RNA–Protein interactions for RNA: ENST00000003912.7

NIPAL3-201, Transcript of NIPA like domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene NIPAL3, Length 5,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-201ENST00000003912 U2SURPO15042 1029 aaKnown RBP13.58□□□□□ -0.24
NIPAL3-201ENST00000003912 FOXD1Q16676 465 aa13.58□□□□□ -0.24
NIPAL3-201ENST00000003912 GRIN2BQ13224 1484 aa13.57□□□□□ -0.24
NIPAL3-201ENST00000003912 NEUROD2Q15784 382 aa13.57□□□□□ -0.24
NIPAL3-201ENST00000003912 LAS1LQ9Y4W2 734 aaKnown RBP13.56□□□□□ -0.24
NIPAL3-201ENST00000003912 RAB3GAP2Q9H2M9 1393 aa13.56□□□□□ -0.24
NIPAL3-201ENST00000003912 CFTRP13569 1480 aa13.56□□□□□ -0.24
NIPAL3-201ENST00000003912 MORC1Q86VD1 984 aa13.56□□□□□ -0.24
NIPAL3-201ENST00000003912 FAM69CQ0P6D2 419 aa13.55□□□□□ -0.24
NIPAL3-201ENST00000003912 RUSC2Q8N2Y8 1516 aa13.55□□□□□ -0.24
NIPAL3-201ENST00000003912 EIF3AQ14152 1382 aaKnown RBP13.55□□□□□ -0.24
NIPAL3-201ENST00000003912 SOX12O15370 315 aa13.55□□□□□ -0.24
NIPAL3-201ENST00000003912 ROCK2O75116 1388 aaKnown RBP13.55□□□□□ -0.24
NIPAL3-201ENST00000003912 HMGXB3Q12766 1538 aa13.54□□□□□ -0.24
NIPAL3-201ENST00000003912 IFT140Q96RY7 1462 aa13.53□□□□□ -0.24
NIPAL3-201ENST00000003912 NPHP1O15259 732 aa13.53□□□□□ -0.24
NIPAL3-201ENST00000003912 PAK3O75914 559 aaPredicted RBP13.52□□□□□ -0.24
NIPAL3-201ENST00000003912 FTSJ3Q8IY81 847 aaKnown RBP13.52□□□□□ -0.24
NIPAL3-201ENST00000003912 NESP48681 1621 aa13.51□□□□□ -0.25
NIPAL3-201ENST00000003912 HSPA5P11021 654 aaKnown RBP13.5□□□□□ -0.25
NIPAL3-201ENST00000003912 CHMP4BQ9H444 224 aaKnown RBP13.49□□□□□ -0.25
NIPAL3-201ENST00000003912 CSB-PGBD3P0DP91 1061 aa13.47□□□□□ -0.25
NIPAL3-201ENST00000003912 UACAQ9BZF9 1416 aa13.47□□□□□ -0.25
NIPAL3-201ENST00000003912 TERF2IPQ9NYB0 399 aa13.46□□□□□ -0.25
NIPAL3-201ENST00000003912 MS4A1P11836 297 aa13.46□□□□□ -0.25
NIPAL3-201ENST00000003912 RTF1Q92541 710 aaKnown RBP13.46□□□□□ -0.25
NIPAL3-201ENST00000003912 NUTM2DQ5VT03 806 aaPredicted RBP13.46□□□□□ -0.26
NIPAL3-201ENST00000003912 KTN1Q86UP2 1357 aaKnown RBP13.45□□□□□ -0.26
NIPAL3-201ENST00000003912 CCDC144AA2RUR9 1427 aa13.45□□□□□ -0.26
NIPAL3-201ENST00000003912 IRX6P78412 446 aaPredicted RBP13.44□□□□□ -0.26
NIPAL3-201ENST00000003912 VGFO15240 615 aaPredicted RBP13.44□□□□□ -0.26
NIPAL3-201ENST00000003912 NGDNQ8NEJ9 315 aaKnown RBP13.44□□□□□ -0.26
NIPAL3-201ENST00000003912 SENP3-EIF4A1A0A087X0R7 540 aa13.44□□□□□ -0.26
NIPAL3-201ENST00000003912 PRG4Q92954 1404 aaPredicted RBP13.43□□□□□ -0.26
NIPAL3-201ENST00000003912 MYOM3Q5VTT5 1437 aa13.42□□□□□ -0.26
NIPAL3-201ENST00000003912 TOPBP1Q92547 1522 aa13.42□□□□□ -0.26
NIPAL3-201ENST00000003912 ANP32BQ92688 251 aaKnown RBP13.42□□□□□ -0.26
NIPAL3-201ENST00000003912 EIF5BO60841 1220 aaKnown RBP13.42□□□□□ -0.26
NIPAL3-201ENST00000003912 L3MBTL2Q969R5 705 aa13.41□□□□□ -0.26
NIPAL3-201ENST00000003912 CASC1Q6TDU7 716 aa13.4□□□□□ -0.26
NIPAL3-201ENST00000003912 FRAT1Q92837 279 aaPredicted RBP13.4□□□□□ -0.26
NIPAL3-201ENST00000003912 AEBP2Q6ZN18 517 aaPredicted RBP13.4□□□□□ -0.26
NIPAL3-201ENST00000003912 SYNJ2O15056 1496 aa13.4□□□□□ -0.26
NIPAL3-201ENST00000003912 PRDM2Q13029 1718 aa13.39□□□□□ -0.27
NIPAL3-201ENST00000003912 CCDC9Q9Y3X0 531 aaKnown RBP13.39□□□□□ -0.27
NIPAL3-201ENST00000003912 CALD1Q05682 793 aaKnown RBP13.39□□□□□ -0.27
NIPAL3-201ENST00000003912 CUX1P39880 1505 aa13.38□□□□□ -0.27
NIPAL3-201ENST00000003912 RALBP1Q15311 655 aa13.38□□□□□ -0.27
NIPAL3-201ENST00000003912 OS9Q13438 667 aaPredicted RBP13.38□□□□□ -0.27
NIPAL3-201ENST00000003912 TRAK1Q9UPV9 953 aa13.37□□□□□ -0.27
NIPAL3-201ENST00000003912 POLA1P09884 1462 aaPredicted RBP13.37□□□□□ -0.27
NIPAL3-201ENST00000003912 U2AF1L5P0DN76 240 aaPredicted RBP13.36□□□□□ -0.27
NIPAL3-201ENST00000003912 U2AF1Q01081 240 aaKnown RBP eCLIP13.36□□□□□ -0.27
NIPAL3-201ENST00000003912 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.36□□□□□ -0.27
NIPAL3-201ENST00000003912 CHMP4AQ9BY43 222 aa13.36□□□□□ -0.27
NIPAL3-201ENST00000003912 SNAPC4Q5SXM2 1469 aa13.36□□□□□ -0.27
NIPAL3-201ENST00000003912 CASKIN1Q8WXD9 1431 aa13.35□□□□□ -0.27
NIPAL3-201ENST00000003912 DNMBPQ6XZF7 1577 aa13.35□□□□□ -0.27
NIPAL3-201ENST00000003912 CCER2I3L3R5 266 aa13.34□□□□□ -0.27
NIPAL3-201ENST00000003912 LAMC3Q9Y6N6 1575 aa13.34□□□□□ -0.27
NIPAL3-201ENST00000003912 GOLGA2Q08379 1002 aa13.34□□□□□ -0.27
NIPAL3-201ENST00000003912 KIF15Q9NS87 1388 aa13.33□□□□□ -0.28
NIPAL3-201ENST00000003912 ERICH3Q5RHP9 1530 aa13.33□□□□□ -0.28
NIPAL3-201ENST00000003912 AMPHP49418 695 aa13.33□□□□□ -0.28
NIPAL3-201ENST00000003912 NUTM2FA1L443 756 aa13.33□□□□□ -0.28
NIPAL3-201ENST00000003912 SUPT16HQ9Y5B9 1047 aaKnown RBP13.32□□□□□ -0.28
NIPAL3-201ENST00000003912 ARHGAP5Q13017 1502 aa13.32□□□□□ -0.28
NIPAL3-201ENST00000003912 BICRAQ9NZM4 1560 aa13.32□□□□□ -0.28
NIPAL3-201ENST00000003912 SYNJ1O43426 1573 aa13.32□□□□□ -0.28
NIPAL3-201ENST00000003912 FGD6Q6ZV73 1430 aa13.31□□□□□ -0.28
NIPAL3-201ENST00000003912 BECN1Q14457 450 aa13.31□□□□□ -0.28
NIPAL3-201ENST00000003912 DNAJC5BQ9UF47 199 aa13.31□□□□□ -0.28
NIPAL3-201ENST00000003912 EVC2Q86UK5 1308 aa13.31□□□□□ -0.28
NIPAL3-201ENST00000003912 FYCO1Q9BQS8 1478 aa13.31□□□□□ -0.28
NIPAL3-201ENST00000003912 TOP2BQ02880 1626 aa13.3□□□□□ -0.28
NIPAL3-201ENST00000003912 ZNF644Q9H582 1327 aaPredicted RBP13.29□□□□□ -0.28
NIPAL3-201ENST00000003912 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.29□□□□□ -0.28
NIPAL3-201ENST00000003912 IPO8O15397 1037 aaKnown RBP13.29□□□□□ -0.28
NIPAL3-201ENST00000003912 STAC3Q96MF2 364 aa13.29□□□□□ -0.28
NIPAL3-201ENST00000003912 KIF21BO75037 1637 aa13.28□□□□□ -0.28
NIPAL3-201ENST00000003912 EFCAB5A4FU69 1503 aa13.28□□□□□ -0.28
NIPAL3-201ENST00000003912 LRRC9Q6ZRR7 1453 aa13.27□□□□□ -0.29
NIPAL3-201ENST00000003912 DDRGK1Q96HY6 314 aa13.27□□□□□ -0.29
NIPAL3-201ENST00000003912 NCOA2Q15596 1464 aa13.26□□□□□ -0.29
NIPAL3-201ENST00000003912 AFAP1Q8N556 730 aa13.26□□□□□ -0.29
NIPAL3-201ENST00000003912 LMOD3Q0VAK6 560 aa13.26□□□□□ -0.29
NIPAL3-201ENST00000003912 ZNF330Q9Y3S2 320 aaPredicted RBP13.26□□□□□ -0.29
NIPAL3-201ENST00000003912 ANKRD50Q9ULJ7 1429 aa13.25□□□□□ -0.29
NIPAL3-201ENST00000003912 COG3Q96JB2 828 aa13.25□□□□□ -0.29
NIPAL3-201ENST00000003912 ST20-MTHFSA0A0A6YYL1 179 aa13.25□□□□□ -0.29
NIPAL3-201ENST00000003912 PLEKHH2Q8IVE3 1493 aa13.25□□□□□ -0.29
NIPAL3-201ENST00000003912 NCLP19338 710 aaKnown RBP13.25□□□□□ -0.29
NIPAL3-201ENST00000003912 LTV1Q96GA3 475 aaPredicted RBP13.24□□□□□ -0.29
NIPAL3-201ENST00000003912 MINK1Q8N4C8 1332 aaPredicted RBP13.24□□□□□ -0.29
NIPAL3-201ENST00000003912 STK31Q9BXU1 1019 aa13.24□□□□□ -0.29
NIPAL3-201ENST00000003912 NLRP13Q86W25 1043 aa13.23□□□□□ -0.29
NIPAL3-201ENST00000003912 TMX4Q9H1E5 349 aaPredicted RBP13.23□□□□□ -0.29
NIPAL3-201ENST00000003912 PPP4R2Q9NY27 417 aa13.23□□□□□ -0.29
NIPAL3-201ENST00000003912 CGNL1Q0VF96 1302 aa13.23□□□□□ -0.29
NIPAL3-201ENST00000003912 KIAA0586Q9BVV6 1533 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms