RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USE1	YGL098W	IMA4	P0CW41	589 aa		3.21	□□□□□ -1.9
USE1	YGL098W	PET54	P10834	293 aa		3.21	□□□□□ -1.9
USE1	YGL098W	HOM2	P13663	365 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	NSP1	P14907	823 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	PFK1	P16861	987 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	GLK1	P17709	500 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	AEP2	P22136	580 aa		3.21	□□□□□ -1.9
USE1	YGL098W	NAR1	P23503	491 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	SRO9	P25567	434 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	CSM1	P25651	190 aa		3.21	□□□□□ -1.9
USE1	YGL098W	NAM9	P27929	486 aa		3.21	□□□□□ -1.9
USE1	YGL098W	CAP1	P28495	268 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	SBA1	P28707	216 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	HRR25	P29295	494 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	VMA5	P31412	392 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	LYP1	P32487	611 aa		3.21	□□□□□ -1.9
USE1	YGL098W	NDC1	P32500	655 aa		3.21	□□□□□ -1.9
USE1	YGL098W	MUD1	P32605	298 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	ANP1	P32629	500 aa		3.21	□□□□□ -1.9
USE1	YGL098W	ISC10	P32645	267 aa		3.21	□□□□□ -1.9
USE1	YGL098W	ABD1	P32783	436 aa	Predicted RBP	3.21	□□□□□ -1.9
USE1	YGL098W	PET10	P36139	283 aa		3.21	□□□□□ -1.9
USE1	YGL098W	SKG1	P36169	355 aa		3.21	□□□□□ -1.9
USE1	YGL098W	MRPL3	P36516	390 aa		3.21	□□□□□ -1.9
USE1	YGL098W	STV1	P37296	890 aa		3.21	□□□□□ -1.9
USE1	YGL098W	PAM1	P37304	830 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	YBR056W	P38081	501 aa		3.21	□□□□□ -1.9
USE1	YGL098W	CTP1	P38152	299 aa		3.21	□□□□□ -1.9
USE1	YGL098W	SIF2	P38262	535 aa		3.21	□□□□□ -1.9
USE1	YGL098W	YBR197C	P38306	217 aa		3.21	□□□□□ -1.9
USE1	YGL098W	MSR1	P38714	643 aa		3.21	□□□□□ -1.9
USE1	YGL098W	GIC1	P38785	314 aa		3.21	□□□□□ -1.9
USE1	YGL098W	BIG1	P38813	335 aa		3.21	□□□□□ -1.9
USE1	YGL098W	BZZ1	P38822	633 aa		3.21	□□□□□ -1.9
USE1	YGL098W	LNP1	P38878	278 aa		3.21	□□□□□ -1.9
USE1	YGL098W	YJL206C	P39529	758 aa		3.21	□□□□□ -1.9
USE1	YGL098W	PTI1	P39927	425 aa	Predicted RBP	3.21	□□□□□ -1.9
USE1	YGL098W	NOP16	P40007	231 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	NDE1	P40215	560 aa		3.21	□□□□□ -1.9
USE1	YGL098W	SLM1	P40485	686 aa		3.21	□□□□□ -1.9
USE1	YGL098W	SEC28	P40509	296 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	TIR3	P40552	269 aa		3.21	□□□□□ -1.9
USE1	YGL098W	SAE2	P46946	345 aa		3.21	□□□□□ -1.9
USE1	YGL098W	BUD13	P46947	266 aa	Predicted RBP	3.21	□□□□□ -1.9
USE1	YGL098W	YJR030C	P47101	745 aa		3.21	□□□□□ -1.9
USE1	YGL098W	YJR107W	P47145	328 aa		3.21	□□□□□ -1.9
USE1	YGL098W	RPS7B	P48164	190 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	NIT3	P49954	291 aa		3.21	□□□□□ -1.9
USE1	YGL098W	YML6	P51998	286 aa		3.21	□□□□□ -1.9
USE1	YGL098W	PMT5	P52867	743 aa		3.21	□□□□□ -1.9
USE1	YGL098W	TPN1	P53099	579 aa		3.21	□□□□□ -1.9
USE1	YGL098W	YGL138C	P53122	345 aa		3.21	□□□□□ -1.9
USE1	YGL098W	YGL036W	P53185	909 aa	Predicted RBP	3.21	□□□□□ -1.9
USE1	YGL098W	YNR040W	P53736	256 aa		3.21	□□□□□ -1.9
USE1	YGL098W	NOG2	P53742	486 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	SIW14	P53965	281 aa		3.21	□□□□□ -1.9
USE1	YGL098W	ARL3	Q02804	198 aa		3.21	□□□□□ -1.9
USE1	YGL098W	SEN54	Q02825	467 aa	Predicted RBP	3.21	□□□□□ -1.9
USE1	YGL098W	YML131W	Q03102	365 aa		3.21	□□□□□ -1.9
USE1	YGL098W	TDA1	Q03533	586 aa		3.21	□□□□□ -1.9
USE1	YGL098W	SNU56	Q03782	492 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	YET2	Q04210	160 aa		3.21	□□□□□ -1.9
USE1	YGL098W	RAD33	Q04231	177 aa		3.21	□□□□□ -1.9
USE1	YGL098W	UFO1	Q04511	668 aa		3.21	□□□□□ -1.9
USE1	YGL098W	KAR5	Q04746	504 aa		3.21	□□□□□ -1.9
USE1	YGL098W	IVY1	Q04934	453 aa		3.21	□□□□□ -1.9
USE1	YGL098W	NEJ1	Q06148	342 aa		3.21	□□□□□ -1.9
USE1	YGL098W	YPS7	Q06325	596 aa		3.21	□□□□□ -1.9
USE1	YGL098W	YDL121C	Q07541	149 aa		3.21	□□□□□ -1.9
USE1	YGL098W	YEH1	Q07804	573 aa		3.21	□□□□□ -1.9
USE1	YGL098W	ISA1	Q07821	250 aa	Predicted RBP	3.21	□□□□□ -1.9
USE1	YGL098W	MED7	Q08278	222 aa		3.21	□□□□□ -1.9
USE1	YGL098W	IMA2	Q08295	589 aa		3.21	□□□□□ -1.9
USE1	YGL098W	RPN5	Q12250	445 aa	Known RBP	3.21	□□□□□ -1.9
USE1	YGL098W	MED1	Q12321	566 aa		3.21	□□□□□ -1.9
USE1	YGL098W	HSH49	Q99181	213 aa	Predicted RBP	3.21	□□□□□ -1.9
USE1	YGL098W	CAR1	P00812	333 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	CIT1	P00890	479 aa		3.2	□□□□□ -1.9
USE1	YGL098W	TUB2	P02557	457 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	AI3	P03877	415 aa		3.2	□□□□□ -1.9
USE1	YGL098W	GPH1	P06738	902 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	STE3	P06783	470 aa		3.2	□□□□□ -1.9
USE1	YGL098W	PHO4	P07270	312 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	SEC53	P07283	254 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	MAS1	P10507	462 aa		3.2	□□□□□ -1.9
USE1	YGL098W	SNF3	P10870	884 aa		3.2	□□□□□ -1.9
USE1	YGL098W	RPL3	P14126	387 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	CBS2	P14905	389 aa		3.2	□□□□□ -1.9
USE1	YGL098W	FRS1	P15624	595 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	PHO81	P17442	1178 aa		3.2	□□□□□ -1.9
USE1	YGL098W	SFL1	P20134	766 aa		3.2	□□□□□ -1.9
USE1	YGL098W	ACE2	P21192	770 aa		3.2	□□□□□ -1.9
USE1	YGL098W	RPL24B	P24000	155 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	ERG6	P25087	383 aa	Known RBP	3.2	□□□□□ -1.9
USE1	YGL098W	SED4	P25365	1065 aa		3.2	□□□□□ -1.9
USE1	YGL098W	DMC1	P25453	334 aa		3.2	□□□□□ -1.9
USE1	YGL098W	RSC6	P25632	483 aa		3.2	□□□□□ -1.9
USE1	YGL098W	ECM25	P32525	599 aa		3.2	□□□□□ -1.9
USE1	YGL098W	YSC84	P32793	468 aa		3.2	□□□□□ -1.9
USE1	YGL098W	PDR3	P33200	976 aa		3.2	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 17.8 ms