RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 PTPRKQ15262 1439 aa14.15□□□□□ -0.14
LIG3-201ENST00000262327 RRP7BPQ9NSQ0 103 aa14.15□□□□□ -0.14
LIG3-201ENST00000262327 NCOA2Q15596 1464 aa14.15□□□□□ -0.14
LIG3-201ENST00000262327 UHRF1BP1LA0JNW5 1464 aa14.14□□□□□ -0.15
LIG3-201ENST00000262327 ATP10BO94823 1461 aa14.14□□□□□ -0.15
LIG3-201ENST00000262327 ABCC2Q92887 1545 aa14.13□□□□□ -0.15
LIG3-201ENST00000262327 FGD6Q6ZV73 1430 aa14.13□□□□□ -0.15
LIG3-201ENST00000262327 NEFLP07196 543 aa14.13□□□□□ -0.15
LIG3-201ENST00000262327 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.12□□□□□ -0.15
LIG3-201ENST00000262327 TROQ12816 1431 aaPredicted RBP14.12□□□□□ -0.15
LIG3-201ENST00000262327 IRX6P78412 446 aaPredicted RBP14.11□□□□□ -0.15
LIG3-201ENST00000262327 MYOM3Q5VTT5 1437 aa14.1□□□□□ -0.15
LIG3-201ENST00000262327 TIMELESSQ9UNS1 1208 aa14.1□□□□□ -0.15
LIG3-201ENST00000262327 ADCY10Q96PN6 1610 aa14.09□□□□□ -0.15
LIG3-201ENST00000262327 PLEKHD1A6NEE1 506 aa14.08□□□□□ -0.16
LIG3-201ENST00000262327 FOXD1Q16676 465 aa14.08□□□□□ -0.16
LIG3-201ENST00000262327 CCER2I3L3R5 266 aa14.07□□□□□ -0.16
LIG3-201ENST00000262327 MIA2Q96PC5 1412 aa14.06□□□□□ -0.16
LIG3-201ENST00000262327 HNRNPUQ00839 825 aaKnown RBP eCLIP14.06□□□□□ -0.16
LIG3-201ENST00000262327 KDM5BQ9UGL1 1544 aa14.06□□□□□ -0.16
LIG3-201ENST00000262327 TCOF1Q13428 1488 aaKnown RBP14.03□□□□□ -0.16
LIG3-201ENST00000262327 CNGB1Q14028 1251 aaPredicted RBP14.03□□□□□ -0.16
LIG3-201ENST00000262327 NAIPQ13075 1403 aa14.03□□□□□ -0.16
LIG3-201ENST00000262327 KIF14Q15058 1648 aa14.02□□□□□ -0.16
LIG3-201ENST00000262327 HSPA5P11021 654 aaKnown RBP14.02□□□□□ -0.16
LIG3-201ENST00000262327 HFM1A2PYH4 1435 aa14.02□□□□□ -0.17
LIG3-201ENST00000262327 RBM19Q9Y4C8 960 aaKnown RBP14.01□□□□□ -0.17
LIG3-201ENST00000262327 ZCCHC11Q5TAX3 1644 aaKnown RBP14.01□□□□□ -0.17
LIG3-201ENST00000262327 PTPN23Q9H3S7 1636 aa14.01□□□□□ -0.17
LIG3-201ENST00000262327 ABCC10Q5T3U5 1492 aa14□□□□□ -0.17
LIG3-201ENST00000262327 CCDC184Q52MB2 194 aa14□□□□□ -0.17
LIG3-201ENST00000262327 ITSN2Q9NZM3 1697 aa13.99□□□□□ -0.17
LIG3-201ENST00000262327 WASHC2AQ641Q2 1341 aa13.99□□□□□ -0.17
LIG3-201ENST00000262327 GPATCH8Q9UKJ3 1502 aaKnown RBP13.98□□□□□ -0.17
LIG3-201ENST00000262327 C11orf95C9JLR9 678 aaPredicted RBP13.95□□□□□ -0.18
LIG3-201ENST00000262327 FAM9BQ8IZU0 186 aa13.95□□□□□ -0.18
LIG3-201ENST00000262327 L3MBTL2Q969R5 705 aa13.95□□□□□ -0.18
LIG3-201ENST00000262327 SENP3-EIF4A1A0A087X0R7 540 aa13.94□□□□□ -0.18
LIG3-201ENST00000262327 MPHOSPH9Q99550 1183 aa13.94□□□□□ -0.18
LIG3-201ENST00000262327 CFDP1Q9UEE9 299 aaPredicted RBP13.94□□□□□ -0.18
LIG3-201ENST00000262327 EIF4G2P78344 907 aaKnown RBP eCLIP13.93□□□□□ -0.18
LIG3-201ENST00000262327 CDC42BPAQ5VT25 1732 aa13.93□□□□□ -0.18
LIG3-201ENST00000262327 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.92□□□□□ -0.18
LIG3-201ENST00000262327 WDR7Q9Y4E6 1490 aa13.91□□□□□ -0.18
LIG3-201ENST00000262327 NPM1P06748 294 aaKnown RBP eCLIP13.91□□□□□ -0.18
LIG3-201ENST00000262327 RIMBP3CA6NJZ7 1639 aa13.91□□□□□ -0.18
LIG3-201ENST00000262327 RIMBP3BA6NNM3 1639 aa13.91□□□□□ -0.18
LIG3-201ENST00000262327 RIMBP3Q9UFD9 1639 aa13.91□□□□□ -0.18
LIG3-201ENST00000262327 POLR3GLQ9BT43 218 aa13.91□□□□□ -0.18
LIG3-201ENST00000262327 ZNF644Q9H582 1327 aaPredicted RBP13.9□□□□□ -0.18
LIG3-201ENST00000262327 KDM6BO15054 1643 aa13.9□□□□□ -0.18
LIG3-201ENST00000262327 PREX2Q70Z35 1606 aa13.9□□□□□ -0.18
LIG3-201ENST00000262327 DENND4BO75064 1496 aaPredicted RBP13.9□□□□□ -0.18
LIG3-201ENST00000262327 CAMSAP2Q08AD1 1489 aa13.9□□□□□ -0.18
LIG3-201ENST00000262327 DNMT1P26358 1616 aaKnown RBP13.89□□□□□ -0.19
LIG3-201ENST00000262327 TTC37Q6PGP7 1564 aa13.88□□□□□ -0.19
LIG3-201ENST00000262327 NBPF8Q3BBV2 869 aa13.88□□□□□ -0.19
LIG3-201ENST00000262327 AKNAQ7Z591 1439 aa13.88□□□□□ -0.19
LIG3-201ENST00000262327 ASXL2Q76L83 1435 aa13.88□□□□□ -0.19
LIG3-201ENST00000262327 DAPK1P53355 1430 aa13.87□□□□□ -0.19
LIG3-201ENST00000262327 ZNF326Q5BKZ1 582 aaKnown RBP13.87□□□□□ -0.19
LIG3-201ENST00000262327 MRS2Q9HD23 443 aa13.87□□□□□ -0.19
LIG3-201ENST00000262327 MYO5CQ9NQX4 1742 aa13.86□□□□□ -0.19
LIG3-201ENST00000262327 ABCC5O15440 1437 aa13.86□□□□□ -0.19
LIG3-201ENST00000262327 MSH5O43196 834 aa13.86□□□□□ -0.19
LIG3-201ENST00000262327 PLCH2O75038 1416 aa13.86□□□□□ -0.19
LIG3-201ENST00000262327 ARAP3Q8WWN8 1544 aa13.86□□□□□ -0.19
LIG3-201ENST00000262327 CDC42BPBQ9Y5S2 1711 aa13.86□□□□□ -0.19
LIG3-201ENST00000262327 ROCK1Q13464 1354 aa13.85□□□□□ -0.19
LIG3-201ENST00000262327 SLC4A1APQ9BWU0 796 aaKnown RBP13.84□□□□□ -0.19
LIG3-201ENST00000262327 PRKRIP1Q9H875 184 aaPredicted RBP13.84□□□□□ -0.19
LIG3-201ENST00000262327 ABCA9Q8IUA7 1624 aa13.84□□□□□ -0.19
LIG3-201ENST00000262327 PLEKHH2Q8IVE3 1493 aa13.83□□□□□ -0.19
LIG3-201ENST00000262327 ZNF777Q9ULD5 760 aaPredicted RBP13.83□□□□□ -0.2
LIG3-201ENST00000262327 ARHGAP5Q13017 1502 aa13.83□□□□□ -0.2
LIG3-201ENST00000262327 ARHGEF5Q12774 1597 aa13.83□□□□□ -0.2
LIG3-201ENST00000262327 RSPH4AQ5TD94 716 aa13.83□□□□□ -0.2
LIG3-201ENST00000262327 B4GALNT3Q6L9W6 998 aa13.82□□□□□ -0.2
LIG3-201ENST00000262327 CYB5RLQ6IPT4 315 aa13.82□□□□□ -0.2
LIG3-201ENST00000262327 SAMD9LQ8IVG5 1584 aa13.82□□□□□ -0.2
LIG3-201ENST00000262327 SHANK2Q9UPX8 1470 aa13.82□□□□□ -0.2
LIG3-201ENST00000262327 KIAA1107Q9UPP5 1409 aa13.82□□□□□ -0.2
LIG3-201ENST00000262327 CROCC2H7BZ55 1655 aa13.81□□□□□ -0.2
LIG3-201ENST00000262327 EFCAB2Q5VUJ9 269 aa13.81□□□□□ -0.2
LIG3-201ENST00000262327 CCDC7Q96M83 1385 aa13.81□□□□□ -0.2
LIG3-201ENST00000262327 GCC2Q8IWJ2 1684 aa13.8□□□□□ -0.2
LIG3-201ENST00000262327 CNTLNQ9NXG0 1405 aa13.8□□□□□ -0.2
LIG3-201ENST00000262327 ADGRL2O95490 1459 aa13.8□□□□□ -0.2
LIG3-201ENST00000262327 MBD5Q9P267 1494 aa13.8□□□□□ -0.2
LIG3-201ENST00000262327 KIF7Q2M1P5 1343 aa13.79□□□□□ -0.2
LIG3-201ENST00000262327 ADGBQ8N7X0 1667 aa13.78□□□□□ -0.2
LIG3-201ENST00000262327 CCDC141Q6ZP82 1450 aa13.77□□□□□ -0.2
LIG3-201ENST00000262327 ANKRD30BQ9BXX2 1392 aa13.76□□□□□ -0.21
LIG3-201ENST00000262327 TSPY4P0CV99 314 aa13.76□□□□□ -0.21
LIG3-201ENST00000262327 TSPY10P0CW01 314 aa13.76□□□□□ -0.21
LIG3-201ENST00000262327 ANKRD30AQ9BXX3 1397 aa13.76□□□□□ -0.21
LIG3-201ENST00000262327 NCOA1Q15788 1441 aa13.76□□□□□ -0.21
LIG3-201ENST00000262327 HNRNPMP52272 730 aaKnown RBP eCLIP13.75□□□□□ -0.21
LIG3-201ENST00000262327 C9orf84Q5VXU9 1444 aa13.75□□□□□ -0.21
LIG3-201ENST00000262327 SYCP2Q9BX26 1530 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms