RNA–Protein interactions for RNA: ENST00000548877.1

CDX2-202, Transcript of caudal type homeobox 2, humanhuman

TSL 3

Gene CDX2, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-202ENST00000548877 FBXO16Q8IX29 292 aaPredicted RBP16.09■□□□□ 0.17
CDX2-202ENST00000548877 STK11IPQ8N1F8 1099 aa16.09■□□□□ 0.17
CDX2-202ENST00000548877 TRMT13Q9NUP7 481 aaKnown RBP16.09■□□□□ 0.17
CDX2-202ENST00000548877 BRWD1Q9NSI6 2320 aa16.08■□□□□ 0.17
CDX2-202ENST00000548877 PIEZO1Q92508 2521 aa16.08■□□□□ 0.17
CDX2-202ENST00000548877 PATL2C9JE40 543 aaKnown RBP16.08■□□□□ 0.16
CDX2-202ENST00000548877 CYP2C9P11712 490 aa16.08■□□□□ 0.16
CDX2-202ENST00000548877 ALAS1P13196 640 aa16.08■□□□□ 0.16
CDX2-202ENST00000548877 SLC1A4P43007 532 aa16.08■□□□□ 0.16
CDX2-202ENST00000548877 MUM1L1Q5H9M0 696 aa16.08■□□□□ 0.16
CDX2-202ENST00000548877 TMEM31Q5JXX7 168 aa16.08■□□□□ 0.16
CDX2-202ENST00000548877 PPP4R3BQ5MIZ7 849 aa16.08■□□□□ 0.16
CDX2-202ENST00000548877 RCSD1Q6JBY9 416 aa16.08■□□□□ 0.16
CDX2-202ENST00000548877 KIAA1211Q6ZU35 1233 aa16.08■□□□□ 0.16
CDX2-202ENST00000548877 LRRCC1Q9C099 1032 aa16.08■□□□□ 0.16
CDX2-202ENST00000548877 ECHDC1Q9NTX5 307 aa16.08■□□□□ 0.16
CDX2-202ENST00000548877 LMCD1Q9NZU5 365 aa16.08■□□□□ 0.16
CDX2-202ENST00000548877 DDX49Q9Y6V7 483 aaKnown RBP16.08■□□□□ 0.16
CDX2-202ENST00000548877 PTPRSQ13332 1948 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 RNF113AO15541 343 aaKnown RBP16.07■□□□□ 0.16
CDX2-202ENST00000548877 ARHGEF15O94989 841 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 IQCF3P0C7M6 154 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 TSPY3P0CV98 308 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 TSPY8P0CW00 308 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 NOVP48745 357 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 TDO2P48775 406 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 CPT1AP50416 773 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 PTPN11Q06124 597 aaPredicted RBP16.07■□□□□ 0.16
CDX2-202ENST00000548877 PDE4BQ07343 736 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 NFRKBQ6P4R8 1299 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 EEPD1Q7L9B9 569 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 HERC6Q8IVU3 1022 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 IFNL3Q8IZI9 196 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 HLA-CQ95604 372 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 MTG1Q9BT17 334 aaPredicted RBP16.07■□□□□ 0.16
CDX2-202ENST00000548877 C11orf16Q9NQ32 467 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 PRR12Q9ULL5 1215 aa16.07■□□□□ 0.16
CDX2-202ENST00000548877 KIF28PB7ZC32 967 aa16.06■□□□□ 0.16
CDX2-202ENST00000548877 KPNA6O60684 536 aa16.06■□□□□ 0.16
CDX2-202ENST00000548877 LPXNO60711 386 aa16.06■□□□□ 0.16
CDX2-202ENST00000548877 BAIAP3O94812 1187 aa16.06■□□□□ 0.16
CDX2-202ENST00000548877 MCCP23508 829 aa16.06■□□□□ 0.16
CDX2-202ENST00000548877 TFAP4Q01664 338 aa16.06■□□□□ 0.16
CDX2-202ENST00000548877 DEFB128Q7Z7B8 93 aa16.06■□□□□ 0.16
CDX2-202ENST00000548877 WDR11Q9BZH6 1224 aa16.06■□□□□ 0.16
CDX2-202ENST00000548877 CHMP4BQ9H444 224 aaKnown RBP16.06■□□□□ 0.16
CDX2-202ENST00000548877 ADD3Q9UEY8 706 aaKnown RBP16.06■□□□□ 0.16
CDX2-202ENST00000548877 TRIP12Q14669 1992 aaPredicted RBP16.06■□□□□ 0.16
CDX2-202ENST00000548877 ICAM1P05362 532 aa16.05■□□□□ 0.16
CDX2-202ENST00000548877 ALDH5A1P51649 535 aaPredicted RBP16.05■□□□□ 0.16
CDX2-202ENST00000548877 GRB10Q13322 594 aa16.05■□□□□ 0.16
CDX2-202ENST00000548877 NBPF20Q3BBV1 942 aa16.05■□□□□ 0.16
CDX2-202ENST00000548877 KRT40Q6A162 431 aa16.05■□□□□ 0.16
CDX2-202ENST00000548877 ARNTL2Q8WYA1 636 aa16.05■□□□□ 0.16
CDX2-202ENST00000548877 BCL11AQ9H165 835 aa16.05■□□□□ 0.16
CDX2-202ENST00000548877 CERS4Q9HA82 394 aa16.05■□□□□ 0.16
CDX2-202ENST00000548877 A6NJR5 290 aa16.04■□□□□ 0.16
CDX2-202ENST00000548877 PI4K2BG5E9Z4 385 aa16.04■□□□□ 0.16
CDX2-202ENST00000548877 M0R2C6 588 aa16.04■□□□□ 0.16
CDX2-202ENST00000548877 NKRFO15226 690 aaKnown RBP eCLIP16.04■□□□□ 0.16
CDX2-202ENST00000548877 SLC3A2P08195 630 aaKnown RBP16.04■□□□□ 0.16
CDX2-202ENST00000548877 IKQ13123 557 aaPredicted RBP16.04■□□□□ 0.16
CDX2-202ENST00000548877 BFSP2Q13515 415 aa16.04■□□□□ 0.16
CDX2-202ENST00000548877 LRRFIP1Q32MZ4 808 aaKnown RBP16.04■□□□□ 0.16
CDX2-202ENST00000548877 BTNL9Q6UXG8 535 aa16.04■□□□□ 0.16
CDX2-202ENST00000548877 NSMFQ6X4W1 530 aa16.04■□□□□ 0.16
CDX2-202ENST00000548877 KCTD1Q719H9 257 aa16.04■□□□□ 0.16
CDX2-202ENST00000548877 RETREG2Q8NC44 543 aa16.04■□□□□ 0.16
CDX2-202ENST00000548877 KHSRPQ92945 711 aaKnown RBP eCLIP16.04■□□□□ 0.16
CDX2-202ENST00000548877 PURBQ96QR8 312 aaKnown RBP16.04■□□□□ 0.16
CDX2-202ENST00000548877 NACAP1Q9BZK3 213 aa16.04■□□□□ 0.16
CDX2-202ENST00000548877 RANBP17Q9H2T7 1088 aaKnown RBP16.04■□□□□ 0.16
CDX2-202ENST00000548877 CCPG1Q9ULG6 757 aa16.04■□□□□ 0.16
CDX2-202ENST00000548877 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.04■□□□□ 0.16
CDX2-202ENST00000548877 COL4A4P53420 1690 aaPredicted RBP16.04■□□□□ 0.16
CDX2-202ENST00000548877 MUC6Q6W4X9 2439 aa16.04■□□□□ 0.16
CDX2-202ENST00000548877 APPP05067 770 aa16.03■□□□□ 0.16
CDX2-202ENST00000548877 PPARAQ07869 468 aa16.03■□□□□ 0.16
CDX2-202ENST00000548877 BAATQ14032 418 aaPredicted RBP16.03■□□□□ 0.16
CDX2-202ENST00000548877 BRDTQ58F21 947 aaPredicted RBP16.03■□□□□ 0.16
CDX2-202ENST00000548877 OR6J1Q8NGC5 347 aa16.03■□□□□ 0.16
CDX2-202ENST00000548877 GPHNQ9NQX3 736 aaPredicted RBP16.03■□□□□ 0.16
CDX2-202ENST00000548877 IL17RBQ9NRM6 502 aa16.03■□□□□ 0.16
CDX2-202ENST00000548877 SMARCA5O60264 1052 aaPredicted RBP16.02■□□□□ 0.16
CDX2-202ENST00000548877 MYL3P08590 195 aa16.02■□□□□ 0.16
CDX2-202ENST00000548877 EDNRBP24530 442 aa16.02■□□□□ 0.16
CDX2-202ENST00000548877 SNAP25P60880 206 aa16.02■□□□□ 0.16
CDX2-202ENST00000548877 DCAF4Q8WV16 495 aa16.02■□□□□ 0.16
CDX2-202ENST00000548877 RAD50Q92878 1312 aa16.01■□□□□ 0.15
CDX2-202ENST00000548877 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.01■□□□□ 0.15
CDX2-202ENST00000548877 PARNO95453 639 aaKnown RBP16.01■□□□□ 0.15
CDX2-202ENST00000548877 NEFLP07196 543 aa16.01■□□□□ 0.15
CDX2-202ENST00000548877 RBL2Q08999 1139 aa16.01■□□□□ 0.15
CDX2-202ENST00000548877 GPNMBQ14956 572 aa16.01■□□□□ 0.15
CDX2-202ENST00000548877 SESTD1Q86VW0 696 aa16.01■□□□□ 0.15
CDX2-202ENST00000548877 CAGE1Q8TC20 777 aa16.01■□□□□ 0.15
CDX2-202ENST00000548877 AFAP1L1Q8TED9 768 aa16.01■□□□□ 0.15
CDX2-202ENST00000548877 SCFD2Q8WU76 684 aa16.01■□□□□ 0.15
CDX2-202ENST00000548877 CLEC4DQ8WXI8 215 aa16.01■□□□□ 0.15
CDX2-202ENST00000548877 CTAGE1Q96RT6 745 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms