLCN3-201ENST00000347613 MBD5Q9P267 1494 aa8.46□□□□□ -1.06
CLCN3-201ENST00000347613 ERCC6L2Q5T890 1561 aa8.46□□□□□ -1.06
CLCN3-201ENST00000347613 ZNF326Q5BKZ1 582 aaKnown RBP8.46□□□□□ -1.06
CLCN3-201ENST00000347613 ADGBQ8N7X0 1667 aa8.45□□□□□ -1.06
CLCN3-201ENST00000347613 FAM9BQ8IZU0 186 aa8.44□□□□□ -1.06
CLCN3-201ENST00000347613 CDC42BPBQ9Y5S2 1711 aa8.43□□□□□ -1.06
CLCN3-201ENST00000347613 DHX29Q7Z478 1369 aaKnown RBP8.43□□□□□ -1.06
CLCN3-201ENST00000347613 ADGRL2O95490 1459 aa8.43□□□□□ -1.06
CLCN3-201ENST00000347613 POLR1AO95602 1720 aaPredicted RBP8.43□□□□□ -1.06
CLCN3-201ENST00000347613 ITSN2Q9NZM3 1697 aa8.43□□□□□ -1.06
CLCN3-201ENST00000347613 ANKRD50Q9ULJ7 1429 aa8.42□□□□□ -1.06
CLCN3-201ENST00000347613 KIAA1107Q9UPP5 1409 aa8.42□□□□□ -1.06
CLCN3-201ENST00000347613 KDM5CP41229 1560 aa8.41□□□□□ -1.06
CLCN3-201ENST00000347613 ERICH6Q7L0X2 663 aa8.41□□□□□ -1.06
CLCN3-201ENST00000347613 CDK11AQ9UQ88 783 aaPredicted RBP8.41□□□□□ -1.06
CLCN3-201ENST00000347613 SAMD9LQ8IVG5 1584 aa8.41□□□□□ -1.06
CLCN3-201ENST00000347613 POLR3GLQ9BT43 218 aa8.41□□□□□ -1.06
CLCN3-201ENST00000347613 KDM2AQ9Y2K7 1162 aa8.41□□□□□ -1.06
CLCN3-201ENST00000347613 C9orf84Q5VXU9 1444 aa8.4□□□□□ -1.06
CLCN3-201ENST00000347613 NUP155O75694 1391 aa8.4□□□□□ -1.07
CLCN3-201ENST00000347613 CHD1O14646 1710 aa8.4□□□□□ -1.07
CLCN3-201ENST00000347613 PLEKHD1A6NEE1 506 aa8.39□□□□□ -1.07
CLCN3-201ENST00000347613 MRS2Q9HD23 443 aa8.39□□□□□ -1.07
CLCN3-201ENST00000347613 USP47Q96K76 1375 aa8.39□□□□□ -1.07
CLCN3-201ENST00000347613 TTC37Q6PGP7 1564 aa8.39□□□□□ -1.07
CLCN3-201ENST00000347613 RBM19Q9Y4C8 960 aaKnown RBP8.39□□□□□ -1.07
CLCN3-201ENST00000347613 CARMIL2Q6F5E8 1435 aa8.38□□□□□ -1.07
CLCN3-201ENST00000347613 ANKRD30AQ9BXX3 1397 aa8.38□□□□□ -1.07
CLCN3-201ENST00000347613 MSH5O43196 834 aa8.37□□□□□ -1.07
CLCN3-201ENST00000347613 PLA2R1Q13018 1463 aa8.37□□□□□ -1.07
CLCN3-201ENST00000347613 ARHGEF12Q9NZN5 1544 aa8.37□□□□□ -1.07
CLCN3-201ENST00000347613 NBPF1Q3BBV0 1214 aa8.37□□□□□ -1.07
CLCN3-201ENST00000347613 ST20-MTHFSA0A0A6YYL1 179 aa8.37□□□□□ -1.07
CLCN3-201ENST00000347613 KIF15Q9NS87 1388 aa8.36□□□□□ -1.07
CLCN3-201ENST00000347613 DCAF11Q8TEB1 546 aa8.36□□□□□ -1.07
CLCN3-201ENST00000347613 PTPRGP23470 1445 aa8.36□□□□□ -1.07
CLCN3-201ENST00000347613 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.35□□□□□ -1.07
CLCN3-201ENST00000347613 SYCP2Q9BX26 1530 aa8.35□□□□□ -1.07
CLCN3-201ENST00000347613 RGL3Q3MIN7 710 aa8.34□□□□□ -1.07
CLCN3-201ENST00000347613 PREX2Q70Z35 1606 aa8.34□□□□□ -1.07
CLCN3-201ENST00000347613 UHRF1BP1Q6BDS2 1440 aa8.34□□□□□ -1.07
CLCN3-201ENST00000347613 B4GALNT3Q6L9W6 998 aa8.34□□□□□ -1.08
CLCN3-201ENST00000347613 KDM5DQ9BY66 1539 aa8.33□□□□□ -1.08
CLCN3-201ENST00000347613 FAM135AQ9P2D6 1515 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms