RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 PPP1R15AO75807 674 aaPredicted RBP20.72■□□□□ 0.91
NPHP3-201ENST00000337331 CFAP53Q96M91 514 aa20.72■□□□□ 0.91
NPHP3-201ENST00000337331 BICRAQ9NZM4 1560 aa20.72■□□□□ 0.91
NPHP3-201ENST00000337331 FOXD1Q16676 465 aa20.71■□□□□ 0.91
NPHP3-201ENST00000337331 FAM43AQ8N2R8 423 aa20.7■□□□□ 0.9
NPHP3-201ENST00000337331 EIF4G1Q04637 1599 aaKnown RBP20.67■□□□□ 0.9
NPHP3-201ENST00000337331 NUDCQ9Y266 331 aa20.67■□□□□ 0.9
NPHP3-201ENST00000337331 PLEKHG5O94827 1062 aa20.66■□□□□ 0.9
NPHP3-201ENST00000337331 SPRYD3Q8NCJ5 442 aa20.66■□□□□ 0.9
NPHP3-201ENST00000337331 GOLGA6L3A6NEY3 463 aa20.64■□□□□ 0.89
NPHP3-201ENST00000337331 FTSJ3Q8IY81 847 aaKnown RBP20.63■□□□□ 0.89
NPHP3-201ENST00000337331 ARHGAP35Q9NRY4 1499 aa20.63■□□□□ 0.89
NPHP3-201ENST00000337331 PKD2Q13563 968 aa20.61■□□□□ 0.89
NPHP3-201ENST00000337331 FRAT2O75474 233 aaPredicted RBP20.6■□□□□ 0.89
NPHP3-201ENST00000337331 EXOC6Q8TAG9 804 aa20.59■□□□□ 0.89
NPHP3-201ENST00000337331 TMF1P82094 1093 aa20.59■□□□□ 0.89
NPHP3-201ENST00000337331 MPHOSPH9Q99550 1183 aa20.58■□□□□ 0.88
NPHP3-201ENST00000337331 ZBED9Q6R2W3 1325 aa20.57■□□□□ 0.88
NPHP3-201ENST00000337331 UNC13AQ9UPW8 1703 aa20.56■□□□□ 0.88
NPHP3-201ENST00000337331 RCAN3Q9UKA8 241 aa20.55■□□□□ 0.88
NPHP3-201ENST00000337331 CDK11BP21127 795 aaKnown RBP20.55■□□□□ 0.88
NPHP3-201ENST00000337331 MAPK8IP3Q9UPT6 1336 aa20.55■□□□□ 0.88
NPHP3-201ENST00000337331 ERCC6Q03468 1493 aa20.54■□□□□ 0.88
NPHP3-201ENST00000337331 CADPSQ9ULU8 1353 aa20.53■□□□□ 0.88
NPHP3-201ENST00000337331 GOLGA6L22H0YM25 854 aa20.53■□□□□ 0.88
NPHP3-201ENST00000337331 C14orf37Q86TY3 774 aa20.53■□□□□ 0.88
NPHP3-201ENST00000337331 MSNP26038 577 aaKnown RBP20.52■□□□□ 0.88
NPHP3-201ENST00000337331 DNTTIP2Q5QJE6 756 aaKnown RBP20.52■□□□□ 0.88
NPHP3-201ENST00000337331 TDRD9Q8NDG6 1382 aaKnown RBP20.52■□□□□ 0.88
NPHP3-201ENST00000337331 RRP9O43818 475 aaKnown RBP20.52■□□□□ 0.87
NPHP3-201ENST00000337331 RAPGEF2Q9Y4G8 1499 aa20.52■□□□□ 0.87
NPHP3-201ENST00000337331 L3MBTL2Q969R5 705 aa20.51■□□□□ 0.87
NPHP3-201ENST00000337331 RUSC2Q8N2Y8 1516 aa20.51■□□□□ 0.87
NPHP3-201ENST00000337331 U2SURPO15042 1029 aaKnown RBP20.51■□□□□ 0.87
NPHP3-201ENST00000337331 NCAPD3P42695 1498 aa20.5■□□□□ 0.87
NPHP3-201ENST00000337331 ZBTB7CA1YPR0 619 aa20.5■□□□□ 0.87
NPHP3-201ENST00000337331 NCLP19338 710 aaKnown RBP20.49■□□□□ 0.87
NPHP3-201ENST00000337331 C11orf95C9JLR9 678 aaPredicted RBP20.48■□□□□ 0.87
NPHP3-201ENST00000337331 POGKQ9P215 609 aa20.48■□□□□ 0.87
NPHP3-201ENST00000337331 PRKRIP1Q9H875 184 aaPredicted RBP20.48■□□□□ 0.87
NPHP3-201ENST00000337331 MS4A1P11836 297 aa20.46■□□□□ 0.87
NPHP3-201ENST00000337331 FMN1Q68DA7 1419 aa20.46■□□□□ 0.87
NPHP3-201ENST00000337331 FAM13BQ9NYF5 915 aa20.46■□□□□ 0.87
NPHP3-201ENST00000337331 WASHC2AQ641Q2 1341 aa20.44■□□□□ 0.86
NPHP3-201ENST00000337331 BACH2Q9BYV9 841 aa20.43■□□□□ 0.86
NPHP3-201ENST00000337331 CCDC184Q52MB2 194 aa20.43■□□□□ 0.86
NPHP3-201ENST00000337331 PLIN1O60240 522 aa20.42■□□□□ 0.86
NPHP3-201ENST00000337331 NUP155O75694 1391 aa20.42■□□□□ 0.86
NPHP3-201ENST00000337331 FHOD3Q2V2M9 1422 aa20.41■□□□□ 0.86
NPHP3-201ENST00000337331 KTN1Q86UP2 1357 aaKnown RBP20.41■□□□□ 0.86
NPHP3-201ENST00000337331 PDS5BQ9NTI5 1447 aa20.41■□□□□ 0.86
NPHP3-201ENST00000337331 PTMAP06454 111 aaKnown RBP20.41■□□□□ 0.86
NPHP3-201ENST00000337331 AKNAQ7Z591 1439 aa20.39■□□□□ 0.85
NPHP3-201ENST00000337331 CC2D2AQ9P2K1 1620 aa20.39■□□□□ 0.85
NPHP3-201ENST00000337331 RRP1P56182 461 aaKnown RBP20.39■□□□□ 0.85
NPHP3-201ENST00000337331 MORC1Q86VD1 984 aa20.38■□□□□ 0.85
NPHP3-201ENST00000337331 SAFB2Q14151 953 aaKnown RBP eCLIP20.37■□□□□ 0.85
NPHP3-201ENST00000337331 RALBP1Q15311 655 aa20.36■□□□□ 0.85
NPHP3-201ENST00000337331 FAM161AQ3B820 660 aa20.36■□□□□ 0.85
NPHP3-201ENST00000337331 TPRNQ4KMQ1 711 aa20.35■□□□□ 0.85
NPHP3-201ENST00000337331 RBM10P98175 930 aaKnown RBP20.35■□□□□ 0.85
NPHP3-201ENST00000337331 CASC1Q6TDU7 716 aa20.35■□□□□ 0.85
NPHP3-201ENST00000337331 WASHC2CQ9Y4E1 1318 aa20.35■□□□□ 0.85
NPHP3-201ENST00000337331 ROCK2O75116 1388 aaKnown RBP20.34■□□□□ 0.85
NPHP3-201ENST00000337331 SRPK2P78362 688 aaKnown RBP20.33■□□□□ 0.84
NPHP3-201ENST00000337331 A0A0G2JS52 829 aa20.32■□□□□ 0.84
NPHP3-201ENST00000337331 DNAJC5BQ9UF47 199 aa20.32■□□□□ 0.84
NPHP3-201ENST00000337331 HSP90AB1P08238 724 aaKnown RBP20.31■□□□□ 0.84
NPHP3-201ENST00000337331 ANKRD30AQ9BXX3 1397 aa20.31■□□□□ 0.84
NPHP3-201ENST00000337331 CHMP4BQ9H444 224 aaKnown RBP20.3■□□□□ 0.84
NPHP3-201ENST00000337331 KANK1Q14678 1352 aa20.3■□□□□ 0.84
NPHP3-201ENST00000337331 GGT6Q6P531 493 aa20.3■□□□□ 0.84
NPHP3-201ENST00000337331 FANCD2Q9BXW9 1451 aa20.29■□□□□ 0.84
NPHP3-201ENST00000337331 CRBNQ96SW2 442 aa20.29■□□□□ 0.84
NPHP3-201ENST00000337331 NLRP13Q86W25 1043 aa20.28■□□□□ 0.84
NPHP3-201ENST00000337331 SKAP1Q86WV1 359 aa20.28■□□□□ 0.84
NPHP3-201ENST00000337331 PDE4CQ08493 712 aa20.26■□□□□ 0.83
NPHP3-201ENST00000337331 CARMIL2Q6F5E8 1435 aa20.25■□□□□ 0.83
NPHP3-201ENST00000337331 U2AF1L5P0DN76 240 aaPredicted RBP20.25■□□□□ 0.83
NPHP3-201ENST00000337331 HNRNPMP52272 730 aaKnown RBP eCLIP20.25■□□□□ 0.83
NPHP3-201ENST00000337331 U2AF1Q01081 240 aaKnown RBP eCLIP20.25■□□□□ 0.83
NPHP3-201ENST00000337331 STK26Q9P289 416 aa20.25■□□□□ 0.83
NPHP3-201ENST00000337331 SOX12O15370 315 aa20.24■□□□□ 0.83
NPHP3-201ENST00000337331 HSCBQ8IWL3 235 aa20.24■□□□□ 0.83
NPHP3-201ENST00000337331 ST20-MTHFSA0A0A6YYL1 179 aa20.23■□□□□ 0.83
NPHP3-201ENST00000337331 TPM2P07951 284 aa20.22■□□□□ 0.83
NPHP3-201ENST00000337331 LMOD2Q6P5Q4 547 aa20.22■□□□□ 0.83
NPHP3-201ENST00000337331 EFCAB2Q5VUJ9 269 aa20.22■□□□□ 0.83
NPHP3-201ENST00000337331 HMGXB3Q12766 1538 aa20.21■□□□□ 0.83
NPHP3-201ENST00000337331 NESP48681 1621 aa20.2■□□□□ 0.82
NPHP3-201ENST00000337331 GOLGA2Q08379 1002 aa20.2■□□□□ 0.82
NPHP3-201ENST00000337331 PLCB2Q00722 1185 aa20.2■□□□□ 0.82
NPHP3-201ENST00000337331 ESPNB1AK53 854 aa20.19■□□□□ 0.82
NPHP3-201ENST00000337331 R3HCC1Q9Y3T6 440 aaKnown RBP20.19■□□□□ 0.82
NPHP3-201ENST00000337331 RRAGDQ9NQL2 400 aaPredicted RBP20.18■□□□□ 0.82
NPHP3-201ENST00000337331 MRE11P49959 708 aa20.18■□□□□ 0.82
NPHP3-201ENST00000337331 PDE3BQ13370 1112 aa20.18■□□□□ 0.82
NPHP3-201ENST00000337331 MLECQ14165 292 aa20.18■□□□□ 0.82
NPHP3-201ENST00000337331 KIAA1211Q6ZU35 1233 aa20.18■□□□□ 0.82
NPHP3-201ENST00000337331 WDR97A6NE52 1622 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms