RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SMCHD1A6NHR9 2005 aa17.49■□□□□ 0.39
VPS39-210ENST00000568357 CYTH3O43739 400 aa17.49■□□□□ 0.39
VPS39-210ENST00000568357 PPP1R11O60927 126 aaPredicted RBP17.49■□□□□ 0.39
VPS39-210ENST00000568357 LIFRP42702 1097 aa17.49■□□□□ 0.39
VPS39-210ENST00000568357 EXOSC10Q01780 885 aaKnown RBP17.49■□□□□ 0.39
VPS39-210ENST00000568357 LRRC26Q2I0M4 334 aa17.49■□□□□ 0.39
VPS39-210ENST00000568357 MORC4Q8TE76 937 aa17.49■□□□□ 0.39
VPS39-210ENST00000568357 UBE2OQ9C0C9 1292 aaKnown RBP17.49■□□□□ 0.39
VPS39-210ENST00000568357 ABCB11O95342 1321 aa17.48■□□□□ 0.39
VPS39-210ENST00000568357 PLXNA1Q9UIW2 1896 aa17.48■□□□□ 0.39
VPS39-210ENST00000568357 ZBTB5O15062 677 aa17.48■□□□□ 0.39
VPS39-210ENST00000568357 ADAMTS4O75173 837 aa17.48■□□□□ 0.39
VPS39-210ENST00000568357 ADCYAP1R1P41586 468 aa17.48■□□□□ 0.39
VPS39-210ENST00000568357 ALDH5A1P51649 535 aaPredicted RBP17.48■□□□□ 0.39
VPS39-210ENST00000568357 IRX5P78411 483 aaPredicted RBP17.48■□□□□ 0.39
VPS39-210ENST00000568357 NFXL1Q6ZNB6 911 aa17.48■□□□□ 0.39
VPS39-210ENST00000568357 EEPD1Q7L9B9 569 aa17.48■□□□□ 0.39
VPS39-210ENST00000568357 TMTC2Q8N394 836 aa17.48■□□□□ 0.39
VPS39-210ENST00000568357 KCNB2Q92953 911 aa17.48■□□□□ 0.39
VPS39-210ENST00000568357 PIGSQ96S52 555 aa17.48■□□□□ 0.39
VPS39-210ENST00000568357 AMNQ9BXJ7 453 aa17.48■□□□□ 0.39
VPS39-210ENST00000568357 PDGFCQ9NRA1 345 aa17.48■□□□□ 0.39
VPS39-210ENST00000568357 ADD3Q9UEY8 706 aaKnown RBP17.48■□□□□ 0.39
VPS39-210ENST00000568357 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.47■□□□□ 0.39
VPS39-210ENST00000568357 CCDC69A6NI79 296 aa17.47■□□□□ 0.39
VPS39-210ENST00000568357 KBTBD13C9JR72 458 aa17.47■□□□□ 0.39
VPS39-210ENST00000568357 DUSP11O75319 330 aaKnown RBP17.47■□□□□ 0.39
VPS39-210ENST00000568357 DDAH1O94760 285 aa17.47■□□□□ 0.39
VPS39-210ENST00000568357 ATN1P54259 1190 aaPredicted RBP17.47■□□□□ 0.39
VPS39-210ENST00000568357 TMEM63BQ5T3F8 832 aa17.47■□□□□ 0.39
VPS39-210ENST00000568357 TAPT1Q6NXT6 567 aa17.47■□□□□ 0.39
VPS39-210ENST00000568357 DHX32Q7L7V1 743 aaKnown RBP17.47■□□□□ 0.39
VPS39-210ENST00000568357 HOMER1Q86YM7 354 aa17.47■□□□□ 0.39
VPS39-210ENST00000568357 FERMT2Q96AC1 680 aa17.47■□□□□ 0.39
VPS39-210ENST00000568357 TCEANC2Q96MN5 208 aa17.47■□□□□ 0.39
VPS39-210ENST00000568357 FAM161BQ96MY7 647 aa17.47■□□□□ 0.39
VPS39-210ENST00000568357 MAP3K14Q99558 947 aa17.47■□□□□ 0.39
VPS39-210ENST00000568357 PRDM6Q9NQX0 595 aa17.47■□□□□ 0.39
VPS39-210ENST00000568357 MRPL11Q9Y3B7 192 aaKnown RBP17.47■□□□□ 0.39
VPS39-210ENST00000568357 SYNRGQ9UMZ2 1314 aa17.47■□□□□ 0.39
VPS39-210ENST00000568357 MYADML2A6NDP7 307 aa17.46■□□□□ 0.39
VPS39-210ENST00000568357 OPLAHO14841 1288 aa17.46■□□□□ 0.39
VPS39-210ENST00000568357 RXRAP19793 462 aa17.46■□□□□ 0.39
VPS39-210ENST00000568357 PTGS1P23219 599 aa17.46■□□□□ 0.39
VPS39-210ENST00000568357 HSPA4P34932 840 aa17.46■□□□□ 0.39
VPS39-210ENST00000568357 RNF180Q86T96 592 aa17.46■□□□□ 0.39
VPS39-210ENST00000568357 RAB11FIP4Q86YS3 637 aa17.46■□□□□ 0.39
VPS39-210ENST00000568357 FBXO16Q8IX29 292 aaPredicted RBP17.46■□□□□ 0.39
VPS39-210ENST00000568357 KLHDC9Q8NEP7 349 aa17.46■□□□□ 0.39
VPS39-210ENST00000568357 SYTL5Q8TDW5 730 aaPredicted RBP17.46■□□□□ 0.39
VPS39-210ENST00000568357 TAAR1Q96RJ0 339 aa17.46■□□□□ 0.39
VPS39-210ENST00000568357 COL20A1Q9P218 1284 aa17.46■□□□□ 0.39
VPS39-210ENST00000568357 PHF24Q9UPV7 400 aa17.46■□□□□ 0.39
VPS39-210ENST00000568357 PCDHA1Q9Y5I3 950 aa17.46■□□□□ 0.39
VPS39-210ENST00000568357 SMPD1P17405 629 aa17.45■□□□□ 0.38
VPS39-210ENST00000568357 TNFAIP2Q03169 654 aa17.45■□□□□ 0.38
VPS39-210ENST00000568357 CCSAPQ6IQ19 270 aaPredicted RBP17.45■□□□□ 0.38
VPS39-210ENST00000568357 SLC39A5Q6ZMH5 540 aa17.45■□□□□ 0.38
VPS39-210ENST00000568357 SGMS1Q86VZ5 419 aa17.45■□□□□ 0.38
VPS39-210ENST00000568357 MCF2L2Q86YR7 1114 aa17.45■□□□□ 0.38
VPS39-210ENST00000568357 DNERQ8NFT8 737 aa17.45■□□□□ 0.38
VPS39-210ENST00000568357 CTCFLQ8NI51 663 aaPredicted RBP17.45■□□□□ 0.38
VPS39-210ENST00000568357 PIBF1Q8WXW3 757 aa17.45■□□□□ 0.38
VPS39-210ENST00000568357 MAF1Q9H063 256 aa17.45■□□□□ 0.38
VPS39-210ENST00000568357 SNX14Q9Y5W7 946 aa17.45■□□□□ 0.38
VPS39-210ENST00000568357 SLC12A7Q9Y666 1083 aa17.45■□□□□ 0.38
VPS39-210ENST00000568357 LOC102724159A0A0B4J2E5 919 aa17.44■□□□□ 0.38
VPS39-210ENST00000568357 PNMA6FA0A0J9YX94 578 aa17.44■□□□□ 0.38
VPS39-210ENST00000568357 CTAGE5O15320 804 aa17.44■□□□□ 0.38
VPS39-210ENST00000568357 REC8O95072 547 aa17.44■□□□□ 0.38
VPS39-210ENST00000568357 PLEKHA8P1O95397 391 aa17.44■□□□□ 0.38
VPS39-210ENST00000568357 CPA1P15085 419 aa17.44■□□□□ 0.38
VPS39-210ENST00000568357 EDNRBP24530 442 aa17.44■□□□□ 0.38
VPS39-210ENST00000568357 KIF5BP33176 963 aa17.44■□□□□ 0.38
VPS39-210ENST00000568357 GJA9P57773 515 aa17.44■□□□□ 0.38
VPS39-210ENST00000568357 KRT32Q14532 448 aa17.44■□□□□ 0.38
VPS39-210ENST00000568357 PWP2Q15269 919 aaKnown RBP17.44■□□□□ 0.38
VPS39-210ENST00000568357 IQSEC1Q6DN90 963 aa17.44■□□□□ 0.38
VPS39-210ENST00000568357 CMTR1Q8N1G2 835 aaKnown RBP17.44■□□□□ 0.38
VPS39-210ENST00000568357 SRBD1Q8N5C6 995 aaKnown RBP17.44■□□□□ 0.38
VPS39-210ENST00000568357 UPF3AQ9H1J1 476 aaKnown RBP17.44■□□□□ 0.38
VPS39-210ENST00000568357 VTA1Q9NP79 307 aa17.44■□□□□ 0.38
VPS39-210ENST00000568357 BRPF3Q9ULD4 1205 aa17.44■□□□□ 0.38
VPS39-210ENST00000568357 GNEQ9Y223 722 aaKnown RBP17.44■□□□□ 0.38
VPS39-210ENST00000568357 FRMPD3Q5JV73 1810 aa17.43■□□□□ 0.38
VPS39-210ENST00000568357 CFBP00751 764 aa17.43■□□□□ 0.38
VPS39-210ENST00000568357 C6orf222P0C671 652 aaPredicted RBP17.43■□□□□ 0.38
VPS39-210ENST00000568357 SMARCA1P28370 1054 aa17.43■□□□□ 0.38
VPS39-210ENST00000568357 KCNA10Q16322 511 aa17.43■□□□□ 0.38
VPS39-210ENST00000568357 NOL8Q76FK4 1167 aaKnown RBP17.43■□□□□ 0.38
VPS39-210ENST00000568357 FANCBQ8NB91 859 aa17.43■□□□□ 0.38
VPS39-210ENST00000568357 LZTS2Q9BRK4 669 aa17.43■□□□□ 0.38
VPS39-210ENST00000568357 TSEN34Q9BSV6 310 aaKnown RBP17.43■□□□□ 0.38
VPS39-210ENST00000568357 SPZ1Q9BXG8 430 aa17.43■□□□□ 0.38
VPS39-210ENST00000568357 A0A1W2PQ45 241 aaPredicted RBP17.42■□□□□ 0.38
VPS39-210ENST00000568357 A0A1W2PQY0 241 aa17.42■□□□□ 0.38
VPS39-210ENST00000568357 RBM47A0AV96 593 aaKnown RBP17.42■□□□□ 0.38
VPS39-210ENST00000568357 CALM1P0DP23 149 aa17.42■□□□□ 0.38
VPS39-210ENST00000568357 CALM2P0DP24 149 aa17.42■□□□□ 0.38
VPS39-210ENST00000568357 CALM3P0DP25 149 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms