RNA–Protein interactions for RNA: ENST00000312481.11

COL6A5-202, Transcript of collagen type VI alpha 5 chain, humanhuman

TSL 1 (best)

Gene COL6A5, Length 9,226 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5-202ENST00000312481 KIF15Q9NS87 1388 aa11.32□□□□□ -0.6
COL6A5-202ENST00000312481 ZBED9Q6R2W3 1325 aa11.32□□□□□ -0.6
COL6A5-202ENST00000312481 RAB3GAP2Q9H2M9 1393 aa11.31□□□□□ -0.6
COL6A5-202ENST00000312481 CHAF1AQ13111 956 aaPredicted RBP11.31□□□□□ -0.6
COL6A5-202ENST00000312481 CADPSQ9ULU8 1353 aa11.31□□□□□ -0.6
COL6A5-202ENST00000312481 HDGFP51858 240 aaKnown RBP11.31□□□□□ -0.6
COL6A5-202ENST00000312481 FAM9BQ8IZU0 186 aa11.31□□□□□ -0.6
COL6A5-202ENST00000312481 CASKIN1Q8WXD9 1431 aa11.31□□□□□ -0.6
COL6A5-202ENST00000312481 NINLQ9Y2I6 1382 aa11.31□□□□□ -0.6
COL6A5-202ENST00000312481 WDR97A6NE52 1622 aa11.31□□□□□ -0.6
COL6A5-202ENST00000312481 FANCIQ9NVI1 1328 aa11.3□□□□□ -0.6
COL6A5-202ENST00000312481 SOGA1O94964 1423 aa11.3□□□□□ -0.6
COL6A5-202ENST00000312481 SUPT16HQ9Y5B9 1047 aaKnown RBP11.3□□□□□ -0.6
COL6A5-202ENST00000312481 CFAP43Q8NDM7 1665 aa11.3□□□□□ -0.6
COL6A5-202ENST00000312481 IPO8O15397 1037 aaKnown RBP11.3□□□□□ -0.6
COL6A5-202ENST00000312481 MYOM3Q5VTT5 1437 aa11.3□□□□□ -0.6
COL6A5-202ENST00000312481 MAPK8IP3Q9UPT6 1336 aa11.29□□□□□ -0.6
COL6A5-202ENST00000312481 SYAP1Q96A49 352 aaPredicted RBP11.29□□□□□ -0.6
COL6A5-202ENST00000312481 KAT6BQ8WYB5 2073 aa11.28□□□□□ -0.6
COL6A5-202ENST00000312481 DNMBPQ6XZF7 1577 aa11.28□□□□□ -0.6
COL6A5-202ENST00000312481 FTSJ3Q8IY81 847 aaKnown RBP11.27□□□□□ -0.6
COL6A5-202ENST00000312481 CNGB1Q14028 1251 aaPredicted RBP11.27□□□□□ -0.61
COL6A5-202ENST00000312481 GBP4Q96PP9 640 aa11.27□□□□□ -0.61
COL6A5-202ENST00000312481 MCCP23508 829 aa11.27□□□□□ -0.61
COL6A5-202ENST00000312481 LAMC3Q9Y6N6 1575 aa11.26□□□□□ -0.61
COL6A5-202ENST00000312481 ERCC6Q03468 1493 aa11.26□□□□□ -0.61
COL6A5-202ENST00000312481 PHF14O94880 888 aa11.26□□□□□ -0.61
COL6A5-202ENST00000312481 ISY1Q9ULR0 285 aaKnown RBP11.26□□□□□ -0.61
COL6A5-202ENST00000312481 LRRC9Q6ZRR7 1453 aa11.26□□□□□ -0.61
COL6A5-202ENST00000312481 ZRSR1Q15695 479 aaKnown RBP11.25□□□□□ -0.61
COL6A5-202ENST00000312481 CARD11Q9BXL7 1154 aa11.25□□□□□ -0.61
COL6A5-202ENST00000312481 EIF4G1Q04637 1599 aaKnown RBP11.25□□□□□ -0.61
COL6A5-202ENST00000312481 CSPP1Q1MSJ5 1256 aa11.25□□□□□ -0.61
COL6A5-202ENST00000312481 SYNJ1O43426 1573 aa11.24□□□□□ -0.61
COL6A5-202ENST00000312481 HTATSF1O43719 755 aaKnown RBP11.24□□□□□ -0.61
COL6A5-202ENST00000312481 NLRP13Q86W25 1043 aa11.24□□□□□ -0.61
COL6A5-202ENST00000312481 AKNAQ7Z591 1439 aa11.24□□□□□ -0.61
COL6A5-202ENST00000312481 PMFBP1Q8TBY8 1022 aa11.24□□□□□ -0.61
COL6A5-202ENST00000312481 ZNF777Q9ULD5 760 aaPredicted RBP11.24□□□□□ -0.61
COL6A5-202ENST00000312481 FGD5Q6ZNL6 1462 aa11.22□□□□□ -0.61
COL6A5-202ENST00000312481 HSCBQ8IWL3 235 aa11.22□□□□□ -0.61
COL6A5-202ENST00000312481 CFTRP13569 1480 aa11.22□□□□□ -0.61
COL6A5-202ENST00000312481 NESP48681 1621 aa11.22□□□□□ -0.61
COL6A5-202ENST00000312481 MTERF4Q7Z6M4 381 aaKnown RBP11.22□□□□□ -0.61
COL6A5-202ENST00000312481 SKOR2Q2VWA4 1001 aaPredicted RBP11.21□□□□□ -0.61
COL6A5-202ENST00000312481 CCDC34Q96HJ3 373 aa11.21□□□□□ -0.62
COL6A5-202ENST00000312481 DHX57Q6P158 1386 aaKnown RBP11.2□□□□□ -0.62
COL6A5-202ENST00000312481 RSPH6AQ9H0K4 717 aa11.2□□□□□ -0.62
COL6A5-202ENST00000312481 NPM2Q86SE8 214 aaKnown RBP11.2□□□□□ -0.62
COL6A5-202ENST00000312481 FGD6Q6ZV73 1430 aa11.2□□□□□ -0.62
COL6A5-202ENST00000312481 STAG3Q9UJ98 1225 aa11.2□□□□□ -0.62
COL6A5-202ENST00000312481 FBLN2P98095 1184 aa11.19□□□□□ -0.62
COL6A5-202ENST00000312481 PPP1R15AO75807 674 aaPredicted RBP11.19□□□□□ -0.62
COL6A5-202ENST00000312481 ANO8Q9HCE9 1232 aaPredicted RBP11.19□□□□□ -0.62
COL6A5-202ENST00000312481 LMOD3Q0VAK6 560 aa11.19□□□□□ -0.62
COL6A5-202ENST00000312481 DDX11L8A8MPP1 907 aa11.19□□□□□ -0.62
COL6A5-202ENST00000312481 PDIA4P13667 645 aaKnown RBP11.18□□□□□ -0.62
COL6A5-202ENST00000312481 ROCK1Q13464 1354 aa11.18□□□□□ -0.62
COL6A5-202ENST00000312481 FANCD2Q9BXW9 1451 aa11.18□□□□□ -0.62
COL6A5-202ENST00000312481 EIF2AK4Q9P2K8 1649 aaKnown RBP11.18□□□□□ -0.62
COL6A5-202ENST00000312481 POLR1AO95602 1720 aaPredicted RBP11.18□□□□□ -0.62
COL6A5-202ENST00000312481 ADGBQ8N7X0 1667 aa11.18□□□□□ -0.62
COL6A5-202ENST00000312481 CCDC144AA2RUR9 1427 aa11.18□□□□□ -0.62
COL6A5-202ENST00000312481 HFM1A2PYH4 1435 aa11.18□□□□□ -0.62
COL6A5-202ENST00000312481 PRXQ9BXM0 1461 aa11.18□□□□□ -0.62
COL6A5-202ENST00000312481 RWDD1Q9H446 243 aaPredicted RBP11.17□□□□□ -0.62
COL6A5-202ENST00000312481 CGNL1Q0VF96 1302 aa11.17□□□□□ -0.62
COL6A5-202ENST00000312481 DHX8Q14562 1220 aaKnown RBP11.17□□□□□ -0.62
COL6A5-202ENST00000312481 P3H3Q8IVL6 736 aa11.17□□□□□ -0.62
COL6A5-202ENST00000312481 WWC1Q8IX03 1113 aa11.17□□□□□ -0.62
COL6A5-202ENST00000312481 IPO9Q96P70 1041 aaKnown RBP11.17□□□□□ -0.62
COL6A5-202ENST00000312481 CDK11BP21127 795 aaKnown RBP11.16□□□□□ -0.62
COL6A5-202ENST00000312481 GAPVD1Q14C86 1478 aa11.16□□□□□ -0.62
COL6A5-202ENST00000312481 MSNP26038 577 aaKnown RBP11.16□□□□□ -0.62
COL6A5-202ENST00000312481 MYBBP1AQ9BQG0 1328 aaKnown RBP11.16□□□□□ -0.62
COL6A5-202ENST00000312481 CENPQQ7L2Z9 268 aaPredicted RBP11.16□□□□□ -0.62
COL6A5-202ENST00000312481 BRD4O60885 1362 aaPredicted RBP11.14□□□□□ -0.63
COL6A5-202ENST00000312481 KIF3AQ9Y496 699 aa11.14□□□□□ -0.63
COL6A5-202ENST00000312481 DAPK1P53355 1430 aa11.13□□□□□ -0.63
COL6A5-202ENST00000312481 ATP6V1DQ9Y5K8 247 aa11.13□□□□□ -0.63
COL6A5-202ENST00000312481 CCDC141Q6ZP82 1450 aa11.13□□□□□ -0.63
COL6A5-202ENST00000312481 RCAN3Q9UKA8 241 aa11.13□□□□□ -0.63
COL6A5-202ENST00000312481 CCDC7Q96M83 1385 aa11.13□□□□□ -0.63
COL6A5-202ENST00000312481 RBM19Q9Y4C8 960 aaKnown RBP11.13□□□□□ -0.63
COL6A5-202ENST00000312481 MAP7D2Q96T17 732 aa11.13□□□□□ -0.63
COL6A5-202ENST00000312481 PTPN23Q9H3S7 1636 aa11.12□□□□□ -0.63
COL6A5-202ENST00000312481 IQGAP2Q13576 1575 aa11.11□□□□□ -0.63
COL6A5-202ENST00000312481 CT47B1P0C2W7 299 aaPredicted RBP11.11□□□□□ -0.63
COL6A5-202ENST00000312481 PLPPR3Q6T4P5 718 aa11.11□□□□□ -0.63
COL6A5-202ENST00000312481 KIAA2012Q0VF49 1180 aa11.11□□□□□ -0.63
COL6A5-202ENST00000312481 GCC2Q8IWJ2 1684 aa11.11□□□□□ -0.63
COL6A5-202ENST00000312481 PTMAP06454 111 aaKnown RBP11.11□□□□□ -0.63
COL6A5-202ENST00000312481 KIF14Q15058 1648 aa11.1□□□□□ -0.63
COL6A5-202ENST00000312481 KIF16BQ96L93 1317 aa11.1□□□□□ -0.63
COL6A5-202ENST00000312481 HMMRO75330 724 aa11.1□□□□□ -0.63
COL6A5-202ENST00000312481 RRP7BPQ9NSQ0 103 aa11.1□□□□□ -0.63
COL6A5-202ENST00000312481 NBR1Q14596 966 aa11.1□□□□□ -0.63
COL6A5-202ENST00000312481 HSP90AB1P08238 724 aaKnown RBP11.09□□□□□ -0.63
COL6A5-202ENST00000312481 MPHOSPH9Q99550 1183 aa11.09□□□□□ -0.63
COL6A5-202ENST00000312481 GRIN2BQ13224 1484 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms