RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 GNEQ9Y223 722 aaKnown RBP16.53■□□□□ 0.24
USP28-209ENST00000540925 MYH6P13533 1939 aa16.53■□□□□ 0.24
USP28-209ENST00000540925 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.52■□□□□ 0.24
USP28-209ENST00000540925 PTPDC1A2A3K4 754 aa16.52■□□□□ 0.24
USP28-209ENST00000540925 GJA9P57773 515 aa16.52■□□□□ 0.24
USP28-209ENST00000540925 ADCK5Q3MIX3 580 aa16.52■□□□□ 0.24
USP28-209ENST00000540925 SGMS1Q86VZ5 419 aa16.52■□□□□ 0.24
USP28-209ENST00000540925 C7orf61Q8IZ16 206 aa16.52■□□□□ 0.24
USP28-209ENST00000540925 TMTC2Q8N394 836 aa16.52■□□□□ 0.24
USP28-209ENST00000540925 DNERQ8NFT8 737 aa16.52■□□□□ 0.24
USP28-209ENST00000540925 TSEN34Q9BSV6 310 aaKnown RBP16.52■□□□□ 0.24
USP28-209ENST00000540925 AMNQ9BXJ7 453 aa16.52■□□□□ 0.24
USP28-209ENST00000540925 VAT1LQ9HCJ6 419 aa16.52■□□□□ 0.24
USP28-209ENST00000540925 VTA1Q9NP79 307 aa16.52■□□□□ 0.24
USP28-209ENST00000540925 COL20A1Q9P218 1284 aa16.52■□□□□ 0.24
USP28-209ENST00000540925 RBM47A0AV96 593 aaKnown RBP16.51■□□□□ 0.23
USP28-209ENST00000540925 MYADML2A6NDP7 307 aa16.51■□□□□ 0.23
USP28-209ENST00000540925 CALML3P27482 149 aa16.51■□□□□ 0.23
USP28-209ENST00000540925 SMARCA1P28370 1054 aa16.51■□□□□ 0.23
USP28-209ENST00000540925 ADCYAP1R1P41586 468 aa16.51■□□□□ 0.23
USP28-209ENST00000540925 IRX5P78411 483 aaPredicted RBP16.51■□□□□ 0.23
USP28-209ENST00000540925 SLC39A5Q6ZMH5 540 aa16.51■□□□□ 0.23
USP28-209ENST00000540925 RNF180Q86T96 592 aa16.51■□□□□ 0.23
USP28-209ENST00000540925 FBXO16Q8IX29 292 aaPredicted RBP16.51■□□□□ 0.23
USP28-209ENST00000540925 SYTL5Q8TDW5 730 aaPredicted RBP16.51■□□□□ 0.23
USP28-209ENST00000540925 MYL10Q9BUA6 226 aa16.51■□□□□ 0.23
USP28-209ENST00000540925 SPZ1Q9BXG8 430 aa16.51■□□□□ 0.23
USP28-209ENST00000540925 PDGFCQ9NRA1 345 aa16.51■□□□□ 0.23
USP28-209ENST00000540925 COLQQ9Y215 455 aaPredicted RBP16.51■□□□□ 0.23
USP28-209ENST00000540925 MRPL11Q9Y3B7 192 aaKnown RBP16.51■□□□□ 0.23
USP28-209ENST00000540925 BAZ2BQ9UIF8 2168 aaKnown RBP16.5■□□□□ 0.23
USP28-209ENST00000540925 HSPA4P34932 840 aa16.5■□□□□ 0.23
USP28-209ENST00000540925 HSD17B4P51659 736 aa16.5■□□□□ 0.23
USP28-209ENST00000540925 NEK1Q96PY6 1258 aa16.5■□□□□ 0.23
USP28-209ENST00000540925 PIGSQ96S52 555 aa16.5■□□□□ 0.23
USP28-209ENST00000540925 LRRC2Q9BYS8 371 aa16.5■□□□□ 0.23
USP28-209ENST00000540925 LAMA2P24043 3122 aaKnown RBP16.5■□□□□ 0.23
USP28-209ENST00000540925 PNMA6FA0A0J9YX94 578 aa16.49■□□□□ 0.23
USP28-209ENST00000540925 A0A1W2PQ45 241 aaPredicted RBP16.49■□□□□ 0.23
USP28-209ENST00000540925 A0A1W2PQY0 241 aa16.49■□□□□ 0.23
USP28-209ENST00000540925 MOXD2PA6NHM9 499 aa16.49■□□□□ 0.23
USP28-209ENST00000540925 DHX16O60231 1041 aaKnown RBP16.49■□□□□ 0.23
USP28-209ENST00000540925 SMPD1P17405 629 aa16.49■□□□□ 0.23
USP28-209ENST00000540925 ACLYP53396 1101 aa16.49■□□□□ 0.23
USP28-209ENST00000540925 ATN1P54259 1190 aaPredicted RBP16.49■□□□□ 0.23
USP28-209ENST00000540925 RTP1P59025 263 aa16.49■□□□□ 0.23
USP28-209ENST00000540925 TNFAIP2Q03169 654 aa16.49■□□□□ 0.23
USP28-209ENST00000540925 KRT32Q14532 448 aa16.49■□□□□ 0.23
USP28-209ENST00000540925 TMEM63BQ5T3F8 832 aa16.49■□□□□ 0.23
USP28-209ENST00000540925 IQSEC1Q6DN90 963 aa16.49■□□□□ 0.23
USP28-209ENST00000540925 DHX32Q7L7V1 743 aaKnown RBP16.49■□□□□ 0.23
USP28-209ENST00000540925 MCF2L2Q86YR7 1114 aa16.49■□□□□ 0.23
USP28-209ENST00000540925 Q9Y3F1 56 aa16.49■□□□□ 0.23
USP28-209ENST00000540925 PCDHA1Q9Y5I3 950 aa16.49■□□□□ 0.23
USP28-209ENST00000540925 EPB41L2O43491 1005 aaKnown RBP16.48■□□□□ 0.23
USP28-209ENST00000540925 PTGS1P23219 599 aa16.48■□□□□ 0.23
USP28-209ENST00000540925 KCNA10Q16322 511 aa16.48■□□□□ 0.23
USP28-209ENST00000540925 CHRDL2Q6WN34 429 aa16.48■□□□□ 0.23
USP28-209ENST00000540925 EEPD1Q7L9B9 569 aa16.48■□□□□ 0.23
USP28-209ENST00000540925 SAMD3Q8N6K7 520 aa16.48■□□□□ 0.23
USP28-209ENST00000540925 NUP133Q8WUM0 1156 aa16.48■□□□□ 0.23
USP28-209ENST00000540925 FERMT2Q96AC1 680 aa16.48■□□□□ 0.23
USP28-209ENST00000540925 TAAR1Q96RJ0 339 aa16.48■□□□□ 0.23
USP28-209ENST00000540925 GDF15Q99988 308 aa16.48■□□□□ 0.23
USP28-209ENST00000540925 MAP3K20Q9NYL2 800 aaKnown RBP16.48■□□□□ 0.23
USP28-209ENST00000540925 COL6A3P12111 3177 aa16.48■□□□□ 0.23
USP28-209ENST00000540925 CCDC69A6NI79 296 aa16.47■□□□□ 0.23
USP28-209ENST00000540925 PLEKHA8P1O95397 391 aa16.47■□□□□ 0.23
USP28-209ENST00000540925 CALM1P0DP23 149 aa16.47■□□□□ 0.23
USP28-209ENST00000540925 CALM2P0DP24 149 aa16.47■□□□□ 0.23
USP28-209ENST00000540925 CALM3P0DP25 149 aa16.47■□□□□ 0.23
USP28-209ENST00000540925 KIF5BP33176 963 aa16.47■□□□□ 0.23
USP28-209ENST00000540925 DUSP28Q4G0W2 176 aa16.47■□□□□ 0.23
USP28-209ENST00000540925 HOMER1Q86YM7 354 aa16.47■□□□□ 0.23
USP28-209ENST00000540925 SRBD1Q8N5C6 995 aaKnown RBP16.47■□□□□ 0.23
USP28-209ENST00000540925 CTCFLQ8NI51 663 aaPredicted RBP16.47■□□□□ 0.23
USP28-209ENST00000540925 LZTS2Q9BRK4 669 aa16.47■□□□□ 0.23
USP28-209ENST00000540925 RBM27Q9P2N5 1060 aaKnown RBP16.47■□□□□ 0.23
USP28-209ENST00000540925 ZMYND8Q9ULU4 1186 aaPredicted RBP16.47■□□□□ 0.23
USP28-209ENST00000540925 SNX14Q9Y5W7 946 aa16.47■□□□□ 0.23
USP28-209ENST00000540925 REC8O95072 547 aa16.46■□□□□ 0.23
USP28-209ENST00000540925 MYCNP04198 464 aaPredicted RBP16.46■□□□□ 0.23
USP28-209ENST00000540925 HMGB1P09429 215 aaKnown RBP16.46■□□□□ 0.23
USP28-209ENST00000540925 C6orf222P0C671 652 aaPredicted RBP16.46■□□□□ 0.23
USP28-209ENST00000540925 SYN1P17600 705 aa16.46■□□□□ 0.23
USP28-209ENST00000540925 BMP8BP34820 402 aa16.46■□□□□ 0.23
USP28-209ENST00000540925 PDE4DQ08499 809 aa16.46■□□□□ 0.23
USP28-209ENST00000540925 TRAF1Q13077 416 aa16.46■□□□□ 0.23
USP28-209ENST00000540925 TRIM60Q495X7 471 aa16.46■□□□□ 0.23
USP28-209ENST00000540925 APOA5Q6Q788 366 aa16.46■□□□□ 0.23
USP28-209ENST00000540925 NFXL1Q6ZNB6 911 aa16.46■□□□□ 0.23
USP28-209ENST00000540925 TLK2Q86UE8 772 aa16.46■□□□□ 0.23
USP28-209ENST00000540925 FBXL16Q8N461 479 aa16.46■□□□□ 0.23
USP28-209ENST00000540925 FANCBQ8NB91 859 aa16.46■□□□□ 0.23
USP28-209ENST00000540925 PCSK9Q8NBP7 692 aaKnown RBP16.46■□□□□ 0.23
USP28-209ENST00000540925 NSUN6Q8TEA1 469 aaKnown RBP16.46■□□□□ 0.23
USP28-209ENST00000540925 TCEANC2Q96MN5 208 aa16.46■□□□□ 0.23
USP28-209ENST00000540925 IWS1Q96ST2 819 aa16.46■□□□□ 0.23
USP28-209ENST00000540925 BRPF3Q9ULD4 1205 aa16.46■□□□□ 0.23
USP28-209ENST00000540925 SLC12A7Q9Y666 1083 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms