RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 NFIBO00712 420 aa14.69□□□□□ -0.06
SNX1-209ENST00000559961 KPNA6O60684 536 aa14.69□□□□□ -0.06
SNX1-209ENST00000559961 SUPT20HL2P0C7V6 817 aa14.69□□□□□ -0.06
SNX1-209ENST00000559961 GOLGA8HP0CJ92 632 aa14.69□□□□□ -0.06
SNX1-209ENST00000559961 CDK7P50613 346 aa14.69□□□□□ -0.06
SNX1-209ENST00000559961 NKX3-2P78367 333 aa14.69□□□□□ -0.06
SNX1-209ENST00000559961 PPP2R5BQ15173 497 aa14.69□□□□□ -0.06
SNX1-209ENST00000559961 DUSP28Q4G0W2 176 aa14.69□□□□□ -0.06
SNX1-209ENST00000559961 IFIT1BQ5T764 474 aaKnown RBP14.69□□□□□ -0.06
SNX1-209ENST00000559961 PSRC1Q6PGN9 363 aaPredicted RBP14.69□□□□□ -0.06
SNX1-209ENST00000559961 RASGRP2Q7LDG7 609 aa14.69□□□□□ -0.06
SNX1-209ENST00000559961 RGS22Q8NE09 1264 aa14.69□□□□□ -0.06
SNX1-209ENST00000559961 SCFD2Q8WU76 684 aa14.69□□□□□ -0.06
SNX1-209ENST00000559961 UBA5Q9GZZ9 404 aa14.69□□□□□ -0.06
SNX1-209ENST00000559961 KATNBL1Q9H079 304 aa14.69□□□□□ -0.06
SNX1-209ENST00000559961 PDGFCQ9NRA1 345 aa14.69□□□□□ -0.06
SNX1-209ENST00000559961 GNEQ9Y223 722 aaKnown RBP14.69□□□□□ -0.06
SNX1-209ENST00000559961 MRPL11Q9Y3B7 192 aaKnown RBP14.69□□□□□ -0.06
SNX1-209ENST00000559961 PARP14Q460N5 1801 aa14.69□□□□□ -0.06
SNX1-209ENST00000559961 ABCB11O95342 1321 aa14.68□□□□□ -0.06
SNX1-209ENST00000559961 NEDD4P46934 1319 aa14.68□□□□□ -0.06
SNX1-209ENST00000559961 MYL3P08590 195 aa14.68□□□□□ -0.06
SNX1-209ENST00000559961 SNHG28P0DPA3 235 aa14.68□□□□□ -0.06
SNX1-209ENST00000559961 RPS6P62753 249 aaKnown RBP14.68□□□□□ -0.06
SNX1-209ENST00000559961 SART3Q15020 963 aaKnown RBP14.68□□□□□ -0.06
SNX1-209ENST00000559961 TAPT1Q6NXT6 567 aa14.68□□□□□ -0.06
SNX1-209ENST00000559961 RPUSD2Q8IZ73 545 aaKnown RBP14.68□□□□□ -0.06
SNX1-209ENST00000559961 OR6J1Q8NGC5 347 aa14.68□□□□□ -0.06
SNX1-209ENST00000559961 MORC4Q8TE76 937 aa14.68□□□□□ -0.06
SNX1-209ENST00000559961 PPP1R12CQ9BZL4 782 aa14.68□□□□□ -0.06
SNX1-209ENST00000559961 VAT1LQ9HCJ6 419 aa14.68□□□□□ -0.06
SNX1-209ENST00000559961 ZSWIM5Q9P217 1185 aa14.68□□□□□ -0.06
SNX1-209ENST00000559961 TBX21Q9UL17 535 aa14.68□□□□□ -0.06
SNX1-209ENST00000559961 U3KPZ7 1027 aaPredicted RBP14.68□□□□□ -0.06
SNX1-209ENST00000559961 FRMPD3Q5JV73 1810 aa14.68□□□□□ -0.06
SNX1-209ENST00000559961 TMEM265A0A087WTH1 108 aa14.67□□□□□ -0.06
SNX1-209ENST00000559961 DLL1O00548 723 aa14.67□□□□□ -0.06
SNX1-209ENST00000559961 ADCY6O43306 1168 aa14.67□□□□□ -0.06
SNX1-209ENST00000559961 TTLL4Q14679 1199 aa14.67□□□□□ -0.06
SNX1-209ENST00000559961 CDC37Q16543 378 aaPredicted RBP14.67□□□□□ -0.06
SNX1-209ENST00000559961 RALYLQ86SE5 291 aaKnown RBP14.67□□□□□ -0.06
SNX1-209ENST00000559961 FBXO11Q86XK2 927 aa14.67□□□□□ -0.06
SNX1-209ENST00000559961 NSUN6Q8TEA1 469 aaKnown RBP14.67□□□□□ -0.06
SNX1-209ENST00000559961 ANKS1AQ92625 1134 aa14.67□□□□□ -0.06
SNX1-209ENST00000559961 SEMA6BQ9H3T3 888 aa14.67□□□□□ -0.06
SNX1-209ENST00000559961 HIPK3Q9H422 1215 aa14.67□□□□□ -0.06
SNX1-209ENST00000559961 PLXNA1Q9UIW2 1896 aa14.67□□□□□ -0.06
SNX1-209ENST00000559961 RANBP2P49792 3224 aaKnown RBP14.67□□□□□ -0.06
SNX1-209ENST00000559961 TNKSO95271 1327 aa14.66□□□□□ -0.06
SNX1-209ENST00000559961 TXNP10599 105 aaKnown RBP14.66□□□□□ -0.06
SNX1-209ENST00000559961 ITGB8P26012 769 aa14.66□□□□□ -0.06
SNX1-209ENST00000559961 IRX5P78411 483 aaPredicted RBP14.66□□□□□ -0.06
SNX1-209ENST00000559961 FAM47CQ5HY64 1035 aa14.66□□□□□ -0.06
SNX1-209ENST00000559961 TTC22Q5TAA0 569 aa14.66□□□□□ -0.06
SNX1-209ENST00000559961 SLC30A10Q6XR72 485 aa14.66□□□□□ -0.06
SNX1-209ENST00000559961 FAM126BQ8IXS8 530 aa14.66□□□□□ -0.06
SNX1-209ENST00000559961 ADGRF4Q8IZF3 695 aa14.66□□□□□ -0.06
SNX1-209ENST00000559961 CLEC4DQ8WXI8 215 aa14.66□□□□□ -0.06
SNX1-209ENST00000559961 PURBQ96QR8 312 aaKnown RBP14.66□□□□□ -0.06
SNX1-209ENST00000559961 MTG1Q9BT17 334 aaPredicted RBP14.66□□□□□ -0.06
SNX1-209ENST00000559961 NOD1Q9Y239 953 aa14.66□□□□□ -0.06
SNX1-209ENST00000559961 SMCHD1A6NHR9 2005 aa14.65□□□□□ -0.06
SNX1-209ENST00000559961 FGBP02675 491 aa14.65□□□□□ -0.06
SNX1-209ENST00000559961 STXBP2Q15833 593 aa14.65□□□□□ -0.06
SNX1-209ENST00000559961 ARHGEF16Q5VV41 709 aa14.65□□□□□ -0.06
SNX1-209ENST00000559961 ENAHQ8N8S7 591 aaPredicted RBP14.65□□□□□ -0.06
SNX1-209ENST00000559961 RETREG2Q8NC44 543 aa14.65□□□□□ -0.06
SNX1-209ENST00000559961 IWS1Q96ST2 819 aa14.65□□□□□ -0.06
SNX1-209ENST00000559961 AMNQ9BXJ7 453 aa14.65□□□□□ -0.06
SNX1-209ENST00000559961 IL23AQ9NPF7 189 aa14.65□□□□□ -0.06
SNX1-209ENST00000559961 MSRAQ9UJ68 235 aa14.65□□□□□ -0.06
SNX1-209ENST00000559961 RBM47A0AV96 593 aaKnown RBP14.64□□□□□ -0.07
SNX1-209ENST00000559961 IFIT3O14879 490 aaKnown RBP14.64□□□□□ -0.07
SNX1-209ENST00000559961 CTAGE5O15320 804 aa14.64□□□□□ -0.07
SNX1-209ENST00000559961 CD4P01730 458 aa14.64□□□□□ -0.07
SNX1-209ENST00000559961 CSF2RAP15509 400 aa14.64□□□□□ -0.07
SNX1-209ENST00000559961 CYP2C18P33260 490 aa14.64□□□□□ -0.07
SNX1-209ENST00000559961 EPHB4P54760 987 aa14.64□□□□□ -0.07
SNX1-209ENST00000559961 CHMP4BP1P59074 171 aa14.64□□□□□ -0.07
SNX1-209ENST00000559961 SLC43A3Q8NBI5 491 aa14.64□□□□□ -0.07
SNX1-209ENST00000559961 RMDN3Q96TC7 470 aa14.64□□□□□ -0.07
SNX1-209ENST00000559961 CDX2Q99626 313 aaPredicted RBP14.64□□□□□ -0.07
SNX1-209ENST00000559961 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.64□□□□□ -0.074e-8■■■□□ 14.7
SNX1-209ENST00000559961 DDX49Q9Y6V7 483 aaKnown RBP14.64□□□□□ -0.07
SNX1-209ENST00000559961 ASTN1O14525 1302 aa14.64□□□□□ -0.07
SNX1-209ENST00000559961 ACRP10323 421 aa14.63□□□□□ -0.07
SNX1-209ENST00000559961 FOSL2P15408 326 aa14.63□□□□□ -0.07
SNX1-209ENST00000559961 PSMC6P62333 389 aa14.63□□□□□ -0.07
SNX1-209ENST00000559961 RAB30Q15771 203 aa14.63□□□□□ -0.07
SNX1-209ENST00000559961 QRICH1Q2TAL8 776 aa14.63□□□□□ -0.07
SNX1-209ENST00000559961 SEPT14Q6ZU15 432 aa14.63□□□□□ -0.07
SNX1-209ENST00000559961 ZNF365Q70YC5 407 aa14.63□□□□□ -0.07
SNX1-209ENST00000559961 NCOA7Q8NI08 942 aa14.63□□□□□ -0.07
SNX1-209ENST00000559961 TIFAQ96CG3 184 aa14.63□□□□□ -0.07
SNX1-209ENST00000559961 GUCD1Q96NT3 240 aa14.63□□□□□ -0.07
SNX1-209ENST00000559961 TRPV6Q9H1D0 765 aa14.63□□□□□ -0.07
SNX1-209ENST00000559961 KLRF2D3W0D1 207 aa14.62□□□□□ -0.07
SNX1-209ENST00000559961 CFBP00751 764 aa14.62□□□□□ -0.07
SNX1-209ENST00000559961 GH1P01241 217 aa14.62□□□□□ -0.07
SNX1-209ENST00000559961 ACTN1P12814 892 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms