RNA–Protein interactions for RNA: ENST00000296682.3

PRDM9-201, Transcript of PR/SET domain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRDM9, Length 3,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9-201ENST00000296682 ZNF326Q5BKZ1 582 aaKnown RBP13.3□□□□□ -0.28
PRDM9-201ENST00000296682 FOXD1Q16676 465 aa13.29□□□□□ -0.28
PRDM9-201ENST00000296682 ROCK1Q13464 1354 aa13.28□□□□□ -0.28
PRDM9-201ENST00000296682 CDC42BPAQ5VT25 1732 aa13.27□□□□□ -0.29
PRDM9-201ENST00000296682 ADGRL2O95490 1459 aa13.26□□□□□ -0.29
PRDM9-201ENST00000296682 KDM6BO15054 1643 aa13.26□□□□□ -0.29
PRDM9-201ENST00000296682 CDK13Q14004 1512 aaKnown RBP13.24□□□□□ -0.29
PRDM9-201ENST00000296682 TONSLQ96HA7 1378 aa13.23□□□□□ -0.29
PRDM9-201ENST00000296682 KCNH8Q96L42 1107 aa13.23□□□□□ -0.29
PRDM9-201ENST00000296682 KDM5DQ9BY66 1539 aa13.22□□□□□ -0.29
PRDM9-201ENST00000296682 ABCC10Q5T3U5 1492 aa13.2□□□□□ -0.3
PRDM9-201ENST00000296682 ARHGEF5Q12774 1597 aa13.2□□□□□ -0.3
PRDM9-201ENST00000296682 SHANK2Q9UPX8 1470 aa13.2□□□□□ -0.3
PRDM9-201ENST00000296682 CDK11AQ9UQ88 783 aaPredicted RBP13.2□□□□□ -0.3
PRDM9-201ENST00000296682 ZNF644Q9H582 1327 aaPredicted RBP13.19□□□□□ -0.3
PRDM9-201ENST00000296682 CHD1O14646 1710 aa13.19□□□□□ -0.3
PRDM9-201ENST00000296682 BCANQ96GW7 911 aa13.18□□□□□ -0.3
PRDM9-201ENST00000296682 KIF14Q15058 1648 aa13.18□□□□□ -0.3
PRDM9-201ENST00000296682 MYT1LQ9UL68 1186 aa13.18□□□□□ -0.3
PRDM9-201ENST00000296682 MAST1Q9Y2H9 1570 aa13.17□□□□□ -0.3
PRDM9-201ENST00000296682 TROQ12816 1431 aaPredicted RBP13.16□□□□□ -0.3
PRDM9-201ENST00000296682 CFDP1Q9UEE9 299 aaPredicted RBP13.16□□□□□ -0.3
PRDM9-201ENST00000296682 PREX2Q70Z35 1606 aa13.16□□□□□ -0.3
PRDM9-201ENST00000296682 DAPK1P53355 1430 aa13.16□□□□□ -0.3
PRDM9-201ENST00000296682 PELP1Q8IZL8 1130 aaKnown RBP13.15□□□□□ -0.3
PRDM9-201ENST00000296682 CDC42BPBQ9Y5S2 1711 aa13.14□□□□□ -0.31
PRDM9-201ENST00000296682 SLC4A1APQ9BWU0 796 aaKnown RBP13.14□□□□□ -0.31
PRDM9-201ENST00000296682 JPH4Q96JJ6 628 aa13.14□□□□□ -0.31
PRDM9-201ENST00000296682 ABCC5O15440 1437 aa13.13□□□□□ -0.31
PRDM9-201ENST00000296682 SENP3-EIF4A1A0A087X0R7 540 aa13.13□□□□□ -0.31
PRDM9-201ENST00000296682 CLASP1Q7Z460 1538 aa13.13□□□□□ -0.31
PRDM9-201ENST00000296682 GPATCH8Q9UKJ3 1502 aaKnown RBP13.13□□□□□ -0.31
PRDM9-201ENST00000296682 ANP32CO43423 234 aa13.12□□□□□ -0.31
PRDM9-201ENST00000296682 MBD5Q9P267 1494 aa13.12□□□□□ -0.31
PRDM9-201ENST00000296682 PLEKHD1A6NEE1 506 aa13.11□□□□□ -0.31
PRDM9-201ENST00000296682 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.11□□□□□ -0.31
PRDM9-201ENST00000296682 PPP1R15AO75807 674 aaPredicted RBP13.1□□□□□ -0.31
PRDM9-201ENST00000296682 CAMSAP2Q08AD1 1489 aa13.1□□□□□ -0.31
PRDM9-201ENST00000296682 KDM2AQ9Y2K7 1162 aa13.1□□□□□ -0.31
PRDM9-201ENST00000296682 TEX14Q8IWB6 1497 aa13.09□□□□□ -0.31
PRDM9-201ENST00000296682 PLXNC1O60486 1568 aa13.07□□□□□ -0.32
PRDM9-201ENST00000296682 RPRD2Q5VT52 1461 aaKnown RBP13.07□□□□□ -0.32
PRDM9-201ENST00000296682 PTPRGP23470 1445 aa13.07□□□□□ -0.32
PRDM9-201ENST00000296682 PZPP20742 1482 aa13.07□□□□□ -0.32
PRDM9-201ENST00000296682 MPHOSPH9Q99550 1183 aa13.07□□□□□ -0.32
PRDM9-201ENST00000296682 UNC13BO14795 1591 aa13.07□□□□□ -0.32
PRDM9-201ENST00000296682 PLB1Q6P1J6 1458 aa13.06□□□□□ -0.32
PRDM9-201ENST00000296682 ATP10BO94823 1461 aa13.06□□□□□ -0.32
PRDM9-201ENST00000296682 CARMIL2Q6F5E8 1435 aa13.06□□□□□ -0.32
PRDM9-201ENST00000296682 UHRF1BP1LA0JNW5 1464 aa13.05□□□□□ -0.32
PRDM9-201ENST00000296682 ARAP3Q8WWN8 1544 aa13.04□□□□□ -0.32
PRDM9-201ENST00000296682 TSPY4P0CV99 314 aa13.03□□□□□ -0.32
PRDM9-201ENST00000296682 TSPY10P0CW01 314 aa13.03□□□□□ -0.32
PRDM9-201ENST00000296682 SAMD9LQ8IVG5 1584 aa13.03□□□□□ -0.32
PRDM9-201ENST00000296682 NCOA1Q15788 1441 aa13.03□□□□□ -0.32
PRDM9-201ENST00000296682 HNRNPMP52272 730 aaKnown RBP eCLIP13.02□□□□□ -0.32
PRDM9-201ENST00000296682 MAGI2Q86UL8 1455 aa13.02□□□□□ -0.32
PRDM9-201ENST00000296682 L3MBTL2Q969R5 705 aa13.02□□□□□ -0.33
PRDM9-201ENST00000296682 ANKRD30BQ9BXX2 1392 aa13.02□□□□□ -0.33
PRDM9-201ENST00000296682 MYO5CQ9NQX4 1742 aa13.02□□□□□ -0.33
PRDM9-201ENST00000296682 RGL3Q3MIN7 710 aa13.01□□□□□ -0.33
PRDM9-201ENST00000296682 LAMC1P11047 1609 aa13.01□□□□□ -0.33
PRDM9-201ENST00000296682 SPATA31E1Q6ZUB1 1445 aa13□□□□□ -0.33
PRDM9-201ENST00000296682 ABCC2Q92887 1545 aa12.99□□□□□ -0.33
PRDM9-201ENST00000296682 ARHGEF12Q9NZN5 1544 aa12.99□□□□□ -0.33
PRDM9-201ENST00000296682 PRG4Q92954 1404 aaPredicted RBP12.99□□□□□ -0.33
PRDM9-201ENST00000296682 HSPA5P11021 654 aaKnown RBP12.99□□□□□ -0.33
PRDM9-201ENST00000296682 FAM9BQ8IZU0 186 aa12.99□□□□□ -0.33
PRDM9-201ENST00000296682 EIF4G2P78344 907 aaKnown RBP eCLIP12.98□□□□□ -0.33
PRDM9-201ENST00000296682 IQGAP3Q86VI3 1631 aa12.98□□□□□ -0.33
PRDM9-201ENST00000296682 NEFLP07196 543 aa12.98□□□□□ -0.33
PRDM9-201ENST00000296682 UHRF1BP1Q6BDS2 1440 aa12.97□□□□□ -0.33
PRDM9-201ENST00000296682 PKD2Q13563 968 aa12.97□□□□□ -0.33
PRDM9-201ENST00000296682 HNRNPUQ00839 825 aaKnown RBP eCLIP12.97□□□□□ -0.33
PRDM9-201ENST00000296682 E9PCH4 1651 aa12.96□□□□□ -0.33
PRDM9-201ENST00000296682 TTC37Q6PGP7 1564 aa12.96□□□□□ -0.33
PRDM9-201ENST00000296682 FKBP8Q14318 412 aa12.96□□□□□ -0.34
PRDM9-201ENST00000296682 DEPDC5O75140 1603 aa12.96□□□□□ -0.34
PRDM9-201ENST00000296682 IRX6P78412 446 aaPredicted RBP12.95□□□□□ -0.34
PRDM9-201ENST00000296682 NEURL4Q96JN8 1562 aa12.95□□□□□ -0.34
PRDM9-201ENST00000296682 ZCCHC11Q5TAX3 1644 aaKnown RBP12.95□□□□□ -0.34
PRDM9-201ENST00000296682 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.95□□□□□ -0.34
PRDM9-201ENST00000296682 SENP3Q9H4L4 574 aaPredicted RBP12.95□□□□□ -0.34
PRDM9-201ENST00000296682 KDM5CP41229 1560 aa12.94□□□□□ -0.34
PRDM9-201ENST00000296682 ATP10AO60312 1499 aa12.93□□□□□ -0.34
PRDM9-201ENST00000296682 KIAA1107Q9UPP5 1409 aa12.92□□□□□ -0.34
PRDM9-201ENST00000296682 ABCA9Q8IUA7 1624 aa12.9□□□□□ -0.34
PRDM9-201ENST00000296682 BCORL1Q5H9F3 1711 aa12.9□□□□□ -0.34
PRDM9-201ENST00000296682 SALL2Q9Y467 1007 aaPredicted RBP12.89□□□□□ -0.35
PRDM9-201ENST00000296682 ERCC6L2Q5T890 1561 aa12.89□□□□□ -0.35
PRDM9-201ENST00000296682 CCER2I3L3R5 266 aa12.89□□□□□ -0.35
PRDM9-201ENST00000296682 DCAF11Q8TEB1 546 aa12.88□□□□□ -0.35
PRDM9-201ENST00000296682 TRPM1Q7Z4N2 1603 aa12.88□□□□□ -0.35
PRDM9-201ENST00000296682 NUP155O75694 1391 aa12.88□□□□□ -0.35
PRDM9-201ENST00000296682 RNF17Q9BXT8 1623 aaKnown RBP12.87□□□□□ -0.35
PRDM9-201ENST00000296682 CCDC141Q6ZP82 1450 aa12.87□□□□□ -0.35
PRDM9-201ENST00000296682 MRS2Q9HD23 443 aa12.87□□□□□ -0.35
PRDM9-201ENST00000296682 ABCC1P33527 1531 aa12.87□□□□□ -0.35
PRDM9-201ENST00000296682 VWDEQ8N2E2 1590 aa12.87□□□□□ -0.35
PRDM9-201ENST00000296682 PLEKHH2Q8IVE3 1493 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms