RNA–Protein interactions for RNA: ENST00000334490.5

C9orf47-201, Transcript of chromosome 9 open reading frame 47, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene C9orf47, Length 4,829 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf47-201ENST00000334490 WASHC2CQ9Y4E1 1318 aa19.77■□□□□ 0.76
C9orf47-201ENST00000334490 U2SURPO15042 1029 aaKnown RBP19.76■□□□□ 0.75
C9orf47-201ENST00000334490 LAS1LQ9Y4W2 734 aaKnown RBP19.75■□□□□ 0.75
C9orf47-201ENST00000334490 AQRO60306 1485 aaKnown RBP eCLIP19.72■□□□□ 0.75
C9orf47-201ENST00000334490 HSPA5P11021 654 aaKnown RBP19.71■□□□□ 0.74
C9orf47-201ENST00000334490 MORC1Q86VD1 984 aa19.68■□□□□ 0.74
C9orf47-201ENST00000334490 NUTM2DQ5VT03 806 aaPredicted RBP19.66■□□□□ 0.74
C9orf47-201ENST00000334490 EID1Q9Y6B2 187 aa19.65■□□□□ 0.74
C9orf47-201ENST00000334490 ROCK2O75116 1388 aaKnown RBP19.64■□□□□ 0.73
C9orf47-201ENST00000334490 HDGFL2Q7Z4V5 671 aaPredicted RBP19.64■□□□□ 0.73
C9orf47-201ENST00000334490 FTSJ3Q8IY81 847 aaKnown RBP19.62■□□□□ 0.73
C9orf47-201ENST00000334490 NESP48681 1621 aa19.62■□□□□ 0.73
C9orf47-201ENST00000334490 PAK3O75914 559 aaPredicted RBP19.62■□□□□ 0.73
C9orf47-201ENST00000334490 L3MBTL2Q969R5 705 aa19.62■□□□□ 0.73
C9orf47-201ENST00000334490 PNNQ9H307 717 aaKnown RBP19.61■□□□□ 0.73
C9orf47-201ENST00000334490 FAM69CQ0P6D2 419 aa19.59■□□□□ 0.73
C9orf47-201ENST00000334490 CFTRP13569 1480 aa19.58■□□□□ 0.72
C9orf47-201ENST00000334490 FRAT1Q92837 279 aaPredicted RBP19.57■□□□□ 0.72
C9orf47-201ENST00000334490 SUPT16HQ9Y5B9 1047 aaKnown RBP19.57■□□□□ 0.72
C9orf47-201ENST00000334490 CC2D2AQ9P2K1 1620 aa19.56■□□□□ 0.72
C9orf47-201ENST00000334490 GRIN2BQ13224 1484 aa19.53■□□□□ 0.72
C9orf47-201ENST00000334490 NPHP1O15259 732 aa19.51■□□□□ 0.71
C9orf47-201ENST00000334490 EIF3AQ14152 1382 aaKnown RBP19.49■□□□□ 0.71
C9orf47-201ENST00000334490 KTN1Q86UP2 1357 aaKnown RBP19.49■□□□□ 0.71
C9orf47-201ENST00000334490 TRAK1Q9UPV9 953 aa19.49■□□□□ 0.71
C9orf47-201ENST00000334490 NUTM2FA1L443 756 aa19.48■□□□□ 0.71
C9orf47-201ENST00000334490 MRC2Q9UBG0 1479 aa19.48■□□□□ 0.71
C9orf47-201ENST00000334490 CSB-PGBD3P0DP91 1061 aa19.48■□□□□ 0.71
C9orf47-201ENST00000334490 CCDC144AA2RUR9 1427 aa19.47■□□□□ 0.71
C9orf47-201ENST00000334490 NGDNQ8NEJ9 315 aaKnown RBP19.47■□□□□ 0.71
C9orf47-201ENST00000334490 RTF1Q92541 710 aaKnown RBP19.46■□□□□ 0.71
C9orf47-201ENST00000334490 TERF2IPQ9NYB0 399 aa19.46■□□□□ 0.71
C9orf47-201ENST00000334490 U2AF1L5P0DN76 240 aaPredicted RBP19.46■□□□□ 0.71
C9orf47-201ENST00000334490 U2AF1Q01081 240 aaKnown RBP eCLIP19.46■□□□□ 0.71
C9orf47-201ENST00000334490 ZNF644Q9H582 1327 aaPredicted RBP19.45■□□□□ 0.7
C9orf47-201ENST00000334490 VGFO15240 615 aaPredicted RBP19.43■□□□□ 0.7
C9orf47-201ENST00000334490 MS4A1P11836 297 aa19.42■□□□□ 0.7
C9orf47-201ENST00000334490 ANP32BQ92688 251 aaKnown RBP19.42■□□□□ 0.7
C9orf47-201ENST00000334490 DNAJC5BQ9UF47 199 aa19.42■□□□□ 0.7
C9orf47-201ENST00000334490 HMGXB3Q12766 1538 aa19.41■□□□□ 0.7
C9orf47-201ENST00000334490 CCER2I3L3R5 266 aa19.41■□□□□ 0.7
C9orf47-201ENST00000334490 CHMP4BQ9H444 224 aaKnown RBP19.41■□□□□ 0.7
C9orf47-201ENST00000334490 MYOM3Q5VTT5 1437 aa19.4■□□□□ 0.7
C9orf47-201ENST00000334490 IFT140Q96RY7 1462 aa19.4■□□□□ 0.7
C9orf47-201ENST00000334490 PRG4Q92954 1404 aaPredicted RBP19.4■□□□□ 0.7
C9orf47-201ENST00000334490 RALBP1Q15311 655 aa19.39■□□□□ 0.69
C9orf47-201ENST00000334490 TOPBP1Q92547 1522 aa19.38■□□□□ 0.69
C9orf47-201ENST00000334490 OS9Q13438 667 aaPredicted RBP19.38■□□□□ 0.69
C9orf47-201ENST00000334490 ST20-MTHFSA0A0A6YYL1 179 aa19.37■□□□□ 0.69
C9orf47-201ENST00000334490 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.35■□□□□ 0.69
C9orf47-201ENST00000334490 RGS3P49796 1198 aa19.35■□□□□ 0.69
C9orf47-201ENST00000334490 CCDC9Q9Y3X0 531 aaKnown RBP19.35■□□□□ 0.69
C9orf47-201ENST00000334490 UACAQ9BZF9 1416 aa19.35■□□□□ 0.69
C9orf47-201ENST00000334490 POLA1P09884 1462 aaPredicted RBP19.34■□□□□ 0.69
C9orf47-201ENST00000334490 AFAP1Q8N556 730 aa19.34■□□□□ 0.69
C9orf47-201ENST00000334490 KIF15Q9NS87 1388 aa19.34■□□□□ 0.69
C9orf47-201ENST00000334490 CASC1Q6TDU7 716 aa19.33■□□□□ 0.69
C9orf47-201ENST00000334490 PRDM2Q13029 1718 aa19.33■□□□□ 0.68
C9orf47-201ENST00000334490 DHX57Q6P158 1386 aaKnown RBP19.33■□□□□ 0.68
C9orf47-201ENST00000334490 SYNJ1O43426 1573 aa19.33■□□□□ 0.68
C9orf47-201ENST00000334490 FGD6Q6ZV73 1430 aa19.32■□□□□ 0.68
C9orf47-201ENST00000334490 AMPHP49418 695 aa19.31■□□□□ 0.68
C9orf47-201ENST00000334490 PPP4R2Q9NY27 417 aa19.3■□□□□ 0.68
C9orf47-201ENST00000334490 BECN1Q14457 450 aa19.3■□□□□ 0.68
C9orf47-201ENST00000334490 CASKIN1Q8WXD9 1431 aa19.29■□□□□ 0.68
C9orf47-201ENST00000334490 LTV1Q96GA3 475 aaPredicted RBP19.29■□□□□ 0.68
C9orf47-201ENST00000334490 SYNJ2O15056 1496 aa19.29■□□□□ 0.68
C9orf47-201ENST00000334490 CALD1Q05682 793 aaKnown RBP19.29■□□□□ 0.68
C9orf47-201ENST00000334490 PHLDB1Q86UU1 1377 aa19.29■□□□□ 0.68
C9orf47-201ENST00000334490 KIF21BO75037 1637 aa19.28■□□□□ 0.68
C9orf47-201ENST00000334490 ZNF330Q9Y3S2 320 aaPredicted RBP19.28■□□□□ 0.68
C9orf47-201ENST00000334490 MINK1Q8N4C8 1332 aaPredicted RBP19.28■□□□□ 0.68
C9orf47-201ENST00000334490 SNAPC4Q5SXM2 1469 aa19.26■□□□□ 0.67
C9orf47-201ENST00000334490 CUX1P39880 1505 aa19.26■□□□□ 0.67
C9orf47-201ENST00000334490 NLRP13Q86W25 1043 aa19.26■□□□□ 0.67
C9orf47-201ENST00000334490 NBR1Q14596 966 aa19.25■□□□□ 0.67
C9orf47-201ENST00000334490 LRRC9Q6ZRR7 1453 aa19.25■□□□□ 0.67
C9orf47-201ENST00000334490 GOLGA2Q08379 1002 aa19.25■□□□□ 0.67
C9orf47-201ENST00000334490 EVC2Q86UK5 1308 aa19.24■□□□□ 0.67
C9orf47-201ENST00000334490 PANK3Q9H999 370 aa19.24■□□□□ 0.67
C9orf47-201ENST00000334490 BICRAQ9NZM4 1560 aa19.24■□□□□ 0.67
C9orf47-201ENST00000334490 IPO8O15397 1037 aaKnown RBP19.23■□□□□ 0.67
C9orf47-201ENST00000334490 NCOA2Q15596 1464 aa19.23■□□□□ 0.67
C9orf47-201ENST00000334490 B4GALNT3Q6L9W6 998 aa19.23■□□□□ 0.67
C9orf47-201ENST00000334490 ANKRD50Q9ULJ7 1429 aa19.23■□□□□ 0.67
C9orf47-201ENST00000334490 DDRGK1Q96HY6 314 aa19.22■□□□□ 0.67
C9orf47-201ENST00000334490 EIF5BO60841 1220 aaKnown RBP19.22■□□□□ 0.67
C9orf47-201ENST00000334490 ERICH3Q5RHP9 1530 aa19.21■□□□□ 0.67
C9orf47-201ENST00000334490 ARHGAP5Q13017 1502 aa19.21■□□□□ 0.67
C9orf47-201ENST00000334490 ARAP1Q96P48 1450 aa19.2■□□□□ 0.66
C9orf47-201ENST00000334490 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.2■□□□□ 0.66
C9orf47-201ENST00000334490 CCDC146Q8IYE0 955 aa19.2■□□□□ 0.66
C9orf47-201ENST00000334490 FYCO1Q9BQS8 1478 aa19.2■□□□□ 0.66
C9orf47-201ENST00000334490 TOP2BQ02880 1626 aa19.19■□□□□ 0.66
C9orf47-201ENST00000334490 COG3Q96JB2 828 aa19.18■□□□□ 0.66
C9orf47-201ENST00000334490 DNMBPQ6XZF7 1577 aa19.18■□□□□ 0.66
C9orf47-201ENST00000334490 KCNJ4P48050 445 aa19.18■□□□□ 0.66
C9orf47-201ENST00000334490 USP47Q96K76 1375 aa19.18■□□□□ 0.66
C9orf47-201ENST00000334490 PRXQ9BXM0 1461 aa19.17■□□□□ 0.66
C9orf47-201ENST00000334490 STK31Q9BXU1 1019 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms