RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 SNX17Q15036 470 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 PWP2Q15269 919 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 TSGA10IPQ3SY00 556 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 CASC1Q6TDU7 716 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 SLC39A5Q6ZMH5 540 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 RNF180Q86T96 592 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 FBXO11Q86XK2 927 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 RASEFQ8IZ41 740 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 TSEN34Q9BSV6 310 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 MAF1Q9H063 256 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 UPF3AQ9H1J1 476 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 PDGFCQ9NRA1 345 aa11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 GNEQ9Y223 722 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-206ENST00000553437 LAMA3Q16787 3333 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 OPLAHO14841 1288 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 ZBTB5O15062 677 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 DHX16O60231 1041 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 SMPD1P17405 629 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 CST5P28325 142 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 GJA9P57773 515 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 RTP1P59025 263 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 TMEM63BQ5T3F8 832 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 C1orf53Q5VUE5 145 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 ERICH6BQ5W0A0 696 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 CATIPQ7Z7H3 387 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 FBXO16Q8IX29 292 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 SYTL5Q8TDW5 730 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 FERMT2Q96AC1 680 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 TMEM87BQ96K49 555 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 GDF15Q99988 308 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 VTA1Q9NP79 307 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 PPP4R2Q9NY27 417 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 COL20A1Q9P218 1284 aa11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 RBM27Q9P2N5 1060 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 ADD3Q9UEY8 706 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-206ENST00000553437 ZNFX1Q9P2E3 1918 aaKnown RBP11.96□□□□□ -0.5
CCDC88C-206ENST00000553437 A0A1W2PQ45 241 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 A0A1W2PQY0 241 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 DDAH1O94760 285 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 SYN1P17600 705 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 PTGS1P23219 599 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 LIFRP42702 1097 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 ACLYP53396 1101 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 EXOSC10Q01780 885 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 GHRHRQ02643 423 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 TNFAIP2Q03169 654 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 KCNA10Q16322 511 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 RNF20Q5VTR2 975 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 IQSEC1Q6DN90 963 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 EEPD1Q7L9B9 569 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 ZNF654Q8IZM8 581 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 TMTC2Q8N394 836 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 DNERQ8NFT8 737 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 KCNB2Q92953 911 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 PIGSQ96S52 555 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 MAP3K14Q99558 947 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 MYL10Q9BUA6 226 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 AMNQ9BXJ7 453 aa11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 MRPL11Q9Y3B7 192 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-206ENST00000553437 RBM47A0AV96 593 aaKnown RBP11.94□□□□□ -0.5
CCDC88C-206ENST00000553437 MOXD2PA6NHM9 499 aa11.94□□□□□ -0.5
CCDC88C-206ENST00000553437 C6orf222P0C671 652 aaPredicted RBP11.94□□□□□ -0.5
CCDC88C-206ENST00000553437 HSD17B4P51659 736 aa11.94□□□□□ -0.5
CCDC88C-206ENST00000553437 ADCK5Q3MIX3 580 aa11.94□□□□□ -0.5
CCDC88C-206ENST00000553437 TRIM60Q495X7 471 aa11.94□□□□□ -0.5
CCDC88C-206ENST00000553437 MCF2L2Q86YR7 1114 aa11.94□□□□□ -0.5
CCDC88C-206ENST00000553437 NUP133Q8WUM0 1156 aa11.94□□□□□ -0.5
CCDC88C-206ENST00000553437 NEK1Q96PY6 1258 aa11.94□□□□□ -0.5
CCDC88C-206ENST00000553437 TAAR1Q96RJ0 339 aa11.94□□□□□ -0.5
CCDC88C-206ENST00000553437 LRRC2Q9BYS8 371 aa11.94□□□□□ -0.5
CCDC88C-206ENST00000553437 PCDHA1Q9Y5I3 950 aa11.94□□□□□ -0.5
CCDC88C-206ENST00000553437 PLXNA1Q9UIW2 1896 aa11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 PNMA6FA0A0J9YX94 578 aa11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 DYNC1LI2O43237 492 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 ASGR1P07306 291 aa11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 SMARCA1P28370 1054 aa11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 BMP8BP34820 402 aa11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 MAGEA10P43363 369 aaPredicted RBP11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 DUSP28Q4G0W2 176 aa11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 GNASQ5JWF2 1037 aa11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 SGMS1Q86VZ5 419 aa11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 HOMER1Q86YM7 354 aa11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 SPC25Q9HBM1 224 aa11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 ATP11BQ9Y2G3 1177 aa11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 Q9Y3F1 56 aa11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 FRMPD3Q5JV73 1810 aa11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 SMCHD1A6NHR9 2005 aa11.93□□□□□ -0.5
CCDC88C-206ENST00000553437 CCDC69A6NI79 296 aa11.92□□□□□ -0.5
CCDC88C-206ENST00000553437 GABBR2O75899 941 aa11.92□□□□□ -0.5
CCDC88C-206ENST00000553437 PLEKHA8P1O95397 391 aa11.92□□□□□ -0.5
CCDC88C-206ENST00000553437 RXRAP19793 462 aa11.92□□□□□ -0.5
CCDC88C-206ENST00000553437 KCNA4P22459 653 aa11.92□□□□□ -0.5
CCDC88C-206ENST00000553437 KIF5BP33176 963 aa11.92□□□□□ -0.5
CCDC88C-206ENST00000553437 HSPA4P34932 840 aa11.92□□□□□ -0.5
CCDC88C-206ENST00000553437 BEX3Q00994 111 aa11.92□□□□□ -0.5
CCDC88C-206ENST00000553437 TLE2Q04725 743 aa11.92□□□□□ -0.5
CCDC88C-206ENST00000553437 PDE4DQ08499 809 aa11.92□□□□□ -0.5
CCDC88C-206ENST00000553437 NFXL1Q6ZNB6 911 aa11.92□□□□□ -0.5
CCDC88C-206ENST00000553437 NOL8Q76FK4 1167 aaKnown RBP11.92□□□□□ -0.5
CCDC88C-206ENST00000553437 DHX32Q7L7V1 743 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms