RNA–Protein interactions for RNA: ENST00000248594.10

PTPN12-201, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN12, Length 3,406 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-201ENST00000248594 KIF27Q86VH2 1401 aa24.21■■□□□ 1.47
PTPN12-201ENST00000248594 CNTLNQ9NXG0 1405 aa24.14■■□□□ 1.46
PTPN12-201ENST00000248594 FAM43AQ8N2R8 423 aa24.14■■□□□ 1.46
PTPN12-201ENST00000248594 FHOD3Q2V2M9 1422 aa24.13■■□□□ 1.45
PTPN12-201ENST00000248594 PRXQ9BXM0 1461 aa24.13■■□□□ 1.45
PTPN12-201ENST00000248594 RGS3P49796 1198 aa24.13■■□□□ 1.45
PTPN12-201ENST00000248594 HSP90AA2PQ14568 343 aaPredicted RBP24.13■■□□□ 1.45
PTPN12-201ENST00000248594 DNMBPQ6XZF7 1577 aa24.12■■□□□ 1.45
PTPN12-201ENST00000248594 RRP1P56182 461 aaKnown RBP24.12■■□□□ 1.45
PTPN12-201ENST00000248594 L3MBTL2Q969R5 705 aa24.11■■□□□ 1.45
PTPN12-201ENST00000248594 RRAGDQ9NQL2 400 aaPredicted RBP24.11■■□□□ 1.45
PTPN12-201ENST00000248594 RCAN3Q9UKA8 241 aa24.09■■□□□ 1.45
PTPN12-201ENST00000248594 URB2Q14146 1524 aaKnown RBP24.09■■□□□ 1.45
PTPN12-201ENST00000248594 TOPBP1Q92547 1522 aa24.09■■□□□ 1.45
PTPN12-201ENST00000248594 SMG6Q86US8 1419 aaKnown RBP24.09■■□□□ 1.45
PTPN12-201ENST00000248594 POGKQ9P215 609 aa24.09■■□□□ 1.45
PTPN12-201ENST00000248594 SLKQ9H2G2 1235 aaPredicted RBP24.08■■□□□ 1.45
PTPN12-201ENST00000248594 CARMIL1Q5VZK9 1371 aa24.07■■□□□ 1.44
PTPN12-201ENST00000248594 CCDC7Q96M83 1385 aa24.07■■□□□ 1.44
PTPN12-201ENST00000248594 GZF1Q9H116 711 aaPredicted RBP24.06■■□□□ 1.44
PTPN12-201ENST00000248594 A0A0U1RQG5 324 aaPredicted RBP24.04■■□□□ 1.44
PTPN12-201ENST00000248594 HSP90AA1P07900 732 aaKnown RBP24.04■■□□□ 1.44
PTPN12-201ENST00000248594 ERCC6Q03468 1493 aa24.04■■□□□ 1.44
PTPN12-201ENST00000248594 PNNQ9H307 717 aaKnown RBP24.04■■□□□ 1.44
PTPN12-201ENST00000248594 KIF7Q2M1P5 1343 aa24.04■■□□□ 1.44
PTPN12-201ENST00000248594 FGD5Q6ZNL6 1462 aa24.03■■□□□ 1.44
PTPN12-201ENST00000248594 FHAD1B1AJZ9 1412 aa24.03■■□□□ 1.44
PTPN12-201ENST00000248594 IGF1RP08069 1367 aa24.02■■□□□ 1.44
PTPN12-201ENST00000248594 MRC2Q9UBG0 1479 aa24.01■■□□□ 1.43
PTPN12-201ENST00000248594 CRBNQ96SW2 442 aa24■■□□□ 1.43
PTPN12-201ENST00000248594 SPRYD3Q8NCJ5 442 aa23.98■■□□□ 1.43
PTPN12-201ENST00000248594 CDCA7LQ96GN5 454 aa23.98■■□□□ 1.43
PTPN12-201ENST00000248594 MTUS2Q5JR59 1369 aa23.97■■□□□ 1.43
PTPN12-201ENST00000248594 CCDC18Q5T9S5 1454 aa23.97■■□□□ 1.43
PTPN12-201ENST00000248594 MS4A1P11836 297 aa23.97■■□□□ 1.43
PTPN12-201ENST00000248594 POLA1P09884 1462 aaPredicted RBP23.96■■□□□ 1.43
PTPN12-201ENST00000248594 NBPF8Q3BBV2 869 aa23.94■■□□□ 1.42
PTPN12-201ENST00000248594 LRRC9Q6ZRR7 1453 aa23.93■■□□□ 1.42
PTPN12-201ENST00000248594 ARID3AQ99856 593 aa23.92■■□□□ 1.42
PTPN12-201ENST00000248594 RNF123Q5XPI4 1314 aa23.91■■□□□ 1.42
PTPN12-201ENST00000248594 WDR62O43379 1518 aa23.9■■□□□ 1.42
PTPN12-201ENST00000248594 THOC2Q8NI27 1593 aaKnown RBP23.9■■□□□ 1.42
PTPN12-201ENST00000248594 AQRO60306 1485 aaKnown RBP eCLIP23.88■■□□□ 1.414e-7■■■□□ 15.7
PTPN12-201ENST00000248594 RAD54L2Q9Y4B4 1467 aa23.88■■□□□ 1.41
PTPN12-201ENST00000248594 PNISRQ8TF01 805 aaKnown RBP23.88■■□□□ 1.41
PTPN12-201ENST00000248594 C20orf194Q5TEA3 1177 aa23.85■■□□□ 1.41
PTPN12-201ENST00000248594 PANK2Q9BZ23 570 aa23.84■■□□□ 1.41
PTPN12-201ENST00000248594 UACAQ9BZF9 1416 aa23.82■■□□□ 1.4
PTPN12-201ENST00000248594 ZNF777Q9ULD5 760 aaPredicted RBP23.82■■□□□ 1.4
PTPN12-201ENST00000248594 TIAM1Q13009 1591 aa23.81■■□□□ 1.4
PTPN12-201ENST00000248594 ABCA10Q8WWZ4 1543 aa23.81■■□□□ 1.4
PTPN12-201ENST00000248594 ERICH3Q5RHP9 1530 aa23.8■■□□□ 1.4
PTPN12-201ENST00000248594 PTPRKQ15262 1439 aa23.8■■□□□ 1.4
PTPN12-201ENST00000248594 MPHOSPH9Q99550 1183 aa23.79■■□□□ 1.4
PTPN12-201ENST00000248594 FAM161AQ3B820 660 aa23.79■■□□□ 1.4
PTPN12-201ENST00000248594 TARBP1Q13395 1621 aaKnown RBP23.77■■□□□ 1.4
PTPN12-201ENST00000248594 L1TD1Q5T7N2 865 aaKnown RBP23.77■■□□□ 1.4
PTPN12-201ENST00000248594 NCOA1Q15788 1441 aa23.77■■□□□ 1.39
PTPN12-201ENST00000248594 TDRD9Q8NDG6 1382 aaKnown RBP23.76■■□□□ 1.39
PTPN12-201ENST00000248594 KDM2AQ9Y2K7 1162 aa23.76■■□□□ 1.39
PTPN12-201ENST00000248594 GOLGA6L3A6NEY3 463 aa23.73■■□□□ 1.39
PTPN12-201ENST00000248594 RRP9O43818 475 aaKnown RBP23.72■■□□□ 1.39
PTPN12-201ENST00000248594 NCOA2Q15596 1464 aa23.72■■□□□ 1.39
PTPN12-201ENST00000248594 SLC4A1APQ9BWU0 796 aaKnown RBP23.7■■□□□ 1.38
PTPN12-201ENST00000248594 FMN1Q68DA7 1419 aa23.69■■□□□ 1.38
PTPN12-201ENST00000248594 XRCC6P12956 609 aaKnown RBP eCLIP23.69■■□□□ 1.384e-8■□□□□ 11.3
PTPN12-201ENST00000248594 ZNF644Q9H582 1327 aaPredicted RBP23.68■■□□□ 1.38
PTPN12-201ENST00000248594 C8orf34Q49A92 452 aa23.68■■□□□ 1.38
PTPN12-201ENST00000248594 IFT140Q96RY7 1462 aa23.67■■□□□ 1.38
PTPN12-201ENST00000248594 PCF11O94913 1555 aaKnown RBP23.67■■□□□ 1.38
PTPN12-201ENST00000248594 CC2D1BQ5T0F9 858 aaKnown RBP23.66■■□□□ 1.38
PTPN12-201ENST00000248594 ABCA5Q8WWZ7 1642 aa23.66■■□□□ 1.38
PTPN12-201ENST00000248594 RBM10P98175 930 aaKnown RBP23.65■■□□□ 1.38
PTPN12-201ENST00000248594 FGD6Q6ZV73 1430 aa23.65■■□□□ 1.38
PTPN12-201ENST00000248594 MAP3K1Q13233 1512 aa23.63■■□□□ 1.37
PTPN12-201ENST00000248594 NAIPQ13075 1403 aa23.63■■□□□ 1.37
PTPN12-201ENST00000248594 TRIM44Q96DX7 344 aaPredicted RBP23.63■■□□□ 1.37
PTPN12-201ENST00000248594 BECN1Q14457 450 aa23.62■■□□□ 1.37
PTPN12-201ENST00000248594 GAPVD1Q14C86 1478 aa23.61■■□□□ 1.37
PTPN12-201ENST00000248594 HFM1A2PYH4 1435 aa23.59■■□□□ 1.37
PTPN12-201ENST00000248594 KTN1Q86UP2 1357 aaKnown RBP23.59■■□□□ 1.37
PTPN12-201ENST00000248594 SEC24BO95487 1268 aa23.58■■□□□ 1.37
PTPN12-201ENST00000248594 DHX29Q7Z478 1369 aaKnown RBP23.58■■□□□ 1.37
PTPN12-201ENST00000248594 CENPQQ7L2Z9 268 aaPredicted RBP23.58■■□□□ 1.37
PTPN12-201ENST00000248594 ZNF608Q9ULD9 1512 aaPredicted RBP23.57■■□□□ 1.36
PTPN12-201ENST00000248594 MYH16Q9H6N6 1097 aa23.57■■□□□ 1.36
PTPN12-201ENST00000248594 CARD11Q9BXL7 1154 aa23.56■■□□□ 1.36
PTPN12-201ENST00000248594 CLCN1P35523 988 aa23.56■■□□□ 1.36
PTPN12-201ENST00000248594 KDM5BQ9UGL1 1544 aa23.55■■□□□ 1.36
PTPN12-201ENST00000248594 USP47Q96K76 1375 aa23.54■■□□□ 1.36
PTPN12-201ENST00000248594 PBRM1Q86U86 1689 aa23.54■■□□□ 1.36
PTPN12-201ENST00000248594 ZBTB7CA1YPR0 619 aa23.54■■□□□ 1.36
PTPN12-201ENST00000248594 MYBBP1AQ9BQG0 1328 aaKnown RBP23.52■■□□□ 1.36
PTPN12-201ENST00000248594 FAM13BQ9NYF5 915 aa23.51■■□□□ 1.35
PTPN12-201ENST00000248594 ESPNB1AK53 854 aa23.51■■□□□ 1.35
PTPN12-201ENST00000248594 FBLN2P98095 1184 aa23.51■■□□□ 1.35
PTPN12-201ENST00000248594 CUL7Q14999 1698 aa23.51■■□□□ 1.35
PTPN12-201ENST00000248594 ST20-MTHFSA0A0A6YYL1 179 aa23.5■■□□□ 1.35
PTPN12-201ENST00000248594 EIF4G3O43432 1585 aaKnown RBP23.5■■□□□ 1.35
PTPN12-201ENST00000248594 CANXP27824 592 aaKnown RBP23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 125.1 ms