RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 MFSD5Q6N075 450 aa14.93□□□□□ -0.02
LINC00643-202ENST00000553426 TAPT1Q6NXT6 567 aa14.93□□□□□ -0.02
LINC00643-202ENST00000553426 CXCL17Q6UXB2 119 aa14.93□□□□□ -0.02
LINC00643-202ENST00000553426 TMEM199Q8N511 208 aa14.93□□□□□ -0.02
LINC00643-202ENST00000553426 PNMA1Q8ND90 353 aa14.93□□□□□ -0.02
LINC00643-202ENST00000553426 MORC4Q8TE76 937 aa14.93□□□□□ -0.02
LINC00643-202ENST00000553426 ZSCAN10Q96SZ4 725 aaPredicted RBP14.93□□□□□ -0.02
LINC00643-202ENST00000553426 UBAC1Q9BSL1 405 aa14.93□□□□□ -0.02
LINC00643-202ENST00000553426 PDGFCQ9NRA1 345 aa14.93□□□□□ -0.02
LINC00643-202ENST00000553426 TBX21Q9UL17 535 aa14.93□□□□□ -0.02
LINC00643-202ENST00000553426 SUPT16HQ9Y5B9 1047 aaKnown RBP14.93□□□□□ -0.02
LINC00643-202ENST00000553426 CDH23Q9H251 3354 aa14.92□□□□□ -0.02
LINC00643-202ENST00000553426 B4E1Z4 1266 aa14.92□□□□□ -0.02
LINC00643-202ENST00000553426 CTAGE5O15320 804 aa14.92□□□□□ -0.02
LINC00643-202ENST00000553426 DHX16O60231 1041 aaKnown RBP14.92□□□□□ -0.02
LINC00643-202ENST00000553426 GOLGA8HP0CJ92 632 aa14.92□□□□□ -0.02
LINC00643-202ENST00000553426 DUSP28Q4G0W2 176 aa14.92□□□□□ -0.02
LINC00643-202ENST00000553426 DNERQ8NFT8 737 aa14.92□□□□□ -0.02
LINC00643-202ENST00000553426 FAM161BQ96MY7 647 aa14.92□□□□□ -0.02
LINC00643-202ENST00000553426 GUCD1Q96NT3 240 aa14.92□□□□□ -0.02
LINC00643-202ENST00000553426 PURBQ96QR8 312 aaKnown RBP14.92□□□□□ -0.02
LINC00643-202ENST00000553426 WDR11Q9BZH6 1224 aa14.92□□□□□ -0.02
LINC00643-202ENST00000553426 ASTN1O14525 1302 aa14.92□□□□□ -0.02
LINC00643-202ENST00000553426 PARP1P09874 1014 aaKnown RBP14.91□□□□□ -0.02
LINC00643-202ENST00000553426 CPT1AP50416 773 aa14.91□□□□□ -0.02
LINC00643-202ENST00000553426 RPS6P62753 249 aaKnown RBP14.91□□□□□ -0.02
LINC00643-202ENST00000553426 TRDNQ13061 729 aa14.91□□□□□ -0.02
LINC00643-202ENST00000553426 ITGA7Q13683 1181 aa14.91□□□□□ -0.02
LINC00643-202ENST00000553426 USH1GQ495M9 461 aa14.91□□□□□ -0.02
LINC00643-202ENST00000553426 ASPRV1Q53RT3 343 aa14.91□□□□□ -0.02
LINC00643-202ENST00000553426 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.91□□□□□ -0.02
LINC00643-202ENST00000553426 FAM126BQ8IXS8 530 aa14.91□□□□□ -0.02
LINC00643-202ENST00000553426 RUFY2Q8WXA3 655 aa14.91□□□□□ -0.02
LINC00643-202ENST00000553426 CLEC4DQ8WXI8 215 aa14.91□□□□□ -0.02
LINC00643-202ENST00000553426 ANKS1AQ92625 1134 aa14.91□□□□□ -0.02
LINC00643-202ENST00000553426 MAF1Q9H063 256 aa14.91□□□□□ -0.02
LINC00643-202ENST00000553426 GPHNQ9NQX3 736 aaPredicted RBP14.91□□□□□ -0.02
LINC00643-202ENST00000553426 POLR3EQ9NVU0 708 aa14.91□□□□□ -0.02
LINC00643-202ENST00000553426 ZSWIM5Q9P217 1185 aa14.91□□□□□ -0.02
LINC00643-202ENST00000553426 DDX49Q9Y6V7 483 aaKnown RBP14.91□□□□□ -0.02
LINC00643-202ENST00000553426 RAD50Q92878 1312 aa14.91□□□□□ -0.02
LINC00643-202ENST00000553426 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.9□□□□□ -0.02
LINC00643-202ENST00000553426 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.9□□□□□ -0.02
LINC00643-202ENST00000553426 NKRFO15226 690 aaKnown RBP eCLIP14.9□□□□□ -0.02
LINC00643-202ENST00000553426 EPHB4P54760 987 aa14.9□□□□□ -0.02
LINC00643-202ENST00000553426 PPP2R5BQ15173 497 aa14.9□□□□□ -0.02
LINC00643-202ENST00000553426 CDC37Q16543 378 aaPredicted RBP14.9□□□□□ -0.02
LINC00643-202ENST00000553426 IFIT1BQ5T764 474 aaKnown RBP14.9□□□□□ -0.02
LINC00643-202ENST00000553426 SLC30A10Q6XR72 485 aa14.9□□□□□ -0.02
LINC00643-202ENST00000553426 MCF2L2Q86YR7 1114 aa14.9□□□□□ -0.02
LINC00643-202ENST00000553426 RGS22Q8NE09 1264 aa14.9□□□□□ -0.02
LINC00643-202ENST00000553426 SCFD2Q8WU76 684 aa14.9□□□□□ -0.02
LINC00643-202ENST00000553426 PPP1R12CQ9BZL4 782 aa14.9□□□□□ -0.02
LINC00643-202ENST00000553426 UBA5Q9GZZ9 404 aa14.9□□□□□ -0.02
LINC00643-202ENST00000553426 TNKSO95271 1327 aa14.9□□□□□ -0.02
LINC00643-202ENST00000553426 TMEM265A0A087WTH1 108 aa14.89□□□□□ -0.03
LINC00643-202ENST00000553426 TTC22Q5TAA0 569 aa14.89□□□□□ -0.03
LINC00643-202ENST00000553426 PSRC1Q6PGN9 363 aaPredicted RBP14.89□□□□□ -0.03
LINC00643-202ENST00000553426 ENAHQ8N8S7 591 aaPredicted RBP14.89□□□□□ -0.03
LINC00643-202ENST00000553426 SLC43A3Q8NBI5 491 aa14.89□□□□□ -0.03
LINC00643-202ENST00000553426 MTIF3Q9H2K0 278 aaKnown RBP14.89□□□□□ -0.03
LINC00643-202ENST00000553426 SEMA6BQ9H3T3 888 aa14.89□□□□□ -0.03
LINC00643-202ENST00000553426 ABCB11O95342 1321 aa14.89□□□□□ -0.03
LINC00643-202ENST00000553426 RBM47A0AV96 593 aaKnown RBP14.88□□□□□ -0.03
LINC00643-202ENST00000553426 CD4P01730 458 aa14.88□□□□□ -0.03
LINC00643-202ENST00000553426 TTLL4Q14679 1199 aa14.88□□□□□ -0.03
LINC00643-202ENST00000553426 ADGRF4Q8IZF3 695 aa14.88□□□□□ -0.03
LINC00643-202ENST00000553426 OR6J1Q8NGC5 347 aa14.88□□□□□ -0.03
LINC00643-202ENST00000553426 CPVLQ9H3G5 476 aa14.88□□□□□ -0.03
LINC00643-202ENST00000553426 HIPK3Q9H422 1215 aa14.88□□□□□ -0.03
LINC00643-202ENST00000553426 VAT1LQ9HCJ6 419 aa14.88□□□□□ -0.03
LINC00643-202ENST00000553426 MRPL11Q9Y3B7 192 aaKnown RBP14.88□□□□□ -0.03
LINC00643-202ENST00000553426 U3KPZ7 1027 aaPredicted RBP14.88□□□□□ -0.03
LINC00643-202ENST00000553426 PRUNE2Q8WUY3 3088 aa14.87□□□□□ -0.03
LINC00643-202ENST00000553426 ERICH2A1L162 156 aa14.87□□□□□ -0.03
LINC00643-202ENST00000553426 KPNA6O60684 536 aa14.87□□□□□ -0.03
LINC00643-202ENST00000553426 MYL3P08590 195 aa14.87□□□□□ -0.03
LINC00643-202ENST00000553426 SUPT20HL2P0C7V6 817 aa14.87□□□□□ -0.03
LINC00643-202ENST00000553426 CSF2RAP15509 400 aa14.87□□□□□ -0.03
LINC00643-202ENST00000553426 FBXO11Q86XK2 927 aa14.87□□□□□ -0.03
LINC00643-202ENST00000553426 NSUN6Q8TEA1 469 aaKnown RBP14.87□□□□□ -0.03
LINC00643-202ENST00000553426 CDX2Q99626 313 aaPredicted RBP14.87□□□□□ -0.03
LINC00643-202ENST00000553426 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.87□□□□□ -0.03
LINC00643-202ENST00000553426 MTG1Q9BT17 334 aaPredicted RBP14.87□□□□□ -0.03
LINC00643-202ENST00000553426 LAMA4Q16363 1823 aa14.87□□□□□ -0.03
LINC00643-202ENST00000553426 TXNP10599 105 aaKnown RBP14.86□□□□□ -0.03
LINC00643-202ENST00000553426 PTGS1P23219 599 aa14.86□□□□□ -0.03
LINC00643-202ENST00000553426 EDNRBP24530 442 aa14.86□□□□□ -0.03
LINC00643-202ENST00000553426 CYP2C18P33260 490 aa14.86□□□□□ -0.03
LINC00643-202ENST00000553426 PSMC6P62333 389 aa14.86□□□□□ -0.03
LINC00643-202ENST00000553426 SART3Q15020 963 aaKnown RBP14.86□□□□□ -0.03
LINC00643-202ENST00000553426 TMEM240Q5SV17 173 aa14.86□□□□□ -0.03
LINC00643-202ENST00000553426 TMEM63BQ5T3F8 832 aa14.86□□□□□ -0.03
LINC00643-202ENST00000553426 RALYLQ86SE5 291 aaKnown RBP14.86□□□□□ -0.03
LINC00643-202ENST00000553426 TRPV6Q9H1D0 765 aa14.86□□□□□ -0.03
LINC00643-202ENST00000553426 IL23AQ9NPF7 189 aa14.86□□□□□ -0.03
LINC00643-202ENST00000553426 LRRC37A2A6NM11 1700 aa14.86□□□□□ -0.03
LINC00643-202ENST00000553426 B4GALT4O60513 344 aa14.85□□□□□ -0.03
LINC00643-202ENST00000553426 FGBP02675 491 aa14.85□□□□□ -0.03
LINC00643-202ENST00000553426 ACRP10323 421 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms