RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RNF207Q6ZRF8 634 aa17.39■□□□□ 0.37
CLN3-213ENST00000565047 EEPD1Q7L9B9 569 aa17.39■□□□□ 0.37
CLN3-213ENST00000565047 SLC43A3Q8NBI5 491 aa17.39■□□□□ 0.37
CLN3-213ENST00000565047 PCSK9Q8NBP7 692 aaKnown RBP17.39■□□□□ 0.37
CLN3-213ENST00000565047 NUP133Q8WUM0 1156 aa17.39■□□□□ 0.37
CLN3-213ENST00000565047 UBAC1Q9BSL1 405 aa17.39■□□□□ 0.37
CLN3-213ENST00000565047 LSG1Q9H089 658 aaKnown RBP17.39■□□□□ 0.37
CLN3-213ENST00000565047 STARD7Q9NQZ5 370 aa17.39■□□□□ 0.37
CLN3-213ENST00000565047 PTPDC1A2A3K4 754 aa17.38■□□□□ 0.37
CLN3-213ENST00000565047 OPLAHO14841 1288 aa17.38■□□□□ 0.37
CLN3-213ENST00000565047 CLTBP09497 229 aa17.38■□□□□ 0.37
CLN3-213ENST00000565047 PARP1P09874 1014 aaKnown RBP17.38■□□□□ 0.37
CLN3-213ENST00000565047 BEX3Q00994 111 aa17.38■□□□□ 0.37
CLN3-213ENST00000565047 TROAPQ12815 778 aa17.38■□□□□ 0.37
CLN3-213ENST00000565047 QRICH1Q2TAL8 776 aa17.38■□□□□ 0.37
CLN3-213ENST00000565047 GPR153Q6NV75 609 aa17.38■□□□□ 0.37
CLN3-213ENST00000565047 TLK2Q86UE8 772 aa17.38■□□□□ 0.37
CLN3-213ENST00000565047 MB21D2Q8IYB1 491 aaPredicted RBP17.38■□□□□ 0.37
CLN3-213ENST00000565047 IGDCC4Q8TDY8 1250 aa17.38■□□□□ 0.37
CLN3-213ENST00000565047 BADQ92934 168 aa17.38■□□□□ 0.37
CLN3-213ENST00000565047 COL20A1Q9P218 1284 aa17.38■□□□□ 0.37
CLN3-213ENST00000565047 ADD3Q9UEY8 706 aaKnown RBP17.38■□□□□ 0.37
CLN3-213ENST00000565047 GRIN2DO15399 1336 aa17.38■□□□□ 0.37
CLN3-213ENST00000565047 PPP1R11O60927 126 aaPredicted RBP17.37■□□□□ 0.37
CLN3-213ENST00000565047 CALML3P27482 149 aa17.37■□□□□ 0.37
CLN3-213ENST00000565047 GHRHRQ02643 423 aa17.37■□□□□ 0.37
CLN3-213ENST00000565047 USH1GQ495M9 461 aa17.37■□□□□ 0.37
CLN3-213ENST00000565047 DUSP28Q4G0W2 176 aa17.37■□□□□ 0.37
CLN3-213ENST00000565047 DNERQ8NFT8 737 aa17.37■□□□□ 0.37
CLN3-213ENST00000565047 GLT1D1Q96MS3 346 aa17.37■□□□□ 0.37
CLN3-213ENST00000565047 SPC25Q9HBM1 224 aa17.37■□□□□ 0.37
CLN3-213ENST00000565047 PRKAG2Q9UGJ0 569 aa17.37■□□□□ 0.37
CLN3-213ENST00000565047 RBM8AQ9Y5S9 174 aaKnown RBP17.37■□□□□ 0.37
CLN3-213ENST00000565047 KLRF2D3W0D1 207 aa17.36■□□□□ 0.37
CLN3-213ENST00000565047 ARVCFO00192 962 aa17.36■□□□□ 0.37
CLN3-213ENST00000565047 DYNC1LI2O43237 492 aaPredicted RBP17.36■□□□□ 0.37
CLN3-213ENST00000565047 PQBP1O60828 265 aaKnown RBP17.36■□□□□ 0.37
CLN3-213ENST00000565047 KIAA1211Q6ZU35 1233 aa17.36■□□□□ 0.37
CLN3-213ENST00000565047 CENPQQ7L2Z9 268 aaPredicted RBP17.36■□□□□ 0.37
CLN3-213ENST00000565047 NCOA7Q8NI08 942 aa17.36■□□□□ 0.37
CLN3-213ENST00000565047 SYTL5Q8TDW5 730 aaPredicted RBP17.36■□□□□ 0.37
CLN3-213ENST00000565047 LBHD1Q9BQE6 289 aaPredicted RBP17.36■□□□□ 0.37
CLN3-213ENST00000565047 ESYT1Q9BSJ8 1104 aa17.36■□□□□ 0.37
CLN3-213ENST00000565047 PRDM5Q9NQX1 630 aaPredicted RBP17.36■□□□□ 0.37
CLN3-213ENST00000565047 TBX21Q9UL17 535 aa17.36■□□□□ 0.37
CLN3-213ENST00000565047 ABCB11O95342 1321 aa17.36■□□□□ 0.37
CLN3-213ENST00000565047 CYTH3O43739 400 aa17.35■□□□□ 0.37
CLN3-213ENST00000565047 CD4P01730 458 aa17.35■□□□□ 0.37
CLN3-213ENST00000565047 EPHB4P54760 987 aa17.35■□□□□ 0.37
CLN3-213ENST00000565047 TRDNQ13061 729 aa17.35■□□□□ 0.37
CLN3-213ENST00000565047 GRM4Q14833 912 aa17.35■□□□□ 0.37
CLN3-213ENST00000565047 NECTIN1Q15223 517 aa17.35■□□□□ 0.37
CLN3-213ENST00000565047 SHHQ15465 462 aa17.35■□□□□ 0.37
CLN3-213ENST00000565047 FSCN1Q16658 493 aaKnown RBP17.35■□□□□ 0.37
CLN3-213ENST00000565047 BMP2KLQ5H9B9 411 aa17.35■□□□□ 0.37
CLN3-213ENST00000565047 C9orf50Q5SZB4 431 aa17.35■□□□□ 0.37
CLN3-213ENST00000565047 CHST3Q7LGC8 479 aa17.35■□□□□ 0.37
CLN3-213ENST00000565047 FAM126BQ8IXS8 530 aa17.35■□□□□ 0.37
CLN3-213ENST00000565047 WDR11Q9BZH6 1224 aa17.35■□□□□ 0.37
CLN3-213ENST00000565047 RIOX1Q9H6W3 641 aa17.35■□□□□ 0.37
CLN3-213ENST00000565047 VAT1LQ9HCJ6 419 aa17.35■□□□□ 0.37
CLN3-213ENST00000565047 COL6A3P12111 3177 aa17.34■□□□□ 0.37
CLN3-213ENST00000565047 A0A0U1RQG5 324 aaPredicted RBP17.34■□□□□ 0.37
CLN3-213ENST00000565047 IFIT3O14879 490 aaKnown RBP17.34■□□□□ 0.37
CLN3-213ENST00000565047 CXCL17Q6UXB2 119 aa17.34■□□□□ 0.37
CLN3-213ENST00000565047 FBXO11Q86XK2 927 aa17.34■□□□□ 0.37
CLN3-213ENST00000565047 TAAR1Q96RJ0 339 aa17.34■□□□□ 0.37
CLN3-213ENST00000565047 DCDC2CA8MYV0 355 aa17.33■□□□□ 0.36
CLN3-213ENST00000565047 CABYRO75952 493 aa17.33■□□□□ 0.36
CLN3-213ENST00000565047 HSD17B4P51659 736 aa17.33■□□□□ 0.36
CLN3-213ENST00000565047 CCDC62Q6P9F0 684 aa17.33■□□□□ 0.36
CLN3-213ENST00000565047 NOL8Q76FK4 1167 aaKnown RBP17.33■□□□□ 0.36
CLN3-213ENST00000565047 MTA3Q9BTC8 594 aa17.33■□□□□ 0.36
CLN3-213ENST00000565047 AP5M1Q9H0R1 490 aa17.33■□□□□ 0.36
CLN3-213ENST00000565047 LY9Q9HBG7 655 aa17.33■□□□□ 0.36
CLN3-213ENST00000565047 GPHNQ9NQX3 736 aaPredicted RBP17.33■□□□□ 0.36
CLN3-213ENST00000565047 TMEM39AQ9NV64 488 aa17.33■□□□□ 0.36
CLN3-213ENST00000565047 MRPL11Q9Y3B7 192 aaKnown RBP17.33■□□□□ 0.36
CLN3-213ENST00000565047 MROH7Q68CQ1 1323 aa17.32■□□□□ 0.36
CLN3-213ENST00000565047 SLC27A2O14975 620 aa17.32■□□□□ 0.36
CLN3-213ENST00000565047 ZBTB5O15062 677 aa17.32■□□□□ 0.36
CLN3-213ENST00000565047 ARIH2O95376 493 aa17.32■□□□□ 0.36
CLN3-213ENST00000565047 TIMP1P01033 207 aa17.32■□□□□ 0.36
CLN3-213ENST00000565047 WTAPQ15007 396 aa17.32■□□□□ 0.36
CLN3-213ENST00000565047 RALYLQ86SE5 291 aaKnown RBP17.32■□□□□ 0.36
CLN3-213ENST00000565047 MAP3K14Q99558 947 aa17.32■□□□□ 0.36
CLN3-213ENST00000565047 AMNQ9BXJ7 453 aa17.32■□□□□ 0.36
CLN3-213ENST00000565047 CDH23Q9H251 3354 aa17.31■□□□□ 0.36
CLN3-213ENST00000565047 PDE4DQ08499 809 aa17.31■□□□□ 0.36
CLN3-213ENST00000565047 ITGA7Q13683 1181 aa17.31■□□□□ 0.36
CLN3-213ENST00000565047 TMEM67Q5HYA8 995 aa17.31■□□□□ 0.36
CLN3-213ENST00000565047 MCF2L2Q86YR7 1114 aa17.31■□□□□ 0.36
CLN3-213ENST00000565047 A6NJR5 290 aa17.3■□□□□ 0.36
CLN3-213ENST00000565047 NKRFO15226 690 aaKnown RBP eCLIP17.3■□□□□ 0.36
CLN3-213ENST00000565047 RAG1P15918 1043 aa17.3■□□□□ 0.36
CLN3-213ENST00000565047 PURAQ00577 322 aaKnown RBP17.3■□□□□ 0.36
CLN3-213ENST00000565047 CREB3L3Q68CJ9 461 aa17.3■□□□□ 0.36
CLN3-213ENST00000565047 C16orf59Q7L2K0 433 aa17.3■□□□□ 0.36
CLN3-213ENST00000565047 NSUN6Q8TEA1 469 aaKnown RBP17.3■□□□□ 0.36
CLN3-213ENST00000565047 SCFD2Q8WU76 684 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms