RNA–Protein interactions for RNA: YAL040C

CLN3, Transcript of G1 cyclin involved in cell cycle progression, yeast

Gene CLN3, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLN3	YAL040C	NOP15	P53927	220 aa	Predicted RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	CIK1	Q01649	594 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	YPL071C	Q02864	156 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	PNG1	Q02890	363 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	LRS4	Q04087	347 aa	Known RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	PRM6	Q04705	352 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	STE23	Q06010	1027 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	NGL1	Q08213	363 aa	Known RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	THI21	Q08975	551 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	SMF3	Q12078	473 aa	Predicted RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	RIO1	Q12196	484 aa	Known RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	2.31	□□□□□ -2.04	not detected
CLN3	YAL040C	RTN2	Q12443	393 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	TAO3	P40468	2376 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	PRC1	P00729	532 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	YMR085W	P0CF18	432 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	GLN4	P13188	809 aa	Known RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	VPS3	P23643	1011 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	CLB4	P24871	460 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	YCL002C	P25565	263 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	FUB1	P25659	250 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	MRPL36	P36531	177 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	YBR062C	P38239	180 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	YBR138C	P38277	524 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	POP4	P38336	279 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	ARG2	P40360	574 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	ATM1	P40416	690 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	MAD2	P40958	196 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	CDC1	P40986	491 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	SEC27	P41811	889 aa	Known RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	YFL052W	P43551	465 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	SIP4	P46954	829 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	TAH11	P47112	604 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	PSP1	P50896	841 aa	Known RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	MNT2	P53059	558 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	YGR127W	P53275	312 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	KTR6	P54070	446 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	ARP4	P80428	489 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	MRS2	Q01926	470 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	FMP30	Q02883	468 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	YMR102C	Q03177	834 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	HOT1	Q03213	719 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	SPG3	Q04398	127 aa	Predicted RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	SNO4	Q04902	237 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	TRI1	Q05024	226 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	HRD3	Q05787	833 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	THI7	Q05998	598 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	YLR345W	Q06137	509 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	THI20	Q08224	551 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	HSP33	Q08914	237 aa	Known RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	HSP32	Q08992	237 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	NBP2	Q12163	236 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	HRT3	Q12347	344 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	DBP10	Q12389	995 aa	Known RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	YLR149C	Q99296	730 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	IZH4	Q99393	312 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	UBR1	P19812	1950 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	ILV2	P07342	687 aa	Known RBP	2.3	□□□□□ -2.04
CLN3	YAL040C	SRV2	P17555	526 aa	Known RBP	2.3	□□□□□ -2.04
CLN3	YAL040C	MET16	P18408	261 aa	Predicted RBP	2.3	□□□□□ -2.04
CLN3	YAL040C	PRP4	P20053	465 aa	Known RBP	2.3	□□□□□ -2.04
CLN3	YAL040C	REC107	P21651	314 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	OCA4	P25366	362 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	GID7	P25569	745 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	POL4	P25615	582 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	MDL1	P33310	695 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	TEF4	P36008	412 aa	Known RBP	2.3	□□□□□ -2.04
CLN3	YAL040C	SET3	P36124	751 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	RFS1	P38234	210 aa	Known RBP	2.3	□□□□□ -2.04
CLN3	YAL040C	YBR053C	P38235	358 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	TDP1	P38319	544 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	SLX1	P38324	304 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	SMF2	P38778	549 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	PCL5	P38794	229 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	LYS9	P38999	446 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	PZF1	P39933	429 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	YIR016W	P40572	265 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	SHR5	P41912	237 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	ARC1	P46672	376 aa	Known RBP	2.3	□□□□□ -2.04
CLN3	YAL040C	TRS85	P46944	698 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	YJL163C	P46996	555 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	TIM13	P53299	105 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	NOP13	P53883	403 aa	Known RBP RIP-Chip data	2.3	□□□□□ -2.04	not detected
CLN3	YAL040C	TIM11	P81449	96 aa	Predicted RBP	2.3	□□□□□ -2.04
CLN3	YAL040C	NRG1	Q03125	231 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	HER2	Q03557	464 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	YMR155W	Q03795	547 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	BUD22	Q04347	519 aa	Known RBP	2.3	□□□□□ -2.04
CLN3	YAL040C	YMR027W	Q04371	470 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	ERV41	Q04651	352 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	FAR8	Q05040	523 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	CUE5	Q08412	411 aa	Known RBP	2.3	□□□□□ -2.04
CLN3	YAL040C	GPM2	Q12008	311 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	RTK1	Q12100	620 aa	Predicted RBP	2.3	□□□□□ -2.04
CLN3	YAL040C	SEY1	Q99287	776 aa		2.3	□□□□□ -2.04
CLN3	YAL040C	CSF1	Q12150	2958 aa		2.29	□□□□□ -2.04
CLN3	YAL040C	IRA2	P19158	3079 aa		2.29	□□□□□ -2.04
CLN3	YAL040C	QCR6	P00127	147 aa		2.29	□□□□□ -2.04
CLN3	YAL040C	RPS17A	P02407	136 aa	Known RBP	2.29	□□□□□ -2.04
CLN3	YAL040C	ARG3	P05150	338 aa		2.29	□□□□□ -2.04

Retrieved 100 of 5,963 RNA–protein pairs in 16.9 ms