RNA–Protein interactions for RNA: YDL216C

RRI1, Transcript of Catalytic subunit of the COP9 signalosome (CSN) complex, yeast

Gene RRI1, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRI1	YDL216C	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.25	□□□□□ -1.73	not detected
RRI1	YDL216C	RPT6	Q01939	405 aa	Known RBP	4.25	□□□□□ -1.73
RRI1	YDL216C	YMR087W	Q04299	284 aa		4.25	□□□□□ -1.73
RRI1	YDL216C	FOB1	O13329	566 aa		4.24	□□□□□ -1.73
RRI1	YDL216C	RAD52	P06778	471 aa	Known RBP	4.24	□□□□□ -1.73
RRI1	YDL216C	MRS3	P10566	314 aa		4.24	□□□□□ -1.73
RRI1	YDL216C	MRP7	P12687	371 aa		4.24	□□□□□ -1.73
RRI1	YDL216C	MTF1	P14908	341 aa	Known RBP	4.24	□□□□□ -1.73
RRI1	YDL216C	SGV1	P23293	657 aa	Known RBP	4.24	□□□□□ -1.73
RRI1	YDL216C	YCR007C	P25354	239 aa		4.24	□□□□□ -1.73
RRI1	YDL216C	SWE1	P32944	819 aa		4.24	□□□□□ -1.73
RRI1	YDL216C	SIP2	P34164	415 aa	Known RBP	4.24	□□□□□ -1.73
RRI1	YDL216C	SRO77	P38163	1010 aa		4.24	□□□□□ -1.73
RRI1	YDL216C	MUM2	P38236	366 aa		4.24	□□□□□ -1.73
RRI1	YDL216C	MDM31	P38880	579 aa		4.24	□□□□□ -1.73
RRI1	YDL216C	DHH1	P39517	506 aa	Known RBP	4.24	□□□□□ -1.73
RRI1	YDL216C	NPR2	P39923	615 aa		4.24	□□□□□ -1.73
RRI1	YDL216C	DRN1	P53255	507 aa	Known RBP	4.24	□□□□□ -1.73
RRI1	YDL216C	MFB1	Q04922	465 aa		4.24	□□□□□ -1.73
RRI1	YDL216C	IVY1	Q04934	453 aa		4.24	□□□□□ -1.73
RRI1	YDL216C	SUC2	P00724	532 aa		4.23	□□□□□ -1.73
RRI1	YDL216C	PRP2	P20095	876 aa	Predicted RBP	4.23	□□□□□ -1.73
RRI1	YDL216C	NDC1	P32500	655 aa		4.23	□□□□□ -1.73
RRI1	YDL216C	UTR4	P32626	227 aa		4.23	□□□□□ -1.73
RRI1	YDL216C	MRE11	P32829	692 aa		4.23	□□□□□ -1.73
RRI1	YDL216C	PTR2	P32901	601 aa		4.23	□□□□□ -1.73
RRI1	YDL216C	DUG2	P38149	878 aa		4.23	□□□□□ -1.73
RRI1	YDL216C	BNA4	P38169	460 aa		4.23	□□□□□ -1.73
RRI1	YDL216C	UTP9	P38882	575 aa	Known RBP	4.23	□□□□□ -1.73
RRI1	YDL216C	MET28	P40573	187 aa		4.23	□□□□□ -1.73
RRI1	YDL216C	ARF3	P40994	183 aa	RIP-Chip data	4.23	□□□□□ -1.73	not detected
RRI1	YDL216C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.23	□□□□□ -1.73	not detected
RRI1	YDL216C	AIM22	P47051	409 aa		4.23	□□□□□ -1.73
RRI1	YDL216C	ERP1	Q05359	219 aa	Known RBP	4.23	□□□□□ -1.73
RRI1	YDL216C	RTT103	Q05543	409 aa		4.23	□□□□□ -1.73
RRI1	YDL216C	BNA5	Q05979	453 aa		4.23	□□□□□ -1.73
RRI1	YDL216C	SYO1	Q07395	620 aa		4.23	□□□□□ -1.73
RRI1	YDL216C	PPT2	Q12036	173 aa		4.23	□□□□□ -1.73
RRI1	YDL216C	YDL009C	Q12210	107 aa		4.23	□□□□□ -1.73
RRI1	YDL216C	LSP1	Q12230	341 aa	Known RBP	4.23	□□□□□ -1.73
RRI1	YDL216C	AMD1	P15274	810 aa	Known RBP	4.22	□□□□□ -1.73
RRI1	YDL216C	EXO70	P19658	623 aa		4.22	□□□□□ -1.73
RRI1	YDL216C	ELO2	P25358	347 aa		4.22	□□□□□ -1.73
RRI1	YDL216C	TCM62	P38228	572 aa	Known RBP	4.22	□□□□□ -1.73
RRI1	YDL216C	VPS52	P39904	641 aa		4.22	□□□□□ -1.73
RRI1	YDL216C	TIF4631	P39935	952 aa	Known RBP	4.22	□□□□□ -1.73
RRI1	YDL216C	RTT101	P47050	842 aa		4.22	□□□□□ -1.73
RRI1	YDL216C	PET130	P47065	347 aa		4.22	□□□□□ -1.73
RRI1	YDL216C	HEF3	P53978	1044 aa	Known RBP	4.22	□□□□□ -1.73
RRI1	YDL216C	SLD5	Q03406	294 aa		4.22	□□□□□ -1.73
RRI1	YDL216C	RPC11	Q04307	110 aa	Predicted RBP	4.22	□□□□□ -1.73
RRI1	YDL216C	YTH1	Q06102	208 aa	Predicted RBP	4.22	□□□□□ -1.73
RRI1	YDL216C	SEC39	Q12745	709 aa		4.22	□□□□□ -1.73
RRI1	YDL216C	YMR230W-A	Q3E7B5	62 aa		4.22	□□□□□ -1.73
RRI1	YDL216C	YBR298C-A	Q8TGK4	73 aa		4.22	□□□□□ -1.73
RRI1	YDL216C	RPL15A	P05748	204 aa	Known RBP	4.21	□□□□□ -1.73
RRI1	YDL216C	CST26	P38226	397 aa		4.21	□□□□□ -1.73
RRI1	YDL216C	SPO22	P40511	975 aa		4.21	□□□□□ -1.73
RRI1	YDL216C	DOT5	P40553	215 aa		4.21	□□□□□ -1.73
RRI1	YDL216C	GPI1	P53306	609 aa		4.21	□□□□□ -1.73
RRI1	YDL216C	TIM10	P87108	93 aa		4.21	□□□□□ -1.73
RRI1	YDL216C	MRPL51	Q06090	140 aa	Predicted RBP	4.21	□□□□□ -1.73
RRI1	YDL216C	VPS74	Q06385	345 aa		4.21	□□□□□ -1.73
RRI1	YDL216C	CYB2	P00175	591 aa		4.21	□□□□□ -1.74
RRI1	YDL216C	SPC110	P32380	944 aa		4.21	□□□□□ -1.74
RRI1	YDL216C	FRE1	P32791	686 aa		4.21	□□□□□ -1.74
RRI1	YDL216C	MSN2	P33748	704 aa		4.21	□□□□□ -1.74
RRI1	YDL216C	YEL057C	P39983	233 aa		4.21	□□□□□ -1.74
RRI1	YDL216C	ROK1	P45818	564 aa	Predicted RBP	4.21	□□□□□ -1.74
RRI1	YDL216C	TWF1	P53250	332 aa		4.21	□□□□□ -1.74
RRI1	YDL216C	YDR239C	Q03780	787 aa		4.21	□□□□□ -1.74
RRI1	YDL216C	PHO92	Q06390	306 aa		4.21	□□□□□ -1.74
RRI1	YDL216C	TSR2	Q06672	205 aa	Known RBP	4.21	□□□□□ -1.74
RRI1	YDL216C	SET6	Q12529	373 aa		4.21	□□□□□ -1.74
RRI1	YDL216C	YDL007C-A	Q2V2Q0	85 aa		4.21	□□□□□ -1.74
RRI1	YDL216C	RAV1	P47104	1357 aa		4.2	□□□□□ -1.74
RRI1	YDL216C	COR1	P07256	457 aa		4.2	□□□□□ -1.74
RRI1	YDL216C	RPN12	P32496	274 aa		4.2	□□□□□ -1.74
RRI1	YDL216C	VID24	P38263	362 aa		4.2	□□□□□ -1.74
RRI1	YDL216C	MBB1	P39534	108 aa		4.2	□□□□□ -1.74
RRI1	YDL216C	ERP2	P39704	215 aa		4.2	□□□□□ -1.74
RRI1	YDL216C	ZPR1	P53303	486 aa	Known RBP	4.2	□□□□□ -1.74
RRI1	YDL216C	IRC15	Q02733	499 aa		4.2	□□□□□ -1.74
RRI1	YDL216C	VPS72	Q03388	795 aa		4.2	□□□□□ -1.74
RRI1	YDL216C	RTP1	Q12751	981 aa		4.2	□□□□□ -1.74
RRI1	YDL216C	ARG3	P05150	338 aa		4.19	□□□□□ -1.74
RRI1	YDL216C	BUD14	P27637	709 aa		4.19	□□□□□ -1.74
RRI1	YDL216C	LOS1	P33418	1100 aa	Predicted RBP	4.19	□□□□□ -1.74
RRI1	YDL216C	RPH1	P39956	796 aa		4.19	□□□□□ -1.74
RRI1	YDL216C	YJL213W	P40896	331 aa		4.19	□□□□□ -1.74
RRI1	YDL216C	ELP2	P42935	788 aa		4.19	□□□□□ -1.74
RRI1	YDL216C	IRC6	P43615	237 aa		4.19	□□□□□ -1.74
RRI1	YDL216C	URB2	P47108	1174 aa		4.19	□□□□□ -1.74
RRI1	YDL216C	YDL186W	P48568	277 aa		4.19	□□□□□ -1.74
RRI1	YDL216C	CAF130	P53280	1122 aa	Predicted RBP	4.19	□□□□□ -1.74
RRI1	YDL216C	RLI1	Q03195	608 aa	Known RBP	4.19	□□□□□ -1.74
RRI1	YDL216C	PDS5	Q04264	1277 aa		4.19	□□□□□ -1.74
RRI1	YDL216C	RBS1	Q05672	457 aa	Known RBP	4.19	□□□□□ -1.74
RRI1	YDL216C	COG4	Q06096	861 aa		4.19	□□□□□ -1.74
RRI1	YDL216C	ATG29	Q12092	213 aa		4.19	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 11.4 ms