RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	MICALCL	Q6ZW33	695 aa		12.36	□□□□□ -0.43
TCF4-222	ENST00000564228	FOXP4	Q8IVH2	680 aa	Predicted RBP	12.36	□□□□□ -0.43
TCF4-222	ENST00000564228	ZDHHC15	Q96MV8	337 aa		12.36	□□□□□ -0.43
TCF4-222	ENST00000564228	CTAGE1	Q96RT6	745 aa		12.36	□□□□□ -0.43
TCF4-222	ENST00000564228	USP40	Q9NVE5	1235 aa		12.36	□□□□□ -0.43
TCF4-222	ENST00000564228	SAP30BP	Q9UHR5	308 aa	Known RBP	12.36	□□□□□ -0.43
TCF4-222	ENST00000564228	CYP2D6	P10635	497 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	EPB41	P11171	864 aa	Known RBP	12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	SARS	P49591	514 aa	Known RBP	12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	EVX2	Q03828	476 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	FMR1	Q06787	632 aa	Known RBP eCLIP	12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	RBL2	Q08999	1139 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	RRP12	Q5JTH9	1297 aa	Known RBP	12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	AKNAD1	Q5T1N1	836 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	APOBEC3H	Q6NTF7	200 aa	Known RBP	12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	MFSD6	Q6ZSS7	791 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	EP400NL	Q6ZTU2	488 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	APTX	Q7Z2E3	356 aa	Known RBP	12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	OGFOD1	Q8N543	542 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	ARPP21	Q9UBL0	812 aa	Predicted RBP	12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	GGA2	Q9UJY4	613 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	SERPINA10	Q9UK55	444 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	KCNH3	Q9ULD8	1083 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	CAPN7	Q9Y6W3	813 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	GOLGA6B	A6NDN3	693 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228		B4E1Z4	1266 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	MEFV	O15553	781 aa	Predicted RBP	12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	OPA1	O60313	960 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	EIF6	P56537	245 aa	Known RBP	12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	HDLBP	Q00341	1268 aa	Known RBP	12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	AKAP17A	Q02040	695 aa	Known RBP	12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	TNIP1	Q15025	636 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	LONRF3	Q496Y0	759 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	WLS	Q5T9L3	541 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	OTUD7B	Q6GQQ9	843 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	CDC42EP5	Q6NZY7	148 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	MIEF2	Q96C03	454 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	SELENOO	Q9BVL4	669 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	RBM28	Q9NW13	759 aa	Known RBP	12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	HDAC9	Q9UKV0	1011 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	TACC3	Q9Y6A5	838 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	GJA3	Q9Y6H8	435 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	FLT1	P17948	1338 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	WDR19	Q8NEZ3	1342 aa		12.35	□□□□□ -0.43
TCF4-222	ENST00000564228	MARCKS	P29966	332 aa	Predicted RBP	12.34	□□□□□ -0.43
TCF4-222	ENST00000564228	MRPL12	P52815	198 aa	Known RBP	12.34	□□□□□ -0.43
TCF4-222	ENST00000564228	CACNB3	P54284	484 aa		12.34	□□□□□ -0.43
TCF4-222	ENST00000564228	GNGT1	P63211	74 aa		12.34	□□□□□ -0.43
TCF4-222	ENST00000564228	POSTN	Q15063	836 aa		12.34	□□□□□ -0.43
TCF4-222	ENST00000564228	CPLX2	Q6PUV4	134 aa	Known RBP	12.34	□□□□□ -0.43
TCF4-222	ENST00000564228	OTUD6B	Q8N6M0	293 aa		12.34	□□□□□ -0.43
TCF4-222	ENST00000564228	AGBL3	Q8NEM8	1001 aa		12.34	□□□□□ -0.43
TCF4-222	ENST00000564228	ZKSCAN4	Q969J2	545 aa	Predicted RBP	12.34	□□□□□ -0.43
TCF4-222	ENST00000564228	GML	Q99445	158 aa		12.34	□□□□□ -0.43
TCF4-222	ENST00000564228	MAP3K14	Q99558	947 aa		12.34	□□□□□ -0.43
TCF4-222	ENST00000564228	JPH2	Q9BR39	696 aa	Predicted RBP	12.34	□□□□□ -0.43
TCF4-222	ENST00000564228	MRI	Q9BWK5	157 aa		12.34	□□□□□ -0.43
TCF4-222	ENST00000564228	VEZT	Q9HBM0	779 aa		12.34	□□□□□ -0.43
TCF4-222	ENST00000564228		A0A0U1RQJ8	604 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	SRRM3	A6NNA2	597 aa	Predicted RBP	12.33	□□□□□ -0.44
TCF4-222	ENST00000564228		H0YHG0	523 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	FZD9	O00144	591 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	SOCS7	O14512	581 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	GCFC2	P16383	781 aa	Known RBP	12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	LMNB1	P20700	586 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	SMTN	P53814	917 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	DRP2	Q13474	957 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	TRIM14	Q14142	442 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	FILIP1L	Q4L180	1135 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	LRCH2	Q5VUJ6	765 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	NCAPH2	Q6IBW4	605 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	KANK3	Q6NY19	840 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	CYP26C1	Q6V0L0	522 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	CCNI2	Q6ZMN8	369 aa	Predicted RBP	12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	MB21D2	Q8IYB1	491 aa	Predicted RBP	12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	NKX2-3	Q8TAU0	364 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	AEN	Q8WTP8	325 aa	Known RBP	12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	ATRIP	Q8WXE1	791 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	RNF41	Q9H4P4	317 aa	Predicted RBP	12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	ADD3	Q9UEY8	706 aa	Known RBP	12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	ANAPC4	Q9UJX5	808 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	FAM184B	Q9ULE4	1060 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	ZNF541	Q9H0D2	1346 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	PRC1	O43663	620 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	PRDM1	O75626	825 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	CLSTN1	O94985	981 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	NF2	P35240	595 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	SBK1	Q52WX2	424 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	SPATA1	Q5VX52	437 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	PAPD7	Q5XG87	772 aa	Known RBP	12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	IQCE	Q6IPM2	695 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	ZNF662	Q6ZS27	426 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	MAGEC3	Q8TD91	643 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	PRMT6	Q96LA8	375 aa	Predicted RBP	12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	KRT23	Q9C075	422 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	TDRD3	Q9H7E2	651 aa	Known RBP	12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	CNNM2	Q9H8M5	875 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	DDX4	Q9NQI0	724 aa	Known RBP	12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	HPS5	Q9UPZ3	1129 aa		12.33	□□□□□ -0.44
TCF4-222	ENST00000564228	NFIA	Q12857	509 aa		12.32	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms