RNA–Protein interactions for RNA: ENST00000330949.2

SOX1-201, Transcript of SRY-box 1, humanhuman

APPRIS P1 BASIC

Gene SOX1, Length 2,842 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1-201ENST00000330949 NUDCQ9Y266 331 aa32.74■■■□□ 2.83
SOX1-201ENST00000330949 FMN1Q68DA7 1419 aa32.73■■■□□ 2.83
SOX1-201ENST00000330949 NCOA1Q15788 1441 aa32.73■■■□□ 2.83
SOX1-201ENST00000330949 CCDC7Q96M83 1385 aa32.73■■■□□ 2.83
SOX1-201ENST00000330949 AQRO60306 1485 aaKnown RBP eCLIP32.69■■■□□ 2.82
SOX1-201ENST00000330949 LAMC3Q9Y6N6 1575 aa32.69■■■□□ 2.82
SOX1-201ENST00000330949 PPM1GO15355 546 aaPredicted RBP32.69■■■□□ 2.82
SOX1-201ENST00000330949 NAIPQ13075 1403 aa32.66■■■□□ 2.82
SOX1-201ENST00000330949 LRRIQ1Q96JM4 1722 aa32.64■■■□□ 2.82
SOX1-201ENST00000330949 ABCA5Q8WWZ7 1642 aa32.63■■■□□ 2.81
SOX1-201ENST00000330949 PDS5BQ9NTI5 1447 aa32.62■■■□□ 2.81
SOX1-201ENST00000330949 LAS1LQ9Y4W2 734 aaKnown RBP32.62■■■□□ 2.81
SOX1-201ENST00000330949 NPM2Q86SE8 214 aaKnown RBP32.59■■■□□ 2.81
SOX1-201ENST00000330949 TCERG1O14776 1098 aaKnown RBP32.59■■■□□ 2.81
SOX1-201ENST00000330949 KIF21AQ7Z4S6 1674 aa32.58■■■□□ 2.81
SOX1-201ENST00000330949 SAMD9Q5K651 1589 aa32.54■■■□□ 2.8
SOX1-201ENST00000330949 GRIN2BQ13224 1484 aa32.54■■■□□ 2.8
SOX1-201ENST00000330949 POLR1AO95602 1720 aaPredicted RBP32.53■■■□□ 2.8
SOX1-201ENST00000330949 FOXD1Q16676 465 aa32.53■■■□□ 2.8
SOX1-201ENST00000330949 MAGI3Q5TCQ9 1506 aa32.5■■■□□ 2.79
SOX1-201ENST00000330949 MYOM3Q5VTT5 1437 aa32.49■■■□□ 2.79
SOX1-201ENST00000330949 HECW1Q76N89 1606 aa32.49■■■□□ 2.79
SOX1-201ENST00000330949 PDE4AP27815 886 aa32.48■■■□□ 2.79
SOX1-201ENST00000330949 GSE1Q14687 1217 aa32.47■■■□□ 2.79
SOX1-201ENST00000330949 MS4A1P11836 297 aa32.46■■■□□ 2.79
SOX1-201ENST00000330949 BRPF3Q9ULD4 1205 aa32.45■■■□□ 2.79
SOX1-201ENST00000330949 BACH2Q9BYV9 841 aa32.45■■■□□ 2.78
SOX1-201ENST00000330949 KIF7Q2M1P5 1343 aa32.44■■■□□ 2.78
SOX1-201ENST00000330949 TARBP1Q13395 1621 aaKnown RBP32.43■■■□□ 2.78
SOX1-201ENST00000330949 L3MBTL2Q969R5 705 aa32.4■■■□□ 2.78
SOX1-201ENST00000330949 EIF5BO60841 1220 aaKnown RBP32.39■■■□□ 2.78
SOX1-201ENST00000330949 DDRGK1Q96HY6 314 aa32.39■■■□□ 2.78
SOX1-201ENST00000330949 DENND4BO75064 1496 aaPredicted RBP32.38■■■□□ 2.77
SOX1-201ENST00000330949 SPATA31E1Q6ZUB1 1445 aa32.35■■■□□ 2.77
SOX1-201ENST00000330949 GCC2Q8IWJ2 1684 aa32.34■■■□□ 2.77
SOX1-201ENST00000330949 CDK13Q14004 1512 aaKnown RBP32.34■■■□□ 2.77
SOX1-201ENST00000330949 CNGB1Q14028 1251 aaPredicted RBP32.33■■■□□ 2.77
SOX1-201ENST00000330949 SUPT6HQ7KZ85 1726 aaKnown RBP32.33■■■□□ 2.77
SOX1-201ENST00000330949 UGGT2Q9NYU1 1516 aa32.3■■■□□ 2.76
SOX1-201ENST00000330949 RRP1P56182 461 aaKnown RBP32.3■■■□□ 2.76
SOX1-201ENST00000330949 EHBP1L1Q8N3D4 1523 aa32.29■■■□□ 2.76
SOX1-201ENST00000330949 DHX29Q7Z478 1369 aaKnown RBP32.29■■■□□ 2.76
SOX1-201ENST00000330949 RSPH6AQ9H0K4 717 aa32.27■■■□□ 2.76
SOX1-201ENST00000330949 ZNF608Q9ULD9 1512 aaPredicted RBP32.27■■■□□ 2.76
SOX1-201ENST00000330949 NFKBIBQ15653 356 aa32.25■■■□□ 2.75
SOX1-201ENST00000330949 EXOC6Q8TAG9 804 aa32.25■■■□□ 2.75
SOX1-201ENST00000330949 EPRSP07814 1512 aaKnown RBP32.24■■■□□ 2.75
SOX1-201ENST00000330949 KDM6BO15054 1643 aa32.24■■■□□ 2.75
SOX1-201ENST00000330949 MPHOSPH9Q99550 1183 aa32.24■■■□□ 2.75
SOX1-201ENST00000330949 PNISRQ8TF01 805 aaKnown RBP32.23■■■□□ 2.75
SOX1-201ENST00000330949 ZNF644Q9H582 1327 aaPredicted RBP32.23■■■□□ 2.75
SOX1-201ENST00000330949 NBPF8Q3BBV2 869 aa32.22■■■□□ 2.75
SOX1-201ENST00000330949 PBRM1Q86U86 1689 aa32.21■■■□□ 2.75
SOX1-201ENST00000330949 ARHGEF11O15085 1522 aa32.21■■■□□ 2.75
SOX1-201ENST00000330949 MIA2Q96PC5 1412 aa32.21■■■□□ 2.75
SOX1-201ENST00000330949 FRAT1Q92837 279 aaPredicted RBP32.21■■■□□ 2.75
SOX1-201ENST00000330949 IQGAP2Q13576 1575 aa32.21■■■□□ 2.75
SOX1-201ENST00000330949 RPRD2Q5VT52 1461 aaKnown RBP32.19■■■□□ 2.74
SOX1-201ENST00000330949 THOC2Q8NI27 1593 aaKnown RBP32.18■■■□□ 2.74
SOX1-201ENST00000330949 TEX14Q8IWB6 1497 aa32.17■■■□□ 2.74
SOX1-201ENST00000330949 TMC1Q8TDI8 760 aa32.16■■■□□ 2.74
SOX1-201ENST00000330949 FAM43AQ8N2R8 423 aa32.15■■■□□ 2.74
SOX1-201ENST00000330949 RCAN3Q9UKA8 241 aa32.14■■■□□ 2.74
SOX1-201ENST00000330949 ADAMTS12P58397 1594 aa32.14■■■□□ 2.74
SOX1-201ENST00000330949 DAXXQ9UER7 740 aaPredicted RBP32.11■■■□□ 2.73
SOX1-201ENST00000330949 MRC2Q9UBG0 1479 aa32.11■■■□□ 2.73
SOX1-201ENST00000330949 POLR3GLQ9BT43 218 aa32.11■■■□□ 2.73
SOX1-201ENST00000330949 TCOF1Q13428 1488 aaKnown RBP32.1■■■□□ 2.73
SOX1-201ENST00000330949 LRPPRCP42704 1394 aaKnown RBP32.1■■■□□ 2.73
SOX1-201ENST00000330949 ZNF777Q9ULD5 760 aaPredicted RBP32.09■■■□□ 2.73
SOX1-201ENST00000330949 ARID4BQ4LE39 1312 aaPredicted RBP32.09■■■□□ 2.73
SOX1-201ENST00000330949 ANKRD30BQ9BXX2 1392 aa32.09■■■□□ 2.73
SOX1-201ENST00000330949 ZNF326Q5BKZ1 582 aaKnown RBP32.08■■■□□ 2.73
SOX1-201ENST00000330949 SLC4A1APQ9BWU0 796 aaKnown RBP32.06■■■□□ 2.72
SOX1-201ENST00000330949 WDR62O43379 1518 aa32.06■■■□□ 2.72
SOX1-201ENST00000330949 FBLN2P98095 1184 aa32.06■■■□□ 2.72
SOX1-201ENST00000330949 SENP3-EIF4A1A0A087X0R7 540 aa32.05■■■□□ 2.72
SOX1-201ENST00000330949 ROCK2O75116 1388 aaKnown RBP32.01■■■□□ 2.72
SOX1-201ENST00000330949 PDE3BQ13370 1112 aa32■■■□□ 2.71
SOX1-201ENST00000330949 BRD4O60885 1362 aaPredicted RBP31.99■■■□□ 2.71
SOX1-201ENST00000330949 BCORL1Q5H9F3 1711 aa31.98■■■□□ 2.71
SOX1-201ENST00000330949 DISP1Q96F81 1524 aa31.98■■■□□ 2.71
SOX1-201ENST00000330949 KTN1Q86UP2 1357 aaKnown RBP31.96■■■□□ 2.71
SOX1-201ENST00000330949 USP47Q96K76 1375 aa31.95■■■□□ 2.71
SOX1-201ENST00000330949 KIF15Q9NS87 1388 aa31.94■■■□□ 2.7
SOX1-201ENST00000330949 NUP153P49790 1475 aaKnown RBP31.93■■■□□ 2.7
SOX1-201ENST00000330949 PKNOX2Q96KN3 472 aa31.93■■■□□ 2.7
SOX1-201ENST00000330949 SLC4A3P48751 1232 aa31.92■■■□□ 2.7
SOX1-201ENST00000330949 ABCC5O15440 1437 aa31.91■■■□□ 2.7
SOX1-201ENST00000330949 GLIPR1L2Q4G1C9 344 aa31.91■■■□□ 2.7
SOX1-201ENST00000330949 MYBBP1AQ9BQG0 1328 aaKnown RBP31.91■■■□□ 2.7
SOX1-201ENST00000330949 DAPK1P53355 1430 aa31.91■■■□□ 2.7
SOX1-201ENST00000330949 PRG4Q92954 1404 aaPredicted RBP31.91■■■□□ 2.7
SOX1-201ENST00000330949 IFT140Q96RY7 1462 aa31.89■■■□□ 2.7
SOX1-201ENST00000330949 KIAA0586Q9BVV6 1533 aa31.89■■■□□ 2.7
SOX1-201ENST00000330949 CHMP7Q8WUX9 453 aaPredicted RBP31.88■■■□□ 2.69
SOX1-201ENST00000330949 RALBP1Q15311 655 aa31.87■■■□□ 2.69
SOX1-201ENST00000330949 CFDP1Q9UEE9 299 aaPredicted RBP31.86■■■□□ 2.69
SOX1-201ENST00000330949 KIAA0556O60303 1618 aa31.86■■■□□ 2.69
SOX1-201ENST00000330949 FRAT2O75474 233 aaPredicted RBP31.86■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms