RNA–Protein interactions for RNA: ENSMUST00000034713.8

Ldlr-201, Transcript of Low-density lipoprotein receptor, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ldlr, Length 4,627 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ldlr-201ENSMUST00000034713 Kdm2aP59997 1161 aa13.08□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Ofd1Q80Z25 1017 aa13.08□□□□□ -0.32
Ldlr-201ENSMUST00000034713 CadpsQ80TJ1 1355 aa13.07□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Mphosph9A6H5Y1 991 aa13.07□□□□□ -0.32
Ldlr-201ENSMUST00000034713 IqubQ8CDK3 788 aa13.07□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Thoc2B1AZI6 1594 aaKnown RBP13.07□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Stk24Q99KH8 431 aa13.07□□□□□ -0.32
Ldlr-201ENSMUST00000034713 SynmQ70IV5 1561 aa13.07□□□□□ -0.32
Ldlr-201ENSMUST00000034713 AqrQ8CFQ3 1481 aaKnown RBP13.07□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Gm20521D3Z5F7 333 aa13.06□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Hspa5P20029 655 aaKnown RBP13.06□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Card11Q8CIS0 1159 aa13.06□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Trak1Q6PD31 939 aa13.05□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Rsph4aQ8BYM7 716 aa13.05□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Arhgap31A6X8Z5 1425 aa13.04□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Polr3glQ8R0C0 218 aa13.04□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Nup155Q99P88 1391 aaKnown RBP13.04□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Naip1Q9QWK5 1403 aa13.04□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Gm14025A2AP89 1413 aa13.03□□□□□ -0.32
Ldlr-201ENSMUST00000034713 CanxP35564 591 aaKnown RBP13.03□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Kif3bQ61771 747 aa13.03□□□□□ -0.32
Ldlr-201ENSMUST00000034713 Rad21Q61550 635 aaKnown RBP13.02□□□□□ -0.33
Ldlr-201ENSMUST00000034713 Tdrd9Q14BI7 1383 aa13.02□□□□□ -0.33
Ldlr-201ENSMUST00000034713 Grin2aP35436 1464 aa13.02□□□□□ -0.33
Ldlr-201ENSMUST00000034713 MyclP10166 368 aa13.01□□□□□ -0.33
Ldlr-201ENSMUST00000034713 Arap1Q4LDD4 1452 aa13.01□□□□□ -0.33
Ldlr-201ENSMUST00000034713 TnnQ80Z71 1560 aa13□□□□□ -0.33
Ldlr-201ENSMUST00000034713 TchhA0A0B4J1F9 1599 aa13□□□□□ -0.33
Ldlr-201ENSMUST00000034713 Arhgef5E9Q7D5 1581 aa13□□□□□ -0.33
Ldlr-201ENSMUST00000034713 Htatsf1Q8BGC0 757 aa12.98□□□□□ -0.33
Ldlr-201ENSMUST00000034713 Ppm1gQ61074 542 aa12.98□□□□□ -0.33
Ldlr-201ENSMUST00000034713 Fam163aQ8CAA5 168 aa12.98□□□□□ -0.33
Ldlr-201ENSMUST00000034713 Mbd3Q9Z2D8 285 aaKnown RBP12.96□□□□□ -0.33
Ldlr-201ENSMUST00000034713 Ccdc141E9Q8Q6 1531 aa12.96□□□□□ -0.34
Ldlr-201ENSMUST00000034713 SafbD3YXK2 937 aaKnown RBP12.95□□□□□ -0.34
Ldlr-201ENSMUST00000034713 ArxO35085 564 aa12.95□□□□□ -0.34
Ldlr-201ENSMUST00000034713 Spag9Q58A65 1321 aaKnown RBP12.94□□□□□ -0.34
Ldlr-201ENSMUST00000034713 Tcerg1Q8CGF7 1100 aaKnown RBP12.94□□□□□ -0.34
Ldlr-201ENSMUST00000034713 Hsp90ab1P11499 724 aaKnown RBP12.93□□□□□ -0.34
Ldlr-201ENSMUST00000034713 Stag3O70576 1240 aa12.92□□□□□ -0.34
Ldlr-201ENSMUST00000034713 Fhad1A6PWD2 1420 aa12.92□□□□□ -0.34
Ldlr-201ENSMUST00000034713 Prdm16A2A935 1275 aa12.92□□□□□ -0.34
Ldlr-201ENSMUST00000034713 Exosc9Q9JHI7 438 aaKnown RBP12.92□□□□□ -0.34
Ldlr-201ENSMUST00000034713 Tiam1Q60610 1591 aa12.91□□□□□ -0.34
Ldlr-201ENSMUST00000034713 Trim30dE9PWL0 497 aa12.91□□□□□ -0.34
Ldlr-201ENSMUST00000034713 Ifit1bl1D3Z6F0 470 aa12.9□□□□□ -0.34
Ldlr-201ENSMUST00000034713 Neo1P97798 1493 aa12.9□□□□□ -0.34
Ldlr-201ENSMUST00000034713 Trim44Q9QXA7 346 aa12.9□□□□□ -0.34
Ldlr-201ENSMUST00000034713 Irx3P81067 507 aa12.89□□□□□ -0.35
Ldlr-201ENSMUST00000034713 Igf1rQ60751 1373 aa12.89□□□□□ -0.35
Ldlr-201ENSMUST00000034713 Rangap1P46061 589 aaKnown RBP12.89□□□□□ -0.35
Ldlr-201ENSMUST00000034713 Rundc1Q0VDN7 615 aa12.88□□□□□ -0.35
Ldlr-201ENSMUST00000034713 Arhgap5P97393 1501 aa12.87□□□□□ -0.35
Ldlr-201ENSMUST00000034713 Disp1Q3TDN0 1521 aa12.87□□□□□ -0.35
Ldlr-201ENSMUST00000034713 Sin3aQ60520 1274 aaKnown RBP12.87□□□□□ -0.35
Ldlr-201ENSMUST00000034713 Vps8Q0P5W1 1427 aa12.85□□□□□ -0.35
Ldlr-201ENSMUST00000034713 Supt16hQ920B9 1047 aa12.85□□□□□ -0.35
Ldlr-201ENSMUST00000034713 Gtf2e1Q9D0D5 440 aa12.84□□□□□ -0.35
Ldlr-201ENSMUST00000034713 Kif21aQ9QXL2 1672 aa12.84□□□□□ -0.35
Ldlr-201ENSMUST00000034713 Ythdc1E9Q5K9 736 aaKnown RBP12.83□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Mug1P28665 1476 aa12.83□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Magi1Q6RHR9 1471 aa12.83□□□□□ -0.36
Ldlr-201ENSMUST00000034713 MlecQ6ZQI3 291 aaKnown RBP12.83□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Pcf11G3X9Z4 1553 aa12.83□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Nsd2Q8BVE8 1365 aa12.82□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Usp47Q8BY87 1376 aa12.82□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Txndc2Q6P902 515 aa12.81□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Ankrd36D3Z4K0 1415 aa12.81□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Psme1P97371 249 aa12.81□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Arid4bA2CG63 1314 aaKnown RBP12.81□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Wwc2Q6NXJ0 1187 aa12.81□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Ipo9Q91YE6 1041 aa12.81□□□□□ -0.36
Ldlr-201ENSMUST00000034713 DekQ7TNV0 380 aaKnown RBP12.8□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Stard8Q8K031 1019 aa12.8□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Samd9lQ69Z37 1561 aa12.8□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Chmp4bQ9D8B3 224 aaKnown RBP12.8□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Il16O54824 1322 aa12.79□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Pla2r1Q62028 1487 aa12.78□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Ankrd26Q811D2 1581 aa12.78□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Pde4cQ3UEI1 686 aa12.78□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Map7O88735 730 aa12.77□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Rwdd1Q9CQK7 243 aa12.77□□□□□ -0.36
Ldlr-201ENSMUST00000034713 Stk26Q99JT2 416 aa12.77□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Srcin1Q9QWI6 1250 aa12.77□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Ncapd3Q6ZQK0 1506 aa12.76□□□□□ -0.37
Ldlr-201ENSMUST00000034713 NexmifQ5DTT1 1515 aa12.76□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Gpatch8A2A6A1 1505 aa12.76□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Map3k5O35099 1380 aa12.76□□□□□ -0.37
Ldlr-201ENSMUST00000034713 A2mQ6GQT1 1474 aa12.75□□□□□ -0.37
Ldlr-201ENSMUST00000034713 AU015836B2RUM3 263 aa12.75□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Rock2P70336 1388 aa12.75□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Exoc6Q8R313 802 aa12.75□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Zfp777B9EKF4 885 aa12.74□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Nup160Q9Z0W3 1402 aaKnown RBP12.74□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Fgd1P52734 960 aa12.74□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Zscan21Q07231 555 aa12.74□□□□□ -0.37
Ldlr-201ENSMUST00000034713 NgefQ8CHT1 710 aa12.73□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Cnga1P29974 684 aa12.73□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Mak16Q8BGS0 296 aaKnown RBP12.73□□□□□ -0.37
Ldlr-201ENSMUST00000034713 Mlh3A0A1Y7VMP7 1443 aa12.73□□□□□ -0.37
Retrieved 100 of 22,080 RNA–protein pairs in 14.2 ms