RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 RRP36Q96EU6 259 aaKnown RBP16.99■□□□□ 0.31
UPF1-204ENST00000596842 MTA3Q9BTC8 594 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 IL17RBQ9NRM6 502 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 ECM29Q5VYK3 1845 aa16.98■□□□□ 0.31
UPF1-204ENST00000596842 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.98■□□□□ 0.31
UPF1-204ENST00000596842 TMEM260Q9NX78 707 aa16.98■□□□□ 0.31
UPF1-204ENST00000596842 GOLGA6CA6NDK9 693 aa16.98■□□□□ 0.31
UPF1-204ENST00000596842 GOLGA6DP0CG33 693 aa16.98■□□□□ 0.31
UPF1-204ENST00000596842 LRRC31Q6UY01 552 aa16.98■□□□□ 0.31
UPF1-204ENST00000596842 LRRC1Q9BTT6 524 aa16.98■□□□□ 0.31
UPF1-204ENST00000596842 GOLGA6AQ9NYA3 693 aa16.98■□□□□ 0.31
UPF1-204ENST00000596842 FRMPD2Q68DX3 1309 aaPredicted RBP16.98■□□□□ 0.31
UPF1-204ENST00000596842 ARL6IP4Q66PJ3 421 aaKnown RBP16.98■□□□□ 0.31
UPF1-204ENST00000596842 TTI2Q6NXR4 508 aa16.98■□□□□ 0.31
UPF1-204ENST00000596842 DMGDHQ9UI17 866 aaKnown RBP16.98■□□□□ 0.31
UPF1-204ENST00000596842 ESYT3A0FGR9 886 aa16.97■□□□□ 0.31
UPF1-204ENST00000596842 EPHB6O15197 1021 aa16.97■□□□□ 0.31
UPF1-204ENST00000596842 CYTH3O43739 400 aa16.97■□□□□ 0.31
UPF1-204ENST00000596842 TACC1O75410 805 aa16.97■□□□□ 0.31
UPF1-204ENST00000596842 EIF4A3P38919 411 aaKnown RBP16.97■□□□□ 0.31
UPF1-204ENST00000596842 CACNB1Q02641 598 aaPredicted RBP16.97■□□□□ 0.31
UPF1-204ENST00000596842 RASSF7Q02833 373 aa16.97■□□□□ 0.31
UPF1-204ENST00000596842 GIMAP7Q8NHV1 300 aa16.97■□□□□ 0.31
UPF1-204ENST00000596842 NLRP3Q96P20 1036 aa16.97■□□□□ 0.31
UPF1-204ENST00000596842 DUSP9Q99956 384 aaKnown RBP16.97■□□□□ 0.31
UPF1-204ENST00000596842 HPCAL4Q9UM19 191 aa16.97■□□□□ 0.31
UPF1-204ENST00000596842 ADAMTSL3P82987 1691 aa16.97■□□□□ 0.31
UPF1-204ENST00000596842 EHBP1Q8NDI1 1231 aa16.97■□□□□ 0.31
UPF1-204ENST00000596842 CALML4Q96GE6 196 aa16.97■□□□□ 0.31
UPF1-204ENST00000596842 ARPP21Q9UBL0 812 aaPredicted RBP16.97■□□□□ 0.31
UPF1-204ENST00000596842 SEC63Q9UGP8 760 aaKnown RBP16.97■□□□□ 0.31
UPF1-204ENST00000596842 PSMD14O00487 310 aa16.97■□□□□ 0.31
UPF1-204ENST00000596842 CCT5P48643 541 aa16.97■□□□□ 0.31
UPF1-204ENST00000596842 ATP1A2P50993 1020 aa16.97■□□□□ 0.31
UPF1-204ENST00000596842 BSDC1Q9NW68 430 aaPredicted RBP16.97■□□□□ 0.31
UPF1-204ENST00000596842 COL1A1P02452 1464 aaPredicted RBP16.97■□□□□ 0.31
UPF1-204ENST00000596842 ZEB2O60315 1214 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 OR52Z1P0C646 297 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 C4orf32Q8N8J7 132 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 FAM76AQ8TAV0 307 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 TBCKQ8TEA7 893 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 MS4A14Q96JA4 679 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 DNAJC7Q99615 494 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 TRIM9Q9C026 710 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 FAM107BQ9H098 131 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.96■□□□□ 0.31
UPF1-204ENST00000596842 CHD4Q14839 1912 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 POTEMA6NI47 508 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 KLRC4O43908 158 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 SYF2O95926 243 aaKnown RBP16.96■□□□□ 0.31
UPF1-204ENST00000596842 LDHBP07195 334 aaKnown RBP16.96■□□□□ 0.31
UPF1-204ENST00000596842 ZBED6P86452 979 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 POTEDQ86YR6 584 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 NELFCDQ8IXH7 590 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 THAP9Q9H5L6 903 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 EFCC1Q9HA90 598 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 MED4Q9NPJ6 270 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 ATP8A2Q9NTI2 1148 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 NID2Q14112 1375 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 SRGNP10124 158 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 CCNE1P24864 410 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 RDXP35241 583 aaKnown RBP16.96■□□□□ 0.31
UPF1-204ENST00000596842 MAGEA1P43355 309 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 PPP2R5AQ15172 486 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 TBC1D9BQ66K14 1250 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 GIMAP8Q8ND71 665 aaPredicted RBP16.96■□□□□ 0.31
UPF1-204ENST00000596842 COA7Q96BR5 231 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 SAMM50Q9Y512 469 aa16.96■□□□□ 0.31
UPF1-204ENST00000596842 PDS5AQ29RF7 1337 aaKnown RBP16.96■□□□□ 0.3
UPF1-204ENST00000596842 BICDL2A1A5D9 508 aa16.95■□□□□ 0.3
UPF1-204ENST00000596842 EIF3CLB5ME19 914 aaKnown RBP16.95■□□□□ 0.3
UPF1-204ENST00000596842 TNNI2P48788 182 aa16.95■□□□□ 0.3
UPF1-204ENST00000596842 GFPT1Q06210 699 aaPredicted RBP16.95■□□□□ 0.3
UPF1-204ENST00000596842 FAM182BQ5T319 152 aa16.95■□□□□ 0.3
UPF1-204ENST00000596842 ZNF507Q8TCN5 953 aa16.95■□□□□ 0.3
UPF1-204ENST00000596842 EIF3CQ99613 913 aaKnown RBP16.95■□□□□ 0.3
UPF1-204ENST00000596842 TMEM47Q9BQJ4 181 aa16.95■□□□□ 0.3
UPF1-204ENST00000596842 PACSIN2Q9UNF0 486 aaPredicted RBP16.95■□□□□ 0.3
UPF1-204ENST00000596842 APBA1Q02410 837 aa16.95■□□□□ 0.3
UPF1-204ENST00000596842 NONOQ15233 471 aaKnown RBP eCLIP16.95■□□□□ 0.3
UPF1-204ENST00000596842 GRIK5Q16478 980 aa16.95■□□□□ 0.3
UPF1-204ENST00000596842 CLEC10AQ8IUN9 316 aa16.95■□□□□ 0.3
UPF1-204ENST00000596842 GLIS3Q8NEA6 775 aa16.95■□□□□ 0.3
UPF1-204ENST00000596842 PIGSQ96S52 555 aa16.95■□□□□ 0.3
UPF1-204ENST00000596842 PLEKHG2Q9H7P9 1386 aa16.95■□□□□ 0.3
UPF1-204ENST00000596842 GUCY2FP51841 1108 aa16.95■□□□□ 0.3
UPF1-204ENST00000596842 KIF11P52732 1056 aa16.95■□□□□ 0.3
UPF1-204ENST00000596842 ZNF263O14978 683 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 ORC4O43929 436 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 PICALMQ13492 652 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 CCDC40Q4G0X9 1142 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 FAM114A1Q8IWE2 563 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 PROCA1Q8NCQ7 364 aaPredicted RBP16.94■□□□□ 0.3
UPF1-204ENST00000596842 MAD2L2Q9UI95 211 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 PCDHA13Q9Y5I0 950 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 LRRC53A6NM62 1247 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 RHOBTB3O94955 611 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 PAFAH1B1P43034 410 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 TUBB4BP68371 445 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 DNAAF5Q86Y56 855 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms