RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 IL17RBQ9NRM6 502 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 THEGQ9P2T0 379 aa11.28□□□□□ -0.6
VRK3-224ENST00000601849 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.28□□□□□ -0.6
VRK3-224ENST00000601849 KIF28PB7ZC32 967 aa11.27□□□□□ -0.61
VRK3-224ENST00000601849 B4GALT4O60513 344 aa11.27□□□□□ -0.61
VRK3-224ENST00000601849 CALML3P27482 149 aa11.27□□□□□ -0.61
VRK3-224ENST00000601849 PBX2P40425 430 aa11.27□□□□□ -0.61
VRK3-224ENST00000601849 NT5C2P49902 561 aa11.27□□□□□ -0.61
VRK3-224ENST00000601849 ALDH5A1P51649 535 aaPredicted RBP11.27□□□□□ -0.61
VRK3-224ENST00000601849 AAK1Q2M2I8 961 aa11.27□□□□□ -0.61
VRK3-224ENST00000601849 SYDE2Q5VT97 1194 aa11.27□□□□□ -0.61
VRK3-224ENST00000601849 BTNL9Q6UXG8 535 aa11.27□□□□□ -0.61
VRK3-224ENST00000601849 RNF207Q6ZRF8 634 aa11.27□□□□□ -0.61
VRK3-224ENST00000601849 MFSD6Q6ZSS7 791 aa11.27□□□□□ -0.61
VRK3-224ENST00000601849 OR6J1Q8NGC5 347 aa11.27□□□□□ -0.61
VRK3-224ENST00000601849 MORC4Q8TE76 937 aa11.27□□□□□ -0.61
VRK3-224ENST00000601849 MTG1Q9BT17 334 aaPredicted RBP11.27□□□□□ -0.61
VRK3-224ENST00000601849 TRPV6Q9H1D0 765 aa11.27□□□□□ -0.61
VRK3-224ENST00000601849 ALDH8A1Q9H2A2 487 aaPredicted RBP11.27□□□□□ -0.61
VRK3-224ENST00000601849 RNF41Q9H4P4 317 aaPredicted RBP11.27□□□□□ -0.61
VRK3-224ENST00000601849 TCP11L1Q9NUJ3 509 aa11.27□□□□□ -0.61
VRK3-224ENST00000601849 NOD1Q9Y239 953 aa11.27□□□□□ -0.61
VRK3-224ENST00000601849 GTPBP6O43824 516 aaPredicted RBP11.26□□□□□ -0.61
VRK3-224ENST00000601849 NMT2O60551 498 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 MYL3P08590 195 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 RFC2P35250 354 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 SLC16A2P36021 539 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 NOVP48745 357 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 PSMC6P62333 389 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 CCDC85BQ15834 202 aaPredicted RBP11.26□□□□□ -0.61
VRK3-224ENST00000601849 CCDC178Q5BJE1 867 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 FAM47CQ5HY64 1035 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 PPP2R2DQ66LE6 453 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 DNERQ8NFT8 737 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 SCFD2Q8WU76 684 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 ASB2Q96Q27 587 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 TMEM47Q9BQJ4 181 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 NOC4LQ9BVI4 516 aaKnown RBP11.26□□□□□ -0.61
VRK3-224ENST00000601849 MAF1Q9H063 256 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 NKX2-4Q9H2Z4 354 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 GPCPD1Q9NPB8 672 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 INCENPQ9NQS7 918 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 PCDHA11Q9Y5I1 949 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 ASTN1O14525 1302 aa11.26□□□□□ -0.61
VRK3-224ENST00000601849 TRIM6-TRIM34B2RNG4 842 aa11.25□□□□□ -0.61
VRK3-224ENST00000601849 FGAP02671 866 aa11.25□□□□□ -0.61
VRK3-224ENST00000601849 FGRP09769 529 aa11.25□□□□□ -0.61
VRK3-224ENST00000601849 ATP2A2P16615 1042 aaKnown RBP11.25□□□□□ -0.61
VRK3-224ENST00000601849 PTPN11Q06124 597 aaPredicted RBP11.25□□□□□ -0.61
VRK3-224ENST00000601849 BFSP2Q13515 415 aa11.25□□□□□ -0.61
VRK3-224ENST00000601849 PPP2R5BQ15173 497 aa11.25□□□□□ -0.61
VRK3-224ENST00000601849 TMEM67Q5HYA8 995 aa11.25□□□□□ -0.61
VRK3-224ENST00000601849 GPATCH4Q5T3I0 446 aaKnown RBP11.25□□□□□ -0.61
VRK3-224ENST00000601849 TTBK2Q6IQ55 1244 aa11.25□□□□□ -0.61
VRK3-224ENST00000601849 NFRKBQ6P4R8 1299 aa11.25□□□□□ -0.61
VRK3-224ENST00000601849 CCDC155Q8N6L0 562 aa11.25□□□□□ -0.61
VRK3-224ENST00000601849 FTOQ9C0B1 505 aaKnown RBP eCLIP11.25□□□□□ -0.61
VRK3-224ENST00000601849 CXXC1Q9P0U4 656 aaPredicted RBP11.25□□□□□ -0.61
VRK3-224ENST00000601849 PCDHB15Q9Y5E8 787 aa11.25□□□□□ -0.61
VRK3-224ENST00000601849 TNKSO95271 1327 aa11.25□□□□□ -0.61
VRK3-224ENST00000601849 RBM47A0AV96 593 aaKnown RBP11.24□□□□□ -0.61
VRK3-224ENST00000601849 ZNF213O14771 459 aa11.24□□□□□ -0.61
VRK3-224ENST00000601849 TXNP10599 105 aaKnown RBP11.24□□□□□ -0.61
VRK3-224ENST00000601849 PURAQ00577 322 aaKnown RBP11.24□□□□□ -0.61
VRK3-224ENST00000601849 TTLL4Q14679 1199 aa11.24□□□□□ -0.61
VRK3-224ENST00000601849 SKIV2LQ15477 1246 aaKnown RBP11.24□□□□□ -0.61
VRK3-224ENST00000601849 VPS53Q5VIR6 699 aa11.24□□□□□ -0.61
VRK3-224ENST00000601849 IQCA1Q86XH1 822 aa11.24□□□□□ -0.61
VRK3-224ENST00000601849 MCF2L2Q86YR7 1114 aa11.24□□□□□ -0.61
VRK3-224ENST00000601849 USP38Q8NB14 1042 aa11.24□□□□□ -0.61
VRK3-224ENST00000601849 RGS22Q8NE09 1264 aa11.24□□□□□ -0.61
VRK3-224ENST00000601849 PHOSPHO2Q8TCD6 241 aa11.24□□□□□ -0.61
VRK3-224ENST00000601849 OTUD7AQ8TE49 926 aaPredicted RBP11.24□□□□□ -0.61
VRK3-224ENST00000601849 ESR2Q92731 530 aa11.24□□□□□ -0.61
VRK3-224ENST00000601849 SCLYQ96I15 445 aa11.24□□□□□ -0.61
VRK3-224ENST00000601849 GRIN2DO15399 1336 aa11.24□□□□□ -0.61
VRK3-224ENST00000601849 FRMPD2Q68DX3 1309 aaPredicted RBP11.24□□□□□ -0.61
VRK3-224ENST00000601849 MUC3AQ02505 3323 aa11.23□□□□□ -0.61
VRK3-224ENST00000601849 PITPNM1O00562 1244 aa11.23□□□□□ -0.61
VRK3-224ENST00000601849 NFIBO00712 420 aa11.23□□□□□ -0.61
VRK3-224ENST00000601849 HSPD1P10809 573 aaKnown RBP11.23□□□□□ -0.61
VRK3-224ENST00000601849 PDHBP11177 359 aa11.23□□□□□ -0.61
VRK3-224ENST00000601849 CYP2C9P11712 490 aa11.23□□□□□ -0.61
VRK3-224ENST00000601849 PDE1AP54750 535 aa11.23□□□□□ -0.61
VRK3-224ENST00000601849 CHMP4BP1P59074 171 aa11.23□□□□□ -0.61
VRK3-224ENST00000601849 RPS6P62753 249 aaKnown RBP11.23□□□□□ -0.61
VRK3-224ENST00000601849 NBPF20Q3BBV1 942 aa11.23□□□□□ -0.61
VRK3-224ENST00000601849 DEFB128Q7Z7B8 93 aa11.23□□□□□ -0.61
VRK3-224ENST00000601849 MICALL1Q8N3F8 863 aa11.23□□□□□ -0.61
VRK3-224ENST00000601849 RILPL2Q969X0 211 aa11.23□□□□□ -0.61
VRK3-224ENST00000601849 PURBQ96QR8 312 aaKnown RBP11.23□□□□□ -0.61
VRK3-224ENST00000601849 SLC9A7Q96T83 725 aa11.23□□□□□ -0.61
VRK3-224ENST00000601849 WNT8AQ9H1J5 351 aa11.23□□□□□ -0.61
VRK3-224ENST00000601849 TRMT13Q9NUP7 481 aaKnown RBP11.23□□□□□ -0.61
VRK3-224ENST00000601849 UMODL1Q5DID0 1318 aa11.23□□□□□ -0.61
VRK3-224ENST00000601849 WDR19Q8NEZ3 1342 aa11.23□□□□□ -0.61
VRK3-224ENST00000601849 A6NJR5 290 aa11.22□□□□□ -0.61
VRK3-224ENST00000601849 MCM3APO60318 1980 aa11.22□□□□□ -0.61
VRK3-224ENST00000601849 PARNO95453 639 aaKnown RBP11.22□□□□□ -0.61
VRK3-224ENST00000601849 ZMYM6O95789 1325 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms