RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 GCOM1H8Y6P7 765 aaPredicted RBP19.64■□□□□ 0.73
NUP88-210ENST00000574867 PIK3CDO00329 1044 aa19.64■□□□□ 0.73
NUP88-210ENST00000574867 DTNBO60941 627 aa19.64■□□□□ 0.73
NUP88-210ENST00000574867 POLR2MP0CAP2 368 aa19.64■□□□□ 0.73
NUP88-210ENST00000574867 GJB2P29033 226 aa19.64■□□□□ 0.73
NUP88-210ENST00000574867 GNA11P29992 359 aa19.64■□□□□ 0.73
NUP88-210ENST00000574867 HSD17B4P51659 736 aa19.64■□□□□ 0.73
NUP88-210ENST00000574867 LBX1P52954 281 aa19.64■□□□□ 0.73
NUP88-210ENST00000574867 TRIM29Q14134 588 aa19.64■□□□□ 0.73
NUP88-210ENST00000574867 C6orf50Q9HD87 102 aa19.64■□□□□ 0.73
NUP88-210ENST00000574867 RIC8AQ9NPQ8 531 aa19.64■□□□□ 0.73
NUP88-210ENST00000574867 SLC5A4Q9NY91 659 aa19.64■□□□□ 0.73
NUP88-210ENST00000574867 ZNFX1Q9P2E3 1918 aaKnown RBP19.64■□□□□ 0.73
NUP88-210ENST00000574867 CFBP00751 764 aa19.63■□□□□ 0.73
NUP88-210ENST00000574867 CALML3P27482 149 aa19.63■□□□□ 0.73
NUP88-210ENST00000574867 MRPL12P52815 198 aaKnown RBP19.63■□□□□ 0.73
NUP88-210ENST00000574867 PRMT2P55345 433 aa19.63■□□□□ 0.73
NUP88-210ENST00000574867 RPS6P62753 249 aaKnown RBP19.63■□□□□ 0.73
NUP88-210ENST00000574867 GALNT17Q6IS24 598 aa19.63■□□□□ 0.73
NUP88-210ENST00000574867 SLC30A10Q6XR72 485 aa19.63■□□□□ 0.73
NUP88-210ENST00000574867 TSHZ2Q9NRE2 1034 aa19.63■□□□□ 0.73
NUP88-210ENST00000574867 DOCK3Q8IZD9 2030 aa19.63■□□□□ 0.73
NUP88-210ENST00000574867 DNAJC25-GNG10A0A024R161 153 aa19.63■□□□□ 0.73
NUP88-210ENST00000574867 RGS2P41220 211 aa19.63■□□□□ 0.73
NUP88-210ENST00000574867 CAP1Q01518 475 aa19.63■□□□□ 0.73
NUP88-210ENST00000574867 MAP2K5Q13163 448 aa19.63■□□□□ 0.73
NUP88-210ENST00000574867 BICD2Q8TD16 824 aa19.63■□□□□ 0.73
NUP88-210ENST00000574867 SRRDQ9UH36 339 aa19.63■□□□□ 0.73
NUP88-210ENST00000574867 PLXNA1Q9UIW2 1896 aa19.63■□□□□ 0.73
NUP88-210ENST00000574867 LCTP09848 1927 aa19.62■□□□□ 0.73
NUP88-210ENST00000574867 POTEB2H3BUK9 544 aa19.62■□□□□ 0.73
NUP88-210ENST00000574867 NLRP5P59047 1200 aa19.62■□□□□ 0.73
NUP88-210ENST00000574867 BAATQ14032 418 aaPredicted RBP19.62■□□□□ 0.73
NUP88-210ENST00000574867 USP6NLQ92738 828 aa19.62■□□□□ 0.73
NUP88-210ENST00000574867 SHISA4Q96DD7 197 aa19.62■□□□□ 0.73
NUP88-210ENST00000574867 C8orf76Q96K31 380 aa19.62■□□□□ 0.73
NUP88-210ENST00000574867 APBA2Q99767 749 aa19.62■□□□□ 0.73
NUP88-210ENST00000574867 GJD2Q9UKL4 321 aa19.62■□□□□ 0.73
NUP88-210ENST00000574867 HOXC6P09630 235 aa19.61■□□□□ 0.73
NUP88-210ENST00000574867 PRKCZQ05513 592 aa19.61■□□□□ 0.73
NUP88-210ENST00000574867 DPP9Q86TI2 863 aa19.61■□□□□ 0.73
NUP88-210ENST00000574867 DAGLBQ8NCG7 672 aa19.61■□□□□ 0.73
NUP88-210ENST00000574867 PHF20Q9BVI0 1012 aa19.61■□□□□ 0.73
NUP88-210ENST00000574867 DIS3Q9Y2L1 958 aaKnown RBP19.61■□□□□ 0.73
NUP88-210ENST00000574867 MEIS2O14770 477 aa19.61■□□□□ 0.73
NUP88-210ENST00000574867 MCTP2Q6DN12 878 aa19.61■□□□□ 0.73
NUP88-210ENST00000574867 OTOP1Q7RTM1 612 aa19.61■□□□□ 0.73
NUP88-210ENST00000574867 FAM133AQ8N9E0 248 aa19.61■□□□□ 0.73
NUP88-210ENST00000574867 SYTL5Q8TDW5 730 aaPredicted RBP19.61■□□□□ 0.73
NUP88-210ENST00000574867 TRIM17Q9Y577 477 aa19.61■□□□□ 0.73
NUP88-210ENST00000574867 PGK2P07205 417 aa19.6■□□□□ 0.73
NUP88-210ENST00000574867 FLT3LGP49771 235 aa19.6■□□□□ 0.73
NUP88-210ENST00000574867 TBC1D5Q92609 795 aa19.6■□□□□ 0.73
NUP88-210ENST00000574867 BRMS1Q9HCU9 246 aa19.6■□□□□ 0.73
NUP88-210ENST00000574867 ADD3Q9UEY8 706 aaKnown RBP19.6■□□□□ 0.73
NUP88-210ENST00000574867 PCDHA4Q9UN74 947 aa19.6■□□□□ 0.73
NUP88-210ENST00000574867 COBLO75128 1261 aa19.6■□□□□ 0.73
NUP88-210ENST00000574867 XRCC5P13010 732 aaKnown RBP19.6■□□□□ 0.73
NUP88-210ENST00000574867 PDCP20941 246 aa19.6■□□□□ 0.73
NUP88-210ENST00000574867 HOXA13P31271 388 aaPredicted RBP19.6■□□□□ 0.73
NUP88-210ENST00000574867 IRF5Q13568 498 aa19.6■□□□□ 0.73
NUP88-210ENST00000574867 ZNF792Q3KQV3 632 aa19.6■□□□□ 0.73
NUP88-210ENST00000574867 KRT40Q6A162 431 aa19.6■□□□□ 0.73
NUP88-210ENST00000574867 USP17L6PQ6QN14 398 aa19.6■□□□□ 0.73
NUP88-210ENST00000574867 REXO1Q8N1G1 1221 aaKnown RBP19.6■□□□□ 0.73
NUP88-210ENST00000574867 DNERQ8NFT8 737 aa19.6■□□□□ 0.73
NUP88-210ENST00000574867 PRDM10Q9NQV6 1147 aa19.6■□□□□ 0.73
NUP88-210ENST00000574867 LOC102724159A0A0B4J2E5 919 aa19.59■□□□□ 0.73
NUP88-210ENST00000574867 AP3B2Q13367 1082 aa19.59■□□□□ 0.73
NUP88-210ENST00000574867 PWP2Q15269 919 aaKnown RBP19.59■□□□□ 0.73
NUP88-210ENST00000574867 ZNF467Q7Z7K2 595 aaPredicted RBP19.59■□□□□ 0.73
NUP88-210ENST00000574867 FBXO18Q8NFZ0 1043 aa19.59■□□□□ 0.73
NUP88-210ENST00000574867 GABRQQ9UN88 632 aa19.59■□□□□ 0.73
NUP88-210ENST00000574867 KCNJ14Q9UNX9 436 aa19.59■□□□□ 0.73
NUP88-210ENST00000574867 FOSP01100 380 aaPredicted RBP19.58■□□□□ 0.73
NUP88-210ENST00000574867 MMP1P03956 469 aa19.58■□□□□ 0.73
NUP88-210ENST00000574867 CLK2P49760 499 aaKnown RBP19.58■□□□□ 0.73
NUP88-210ENST00000574867 UBE2SQ16763 222 aa19.58■□□□□ 0.73
NUP88-210ENST00000574867 CTU1Q7Z7A3 348 aaKnown RBP19.58■□□□□ 0.73
NUP88-210ENST00000574867 BLIDQ8IZY5 108 aa19.58■□□□□ 0.73
NUP88-210ENST00000574867 GJB4Q9NTQ9 266 aa19.58■□□□□ 0.73
NUP88-210ENST00000574867 FOXD4L1Q9NU39 408 aa19.58■□□□□ 0.73
NUP88-210ENST00000574867 COL20A1Q9P218 1284 aa19.58■□□□□ 0.73
NUP88-210ENST00000574867 SPDYE3A6NKU9 549 aa19.58■□□□□ 0.72
NUP88-210ENST00000574867 CNTN2Q02246 1040 aa19.58■□□□□ 0.72
NUP88-210ENST00000574867 NPY5RQ15761 445 aa19.58■□□□□ 0.72
NUP88-210ENST00000574867 TRMT44Q8IYL2 757 aaKnown RBP19.58■□□□□ 0.72
NUP88-210ENST00000574867 MPHOSPH6Q99547 160 aaKnown RBP19.58■□□□□ 0.72
NUP88-210ENST00000574867 EHMT1Q9H9B1 1298 aa19.58■□□□□ 0.72
NUP88-210ENST00000574867 RBM19Q9Y4C8 960 aaKnown RBP19.58■□□□□ 0.72
NUP88-210ENST00000574867 CYP2B6P20813 491 aa19.57■□□□□ 0.72
NUP88-210ENST00000574867 FOSBP53539 338 aa19.57■□□□□ 0.72
NUP88-210ENST00000574867 SAFBQ15424 915 aaKnown RBP eCLIP19.57■□□□□ 0.72
NUP88-210ENST00000574867 MSL3Q8N5Y2 521 aaKnown RBP19.57■□□□□ 0.72
NUP88-210ENST00000574867 RAET1EQ8TD07 263 aa19.57■□□□□ 0.72
NUP88-210ENST00000574867 NSUN6Q8TEA1 469 aaKnown RBP19.57■□□□□ 0.72
NUP88-210ENST00000574867 MAML3Q96JK9 1138 aa19.57■□□□□ 0.72
NUP88-210ENST00000574867 RMDN3Q96TC7 470 aa19.57■□□□□ 0.72
NUP88-210ENST00000574867 FRMPD4Q14CM0 1322 aa19.57■□□□□ 0.72
NUP88-210ENST00000574867 B4DLN1 442 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms