RNA–Protein interactions for RNA: YKL139W

CTK1, Transcript of Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), yeast

Gene CTK1, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK1	YKL139W	GAL4	P04386	881 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	HIP1	P06775	603 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	SPS4	P09937	338 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	URE2	P23202	354 aa	Known RBP	4.01	□□□□□ -1.77
CTK1	YKL139W	KRR1	P25586	316 aa	Predicted RBP	4.01	□□□□□ -1.77
CTK1	YKL139W	NIP100	P33420	868 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	LTV1	P34078	463 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	HEL1	P36113	551 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	KEL1	P38853	1164 aa	Known RBP	4.01	□□□□□ -1.77
CTK1	YKL139W	URB2	P47108	1174 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	COS5	P47187	383 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	FMS1	P50264	508 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	PKP2	P53170	491 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	DRN1	P53255	507 aa	Known RBP	4.01	□□□□□ -1.77
CTK1	YKL139W	SMM1	P53720	384 aa	Known RBP	4.01	□□□□□ -1.77
CTK1	YKL139W	HEF3	P53978	1044 aa	Known RBP	4.01	□□□□□ -1.77
CTK1	YKL139W	SLG1	P54867	378 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	YPL107W	Q02873	248 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	HOT1	Q03213	719 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	ACL4	Q03771	387 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	COS7	Q07788	383 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	CUE5	Q08412	411 aa	Known RBP	4.01	□□□□□ -1.77
CTK1	YKL139W	FRE7	Q12333	620 aa		4.01	□□□□□ -1.77
CTK1	YKL139W	SRV2	P17555	526 aa	Known RBP	4	□□□□□ -1.77
CTK1	YKL139W	URA4	P20051	364 aa		4	□□□□□ -1.77
CTK1	YKL139W	RPB8	P20436	146 aa		4	□□□□□ -1.77
CTK1	YKL139W	COQ3	P27680	312 aa		4	□□□□□ -1.77
CTK1	YKL139W	YKL023W	P36103	277 aa	Known RBP	4	□□□□□ -1.77
CTK1	YKL139W	PIM1	P36775	1133 aa		4	□□□□□ -1.77
CTK1	YKL139W	ARA1	P38115	344 aa		4	□□□□□ -1.77
CTK1	YKL139W	YHR210C	P38893	341 aa		4	□□□□□ -1.77
CTK1	YKL139W	SER3	P40054	469 aa		4	□□□□□ -1.77
CTK1	YKL139W	YDL218W	Q07629	317 aa		4	□□□□□ -1.77
CTK1	YKL139W	OSW1	Q08692	278 aa		4	□□□□□ -1.77
CTK1	YKL139W	UAF30	Q08747	228 aa		4	□□□□□ -1.77
CTK1	YKL139W	CFT2	Q12102	859 aa	Predicted RBP	4	□□□□□ -1.77
CTK1	YKL139W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4	□□□□□ -1.77	not detected
CTK1	YKL139W	RRI1	Q12468	440 aa		4	□□□□□ -1.77
CTK1	YKL139W	LPD1	P09624	499 aa	Known RBP	3.99	□□□□□ -1.77
CTK1	YKL139W	CNA1	P23287	553 aa		3.99	□□□□□ -1.77
CTK1	YKL139W	RPN2	P32565	945 aa	Known RBP	3.99	□□□□□ -1.77
CTK1	YKL139W	RPS0A	P32905	252 aa	Known RBP	3.99	□□□□□ -1.77
CTK1	YKL139W	TCM62	P38228	572 aa	Known RBP	3.99	□□□□□ -1.77
CTK1	YKL139W	TIF4631	P39935	952 aa	Known RBP	3.99	□□□□□ -1.77
CTK1	YKL139W	BUD32	P53323	261 aa		3.99	□□□□□ -1.77
CTK1	YKL139W	EOS1	P53938	366 aa		3.99	□□□□□ -1.77
CTK1	YKL139W	PRP42	Q03776	544 aa	Known RBP	3.99	□□□□□ -1.77
CTK1	YKL139W	ARP10	Q04549	284 aa		3.99	□□□□□ -1.77
CTK1	YKL139W	YOR365C	Q08844	703 aa		3.99	□□□□□ -1.77
CTK1	YKL139W	RDR1	Q08904	546 aa		3.99	□□□□□ -1.77
CTK1	YKL139W	EDE1	P34216	1381 aa		3.99	□□□□□ -1.77
CTK1	YKL139W	BNR1	P40450	1375 aa		3.99	□□□□□ -1.77
CTK1	YKL139W	RAD52	P06778	471 aa	Known RBP	3.98	□□□□□ -1.77
CTK1	YKL139W	RHO2	P06781	192 aa		3.98	□□□□□ -1.77
CTK1	YKL139W	YMR085W	P0CF18	432 aa		3.98	□□□□□ -1.77
CTK1	YKL139W	RPL1A	P0CX43	217 aa	Known RBP	3.98	□□□□□ -1.77
CTK1	YKL139W	RPL1B	P0CX44	217 aa	Known RBP	3.98	□□□□□ -1.77
CTK1	YKL139W	FLO10	P36170	1169 aa		3.98	□□□□□ -1.77
CTK1	YKL139W	BNA4	P38169	460 aa		3.98	□□□□□ -1.77
CTK1	YKL139W	VRG4	P40107	337 aa		3.98	□□□□□ -1.77
CTK1	YKL139W	YMR147W	P40218	223 aa	Known RBP	3.98	□□□□□ -1.77
CTK1	YKL139W	OCA1	P50946	238 aa	Predicted RBP	3.98	□□□□□ -1.77
CTK1	YKL139W	ZPR1	P53303	486 aa	Known RBP	3.98	□□□□□ -1.77
CTK1	YKL139W	SOL4	P53315	255 aa		3.98	□□□□□ -1.77
CTK1	YKL139W	KTR5	P53966	522 aa	Predicted RBP	3.98	□□□□□ -1.77
CTK1	YKL139W	SHR3	Q02774	210 aa		3.98	□□□□□ -1.77
CTK1	YKL139W	MCP2	Q06567	569 aa		3.98	□□□□□ -1.77
CTK1	YKL139W	VAM3	Q12241	283 aa		3.98	□□□□□ -1.77
CTK1	YKL139W	TUB1	P09733	447 aa	Known RBP	3.97	□□□□□ -1.77
CTK1	YKL139W	ERG11	P10614	530 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	PEP5	P12868	1029 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	SPO7	P18410	259 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	CLN1	P20437	546 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	SGV1	P23293	657 aa	Known RBP	3.97	□□□□□ -1.77
CTK1	YKL139W	BRF1	P29056	596 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	MSN2	P33748	704 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	SWH1	P35845	1188 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	LAS1	P36146	502 aa	Predicted RBP	3.97	□□□□□ -1.77
CTK1	YKL139W	LAG1	P38703	411 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	PHO90	P39535	881 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	NMD5	P46970	1048 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	YJL132W	P47014	750 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	RPT4	P53549	437 aa	Known RBP	3.97	□□□□□ -1.77
CTK1	YKL139W	YMR130W	Q04223	302 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	ORM2	Q06144	216 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	KEL3	Q08979	651 aa	Predicted RBP	3.97	□□□□□ -1.77
CTK1	YKL139W	SKS1	Q12505	502 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	GPH1	P06738	902 aa	Known RBP	3.97	□□□□□ -1.77
CTK1	YKL139W	ILV6	P25605	309 aa	Known RBP	3.97	□□□□□ -1.77
CTK1	YKL139W	POT1	P27796	417 aa	Known RBP RIP-Chip data	3.97	□□□□□ -1.77	not detected
CTK1	YKL139W	HIR2	P32480	875 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	DUG2	P38149	878 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	ECM27	P47144	725 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	YPL014W	Q02606	381 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	RSC9	Q03124	581 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	CAC2	Q04199	468 aa		3.97	□□□□□ -1.77
CTK1	YKL139W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	3.97	□□□□□ -1.77	not detected
CTK1	YKL139W	ATP10	P18496	279 aa		3.96	□□□□□ -1.78
CTK1	YKL139W	MBR1	P23493	339 aa		3.96	□□□□□ -1.78
CTK1	YKL139W	MCM4	P30665	933 aa	Known RBP	3.96	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms