RNA–Protein interactions for RNA: ENST00000542841.1

SRGAP1-205, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 2

Gene SRGAP1, Length 836 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-205ENST00000542841 TMEM87BQ96K49 555 aa13.47□□□□□ -0.25
SRGAP1-205ENST00000542841 NKX2-4Q9H2Z4 354 aa13.47□□□□□ -0.25
SRGAP1-205ENST00000542841 ABHD16BQ9H3Z7 469 aa13.47□□□□□ -0.25
SRGAP1-205ENST00000542841 IL23AQ9NPF7 189 aa13.47□□□□□ -0.25
SRGAP1-205ENST00000542841 CXXC1Q9P0U4 656 aaPredicted RBP13.47□□□□□ -0.25
SRGAP1-205ENST00000542841 DNAJC25-GNG10A0A024R161 153 aa13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 FGBP02675 491 aa13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 CPA1P15085 419 aa13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 CYP2C18P33260 490 aa13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 EVCP57679 992 aa13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 GJA9P57773 515 aa13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 IRX5P78411 483 aaPredicted RBP13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 TOB2Q14106 344 aaPredicted RBP13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 AAK1Q2M2I8 961 aa13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 CCDC144BQ3MJ40 725 aa13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 C12orf60Q5U649 245 aa13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 Q6ZUG5 572 aa13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 C16orf86Q6ZW13 317 aa13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 SLF1Q9BQI6 1058 aa13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 UPF3AQ9H1J1 476 aaKnown RBP13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 ZNF287Q9HBT7 754 aa13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.46□□□□□ -0.25
SRGAP1-205ENST00000542841 MYH8P13535 1937 aa13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 USP17L12C9JPN9 530 aa13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 USP17L21D6R901 530 aa13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 PRC1O43663 620 aa13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 ORC4O43929 436 aa13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 CD4P01730 458 aa13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 PDIA4P13667 645 aaKnown RBP13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 DDIT3P35638 169 aa13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 FGD1P98174 961 aa13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 PDE4BQ07343 736 aa13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 SART3Q15020 963 aaKnown RBP13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 OTOP2Q7RTS6 562 aa13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 PRPF38AQ8NAV1 312 aaKnown RBP13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 ESR2Q92731 530 aa13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 HIPK3Q9H422 1215 aa13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 CHMP5Q9NZZ3 219 aa13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 YBX2Q9Y2T7 364 aaKnown RBP13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 RIPK3Q9Y572 518 aa13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 CTDP1Q9Y5B0 961 aaPredicted RBP13.45□□□□□ -0.26
SRGAP1-205ENST00000542841 CYP2D7A0A087X1C5 515 aa13.44□□□□□ -0.26
SRGAP1-205ENST00000542841 MINDY4BA8MYZ0 360 aa13.44□□□□□ -0.26
SRGAP1-205ENST00000542841 ATP2A1O14983 1001 aa13.44□□□□□ -0.26
SRGAP1-205ENST00000542841 ADCY6O43306 1168 aa13.44□□□□□ -0.26
SRGAP1-205ENST00000542841 BMP1P13497 986 aa13.44□□□□□ -0.26
SRGAP1-205ENST00000542841 LIFRP42702 1097 aa13.44□□□□□ -0.26
SRGAP1-205ENST00000542841 PPP2R2DQ66LE6 453 aa13.44□□□□□ -0.26
SRGAP1-205ENST00000542841 ANKRD35Q8N283 1001 aa13.44□□□□□ -0.26
SRGAP1-205ENST00000542841 TMTC2Q8N394 836 aa13.44□□□□□ -0.26
SRGAP1-205ENST00000542841 MICALL1Q8N3F8 863 aa13.44□□□□□ -0.26
SRGAP1-205ENST00000542841 ZNF274Q96GC6 653 aaPredicted RBP13.44□□□□□ -0.26
SRGAP1-205ENST00000542841 NECAB3Q96P71 396 aaPredicted RBP13.44□□□□□ -0.26
SRGAP1-205ENST00000542841 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.44□□□□□ -0.26
SRGAP1-205ENST00000542841 NEDD4P46934 1319 aa13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 CHD9Q3L8U1 2897 aa13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 SMIM22K7EJ46 135 aa13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 ZBED4O75132 1171 aa13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 HOXD11P31277 338 aaPredicted RBP13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 RCAN1P53805 252 aa13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 CTDSPL2Q05D32 466 aa13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 MYO9BQ13459 2157 aa13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 CCDC178Q5BJE1 867 aa13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 ARMCX2Q7L311 632 aa13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 SGMS1Q86VZ5 419 aa13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 CPXCR1Q8N123 301 aa13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 BRF1Q92994 677 aa13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 NUP88Q99567 741 aaPredicted RBP13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 FBXO40Q9UH90 709 aa13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 TPCN1Q9ULQ1 816 aa13.43□□□□□ -0.26
SRGAP1-205ENST00000542841 ERICH2A1L162 156 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 B4E1Z4 1266 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 F5H6K3 240 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 SH2B2O14492 632 aaPredicted RBP13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 CABYRO75952 493 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 RABGGTBP53611 331 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 ANTXR2P58335 489 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 NKX3-2P78367 333 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 NUCB2P80303 420 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 TFF2Q03403 129 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 KLRC3Q07444 240 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 SKIV2LQ15477 1246 aaKnown RBP13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 ME3Q16798 604 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 NOL8Q76FK4 1167 aaKnown RBP13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 CCDC144CPQ8IYA2 1237 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 RPUSD2Q8IZ73 545 aaKnown RBP13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 SLC43A3Q8NBI5 491 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 LLPHQ9BRT6 129 aaKnown RBP13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 SEZ6LQ9BYH1 1024 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 SLKQ9H2G2 1235 aaPredicted RBP13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 HCN4Q9Y3Q4 1203 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 ARIH1Q9Y4X5 557 aaPredicted RBP13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 PCDHA11Q9Y5I1 949 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 SLC4A7Q9Y6M7 1214 aa13.42□□□□□ -0.26
SRGAP1-205ENST00000542841 CTAGE5O15320 804 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 PFKFB2O60825 505 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 KDM4AO75164 1064 aa13.41□□□□□ -0.26
SRGAP1-205ENST00000542841 NDUFB10O96000 172 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms