RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 XPO4Q9C0E2 1151 aaKnown RBP10.88□□□□□ -0.67
CLIP1-212ENST00000540304 GLT8D2Q9H1C3 349 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 VEZTQ9HBM0 779 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 IFNKQ9P0W0 207 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 GTPBP6O43824 516 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-212ENST00000540304 CDC25AP30304 524 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 CLK2P49760 499 aaKnown RBP10.88□□□□□ -0.67
CLIP1-212ENST00000540304 CDC37Q16543 378 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-212ENST00000540304 CCDC144BQ3MJ40 725 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 HSP90AA4PQ58FG1 418 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 FAM83AQ86UY5 434 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 RASSF8Q8NHQ8 419 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 ENOX1Q8TC92 643 aaKnown RBP10.88□□□□□ -0.67
CLIP1-212ENST00000540304 JDP2Q8WYK2 163 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 PSTPIP2Q9H939 334 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 EFCC1Q9HA90 598 aa10.88□□□□□ -0.67
CLIP1-212ENST00000540304 PP2D1A8MPX8 630 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 ERCC5P28715 1186 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-212ENST00000540304 FANCCQ00597 558 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 LRMPQ12912 555 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 PTPN21Q16825 1174 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 ZNF710Q8N1W2 664 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 ZBED3Q96IU2 234 aaPredicted RBP10.87□□□□□ -0.67
CLIP1-212ENST00000540304 ARHGEF10LQ9HCE6 1279 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 TBC1D12O60347 775 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 BMP3P12645 472 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 ATP1A3P13637 1013 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 TNNI2P48788 182 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 FMR1Q06787 632 aaKnown RBP eCLIP10.87□□□□□ -0.674e-6■■■■□ 21.6
CLIP1-212ENST00000540304 UBE2SQ16763 222 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 RRAGBQ5VZM2 374 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 KIAA1524Q8TCG1 905 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 STAMQ92783 540 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 BORCS6Q96GS4 357 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 MTRQ99707 1265 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 FANCLQ9NW38 375 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 IMPACTQ9P2X3 320 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 PYCARDQ9ULZ3 195 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 PCDHA1Q9Y5I3 950 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 MYH7BA7E2Y1 1941 aa10.87□□□□□ -0.67
CLIP1-212ENST00000540304 A0A1W2PRG0 241 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 TTC36A6NLP5 189 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 CBFA2T2O43439 604 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 CCDC172P0C7W6 258 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 ARID5BQ14865 1188 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 TNIP1Q15025 636 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 CALCRLQ16602 461 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 MTMR9Q96QG7 549 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 NUP88Q99567 741 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-212ENST00000540304 ZBTB21Q9ULJ3 1066 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 NFKBIEO00221 500 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 SERPINC1P01008 464 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 CUL4BQ13620 913 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 NOLC1Q14978 699 aaKnown RBP eCLIP10.86□□□□□ -0.67
CLIP1-212ENST00000540304 NAALADL2Q58DX5 795 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 SYDE2Q5VT97 1194 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 PPP4R3AQ6IN85 833 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 BTNL9Q6UXG8 535 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 FILIP1Q7Z7B0 1213 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 CABP7Q86V35 215 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 AMNQ9BXJ7 453 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 TMEM39BQ9GZU3 492 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 BLZF1Q9H2G9 400 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 CUEDC2Q9H467 287 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 MAGEF1Q9HAY2 307 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 MYOZ2Q9NPC6 264 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 RMND1Q9NWS8 449 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 PPP1R1BQ9UD71 204 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-212ENST00000540304 NFE2L3Q9Y4A8 694 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 CD2APQ9Y5K6 639 aa10.86□□□□□ -0.67
CLIP1-212ENST00000540304 WNT10BO00744 389 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 EDIL3O43854 480 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 TDP2O95551 362 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 MYL1P05976 194 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 TECP42680 631 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 GSDMDP57764 484 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 IKQ13123 557 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-212ENST00000540304 IGSF22Q8N9C0 903 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 CACTINQ8WUQ7 758 aaKnown RBP10.85□□□□□ -0.67
CLIP1-212ENST00000540304 TSC1Q92574 1164 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 TRERF1Q96PN7 1200 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 NAP1L4Q99733 375 aaKnown RBP10.85□□□□□ -0.67
CLIP1-212ENST00000540304 SPTLC3Q9NUV7 552 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 SYNRGQ9UMZ2 1314 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 CCDC66A2RUB6 948 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 TMEM232C9JQI7 657 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 SLC37A4O43826 429 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 GCFC2P16383 781 aaKnown RBP10.85□□□□□ -0.67
CLIP1-212ENST00000540304 ZNF18P17022 549 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 TXKP42681 527 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 FXR2P51116 673 aaKnown RBP eCLIP10.85□□□□□ -0.674e-6■■■□□ 18.2
CLIP1-212ENST00000540304 UBASH3AP57075 661 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 TMEM266Q2M3C6 531 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 NBPF9Q3BBW0 867 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 LRRC8AQ8IWT6 810 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 TRMT44Q8IYL2 757 aaKnown RBP10.85□□□□□ -0.67
CLIP1-212ENST00000540304 NCAPGQ9BPX3 1015 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 GOPCQ9HD26 462 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 TMX2Q9Y320 296 aa10.85□□□□□ -0.67
CLIP1-212ENST00000540304 ATAD5Q96QE3 1844 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms