RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 ZNF341Q9BYN7 854 aa16.19■□□□□ 0.18
VPS33A-209ENST00000544349 A0A087X0B3 334 aa16.18■□□□□ 0.18
VPS33A-209ENST00000544349 ACTN4O43707 911 aaKnown RBP16.18■□□□□ 0.18
VPS33A-209ENST00000544349 EDIL3O43854 480 aa16.18■□□□□ 0.18
VPS33A-209ENST00000544349 PRR29P0C7W0 189 aa16.18■□□□□ 0.18
VPS33A-209ENST00000544349 BMP6P22004 513 aa16.18■□□□□ 0.18
VPS33A-209ENST00000544349 INPP5BP32019 993 aa16.18■□□□□ 0.18
VPS33A-209ENST00000544349 PRAMEF18Q5VWM3 479 aa16.18■□□□□ 0.18
VPS33A-209ENST00000544349 ARMCX5Q6P1M9 558 aa16.18■□□□□ 0.18
VPS33A-209ENST00000544349 ZNF112Q9UJU3 913 aa16.18■□□□□ 0.18
VPS33A-209ENST00000544349 PPP2R3BQ9Y5P8 575 aa16.18■□□□□ 0.18
VPS33A-209ENST00000544349 NEMFO60524 1076 aa16.18■□□□□ 0.18
VPS33A-209ENST00000544349 KANK3Q6NY19 840 aa16.18■□□□□ 0.18
VPS33A-209ENST00000544349 FEZ1Q99689 392 aa16.18■□□□□ 0.18
VPS33A-209ENST00000544349 HOOK1Q9UJC3 728 aaKnown RBP16.18■□□□□ 0.18
VPS33A-209ENST00000544349 POLR2AP24928 1970 aaKnown RBP16.17■□□□□ 0.18
VPS33A-209ENST00000544349 USP17L15C9J2P7 530 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 USP17L13C9JLJ4 530 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 USP17L11C9JVI0 530 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 USP17L18D6R9N7 530 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 USP17L22D6RA61 530 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 USP17L17D6RBQ6 530 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 USP17L19D6RCP7 530 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 USP17L20D6RJB6 530 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 IKBKBO14920 756 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 OR52Z1P0C646 297 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 USP17L24Q0WX57 530 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 USH1GQ495M9 461 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 C9orf131Q5VYM1 1079 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 USP17L6PQ6QN14 398 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 FAM160B2Q86V87 743 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 DHX58Q96C10 678 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 FEM1BQ9UK73 627 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 PCDHA5Q9Y5H7 936 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 DOCK1Q14185 1865 aa16.17■□□□□ 0.18
VPS33A-209ENST00000544349 MEIS2O14770 477 aa16.16■□□□□ 0.18
VPS33A-209ENST00000544349 CTIFO43310 598 aaKnown RBP16.16■□□□□ 0.18
VPS33A-209ENST00000544349 FANCCQ00597 558 aa16.16■□□□□ 0.18
VPS33A-209ENST00000544349 POSTNQ15063 836 aa16.16■□□□□ 0.18
VPS33A-209ENST00000544349 PTPN21Q16825 1174 aa16.16■□□□□ 0.18
VPS33A-209ENST00000544349 GRAMD1CQ8IYS0 662 aa16.16■□□□□ 0.18
VPS33A-209ENST00000544349 MAP7D2Q96T17 732 aa16.16■□□□□ 0.18
VPS33A-209ENST00000544349 KIAA1683Q9H0B3 1180 aa16.16■□□□□ 0.18
VPS33A-209ENST00000544349 RANBP17Q9H2T7 1088 aaKnown RBP16.16■□□□□ 0.18
VPS33A-209ENST00000544349 MYH7BA7E2Y1 1941 aa16.16■□□□□ 0.18
VPS33A-209ENST00000544349 SMTNL1A8MU46 457 aa16.16■□□□□ 0.18
VPS33A-209ENST00000544349 NYAP1Q6ZVC0 841 aa16.16■□□□□ 0.18
VPS33A-209ENST00000544349 KIFC2Q96AC6 838 aa16.16■□□□□ 0.18
VPS33A-209ENST00000544349 ADARB2Q9NS39 739 aaKnown RBP16.16■□□□□ 0.18
VPS33A-209ENST00000544349 TRMT1Q9NXH9 659 aaKnown RBP16.16■□□□□ 0.18
VPS33A-209ENST00000544349 PITPNM2Q9BZ72 1349 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 SLFN14P0C7P3 912 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 GSDMDP57764 484 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 MYL5Q02045 173 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 TRAF1Q13077 416 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 PPP4R3AQ6IN85 833 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 POTEDQ86YR6 584 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 SCYL3Q8IZE3 742 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 CCAR2Q8N163 923 aaKnown RBP16.15■□□□□ 0.18
VPS33A-209ENST00000544349 UBE2Q2Q8WVN8 375 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 LPAR1Q92633 364 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 PYM1Q9BRP8 204 aaKnown RBP16.15■□□□□ 0.18
VPS33A-209ENST00000544349 SRCAPQ6ZRS2 3230 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 SMCHD1A6NHR9 2005 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 WDR46O15213 610 aaKnown RBP16.15■□□□□ 0.18
VPS33A-209ENST00000544349 TDP2O95551 362 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 AP3B2Q13367 1082 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 E2F4Q16254 413 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 MCTP2Q6DN12 878 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 CCDC34Q96HJ3 373 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 WRNIP1Q96S55 665 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 ANO3Q9BYT9 981 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 FBXO28Q9NVF7 368 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 IMPACTQ9P2X3 320 aa16.15■□□□□ 0.18
VPS33A-209ENST00000544349 TAL1P17542 331 aaPredicted RBP16.14■□□□□ 0.17
VPS33A-209ENST00000544349 CDC25AP30304 524 aa16.14■□□□□ 0.17
VPS33A-209ENST00000544349 TXLNAP40222 546 aa16.14■□□□□ 0.17
VPS33A-209ENST00000544349 TPM4P67936 248 aa16.14■□□□□ 0.17
VPS33A-209ENST00000544349 NT5DC1Q5TFE4 455 aa16.14■□□□□ 0.17
VPS33A-209ENST00000544349 SH3RF1Q7Z6J0 888 aa16.14■□□□□ 0.17
VPS33A-209ENST00000544349 IQUBQ8NA54 791 aa16.14■□□□□ 0.17
VPS33A-209ENST00000544349 ZKSCAN4Q969J2 545 aaPredicted RBP16.14■□□□□ 0.17
VPS33A-209ENST00000544349 MTMR9Q96QG7 549 aa16.14■□□□□ 0.17
VPS33A-209ENST00000544349 MAN1B1Q9UKM7 699 aa16.14■□□□□ 0.17
VPS33A-209ENST00000544349 FZD1Q9UP38 647 aa16.14■□□□□ 0.17
VPS33A-209ENST00000544349 OPLAHO14841 1288 aa16.13■□□□□ 0.17
VPS33A-209ENST00000544349 SLC37A4O43826 429 aa16.13■□□□□ 0.17
VPS33A-209ENST00000544349 SARSP49591 514 aaKnown RBP16.13■□□□□ 0.17
VPS33A-209ENST00000544349 CALCRLQ16602 461 aa16.13■□□□□ 0.17
VPS33A-209ENST00000544349 CEP135Q66GS9 1140 aa16.13■□□□□ 0.17
VPS33A-209ENST00000544349 E4F1Q66K89 784 aaPredicted RBP16.13■□□□□ 0.17
VPS33A-209ENST00000544349 CCDC174Q6PII3 467 aa16.13■□□□□ 0.17
VPS33A-209ENST00000544349 ZNF592Q92610 1267 aa16.13■□□□□ 0.17
VPS33A-209ENST00000544349 KLRG1Q96E93 195 aa16.13■□□□□ 0.17
VPS33A-209ENST00000544349 PAGE5Q96GU1 130 aa16.13■□□□□ 0.17
VPS33A-209ENST00000544349 AK8Q96MA6 479 aa16.13■□□□□ 0.17
VPS33A-209ENST00000544349 WDR18Q9BV38 432 aa16.13■□□□□ 0.17
VPS33A-209ENST00000544349 CCSER1Q9C0I3 900 aa16.13■□□□□ 0.17
VPS33A-209ENST00000544349 SSC5DA1L4H1 1573 aa16.13■□□□□ 0.17
VPS33A-209ENST00000544349 SUPT20HL1Q3ZLR7 823 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms