RNA–Protein interactions for RNA: YDL053C

PBP4, Transcript of Pbp1p binding protein, yeast

Gene PBP4, Length 558 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PBP4	YDL053C	ATS1	P31386	333 aa		3.05	□□□□□ -1.92
PBP4	YDL053C	FRE1	P32791	686 aa		3.05	□□□□□ -1.92
PBP4	YDL053C	PTR2	P32901	601 aa		3.05	□□□□□ -1.92
PBP4	YDL053C	SHP1	P34223	423 aa		3.05	□□□□□ -1.92
PBP4	YDL053C	YBR225W	P38321	900 aa		3.05	□□□□□ -1.92
PBP4	YDL053C	MSR1	P38714	643 aa		3.05	□□□□□ -1.92
PBP4	YDL053C	MDM31	P38880	579 aa		3.05	□□□□□ -1.92
PBP4	YDL053C	KRE9	P39005	276 aa		3.05	□□□□□ -1.92
PBP4	YDL053C	TIF4631	P39935	952 aa	Known RBP	3.05	□□□□□ -1.92
PBP4	YDL053C	ALK1	P43633	760 aa	Known RBP	3.05	□□□□□ -1.92
PBP4	YDL053C	RTT101	P47050	842 aa		3.05	□□□□□ -1.92
PBP4	YDL053C	ARE2	P53629	642 aa	Known RBP	3.05	□□□□□ -1.92
PBP4	YDL053C	RLI1	Q03195	608 aa	Known RBP	3.05	□□□□□ -1.92
PBP4	YDL053C	SLD5	Q03406	294 aa		3.05	□□□□□ -1.92
PBP4	YDL053C	BNA5	Q05979	453 aa		3.05	□□□□□ -1.92
PBP4	YDL053C	SYO1	Q07395	620 aa		3.05	□□□□□ -1.92
PBP4	YDL053C	THP1	Q08231	455 aa		3.05	□□□□□ -1.92
PBP4	YDL053C	PPT2	Q12036	173 aa		3.05	□□□□□ -1.92
PBP4	YDL053C	AVL9	Q12500	764 aa		3.05	□□□□□ -1.92
PBP4	YDL053C	CAR1	P00812	333 aa	Known RBP	3.04	□□□□□ -1.92
PBP4	YDL053C	MTF1	P14908	341 aa	Known RBP	3.04	□□□□□ -1.92
PBP4	YDL053C	PRP16	P15938	1071 aa	Predicted RBP	3.04	□□□□□ -1.92
PBP4	YDL053C	YCR007C	P25354	239 aa		3.04	□□□□□ -1.92
PBP4	YDL053C	PRD1	P25375	712 aa		3.04	□□□□□ -1.92
PBP4	YDL053C	BUD14	P27637	709 aa		3.04	□□□□□ -1.92
PBP4	YDL053C	MSN2	P33748	704 aa		3.04	□□□□□ -1.92
PBP4	YDL053C	WBP1	P33767	430 aa	Known RBP	3.04	□□□□□ -1.92
PBP4	YDL053C	BNA4	P38169	460 aa		3.04	□□□□□ -1.92
PBP4	YDL053C	NPR2	P39923	615 aa		3.04	□□□□□ -1.92
PBP4	YDL053C	RPR2	P40571	144 aa		3.04	□□□□□ -1.92
PBP4	YDL053C	RBG2	P53295	368 aa	Known RBP	3.04	□□□□□ -1.92
PBP4	YDL053C	TIM10	P87108	93 aa		3.04	□□□□□ -1.92
PBP4	YDL053C	FIN1	Q03898	291 aa		3.04	□□□□□ -1.92
PBP4	YDL053C	IVY1	Q04934	453 aa		3.04	□□□□□ -1.92
PBP4	YDL053C	ERP1	Q05359	219 aa	Known RBP	3.04	□□□□□ -1.92
PBP4	YDL053C	YDL009C	Q12210	107 aa		3.04	□□□□□ -1.92
PBP4	YDL053C	RRI2	Q12348	645 aa		3.04	□□□□□ -1.92
PBP4	YDL053C	SET6	Q12529	373 aa		3.04	□□□□□ -1.92
PBP4	YDL053C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	3.03	□□□□□ -1.92	not detected
PBP4	YDL053C	PAP1	P29468	568 aa	Known RBP	3.03	□□□□□ -1.92
PBP4	YDL053C	SPC110	P32380	944 aa		3.03	□□□□□ -1.92
PBP4	YDL053C	UTR4	P32626	227 aa		3.03	□□□□□ -1.92
PBP4	YDL053C	YME1	P32795	747 aa		3.03	□□□□□ -1.92
PBP4	YDL053C	DUG2	P38149	878 aa		3.03	□□□□□ -1.92
PBP4	YDL053C	TCM62	P38228	572 aa	Known RBP	3.03	□□□□□ -1.92
PBP4	YDL053C	MUM2	P38236	366 aa		3.03	□□□□□ -1.92
PBP4	YDL053C	MTC4	P38335	694 aa	Known RBP	3.03	□□□□□ -1.92
PBP4	YDL053C	RPH1	P39956	796 aa		3.03	□□□□□ -1.92
PBP4	YDL053C	DOT5	P40553	215 aa		3.03	□□□□□ -1.92
PBP4	YDL053C	YFR016C	P43597	1233 aa	Known RBP	3.03	□□□□□ -1.92
PBP4	YDL053C	PET130	P47065	347 aa		3.03	□□□□□ -1.92
PBP4	YDL053C	YDL186W	P48568	277 aa		3.03	□□□□□ -1.92
PBP4	YDL053C	HEF3	P53978	1044 aa	Known RBP	3.03	□□□□□ -1.92
PBP4	YDL053C	MFB1	Q04922	465 aa		3.03	□□□□□ -1.92
PBP4	YDL053C	PHO92	Q06390	306 aa		3.03	□□□□□ -1.92
PBP4	YDL053C	MED1	Q12321	566 aa		3.03	□□□□□ -1.92
PBP4	YDL053C	COR1	P07256	457 aa		3.02	□□□□□ -1.93
PBP4	YDL053C	GDH1	P07262	454 aa	Known RBP	3.02	□□□□□ -1.93
PBP4	YDL053C	PRP2	P20095	876 aa	Predicted RBP	3.02	□□□□□ -1.93
PBP4	YDL053C	OCA4	P25366	362 aa		3.02	□□□□□ -1.93
PBP4	YDL053C	YCR022C	P25620	114 aa		3.02	□□□□□ -1.93
PBP4	YDL053C	AGA1	P32323	725 aa		3.02	□□□□□ -1.93
PBP4	YDL053C	YEL057C	P39983	233 aa		3.02	□□□□□ -1.93
PBP4	YDL053C	MET28	P40573	187 aa		3.02	□□□□□ -1.93
PBP4	YDL053C	YJL213W	P40896	331 aa		3.02	□□□□□ -1.93
PBP4	YDL053C	IMP4	P53941	290 aa	Known RBP	3.02	□□□□□ -1.93
PBP4	YDL053C	MRPL51	Q06090	140 aa	Predicted RBP	3.02	□□□□□ -1.93
PBP4	YDL053C	CFT2	Q12102	859 aa	Predicted RBP	3.02	□□□□□ -1.93
PBP4	YDL053C	AYT1	Q12226	474 aa		3.02	□□□□□ -1.93
PBP4	YDL053C	LSP1	Q12230	341 aa	Known RBP	3.02	□□□□□ -1.93
PBP4	YDL053C	FOB1	O13329	566 aa		3.01	□□□□□ -1.93
PBP4	YDL053C	HEM2	P05373	342 aa		3.01	□□□□□ -1.93
PBP4	YDL053C	RPL20A	P0CX23	172 aa	Known RBP	3.01	□□□□□ -1.93
PBP4	YDL053C	RPL20B	P0CX24	172 aa	Predicted RBP	3.01	□□□□□ -1.93
PBP4	YDL053C	HSC82	P15108	705 aa	Known RBP	3.01	□□□□□ -1.93
PBP4	YDL053C	MCK1	P21965	375 aa	Known RBP	3.01	□□□□□ -1.93
PBP4	YDL053C	MBB1	P39534	108 aa		3.01	□□□□□ -1.93
PBP4	YDL053C	SPO22	P40511	975 aa		3.01	□□□□□ -1.93
PBP4	YDL053C	RMD8	P43620	662 aa		3.01	□□□□□ -1.93
PBP4	YDL053C	COS10	P52924	374 aa		3.01	□□□□□ -1.93
PBP4	YDL053C	CAF130	P53280	1122 aa	Predicted RBP	3.01	□□□□□ -1.93
PBP4	YDL053C	ZPR1	P53303	486 aa	Known RBP	3.01	□□□□□ -1.93
PBP4	YDL053C	GPI1	P53306	609 aa		3.01	□□□□□ -1.93
PBP4	YDL053C	RPT6	Q01939	405 aa	Known RBP	3.01	□□□□□ -1.93
PBP4	YDL053C	RAV1	P47104	1357 aa		3	□□□□□ -1.93
PBP4	YDL053C	CYB2	P00175	591 aa		3	□□□□□ -1.93
PBP4	YDL053C	MES1	P00958	751 aa	Known RBP	3	□□□□□ -1.93
PBP4	YDL053C	MRE11	P32829	692 aa		3	□□□□□ -1.93
PBP4	YDL053C	PMU1	P36069	295 aa		3	□□□□□ -1.93
PBP4	YDL053C	CST26	P38226	397 aa		3	□□□□□ -1.93
PBP4	YDL053C	KEL1	P38853	1164 aa	Known RBP	3	□□□□□ -1.93
PBP4	YDL053C	YHR218W	P38899	603 aa		3	□□□□□ -1.93
PBP4	YDL053C	SHO1	P40073	367 aa		3	□□□□□ -1.93
PBP4	YDL053C	IRC15	Q02733	499 aa		3	□□□□□ -1.93
PBP4	YDL053C	YDR239C	Q03780	787 aa		3	□□□□□ -1.93
PBP4	YDL053C	SCW10	Q04951	389 aa		3	□□□□□ -1.93
PBP4	YDL053C	RBS1	Q05672	457 aa	Known RBP	3	□□□□□ -1.93
PBP4	YDL053C	VPS74	Q06385	345 aa		3	□□□□□ -1.93
PBP4	YDL053C	YDL007C-A	Q2V2Q0	85 aa		3	□□□□□ -1.93
PBP4	YDL053C	ARG3	P05150	338 aa		2.99	□□□□□ -1.93

Retrieved 100 of 5,963 RNA–protein pairs in 26.7 ms