RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 PTPREP23469 700 aa11.11□□□□□ -0.63
TRAF1-202ENST00000540010 GBP2P32456 591 aaPredicted RBP11.11□□□□□ -0.63
TRAF1-202ENST00000540010 FUT2Q10981 343 aa11.11□□□□□ -0.63
TRAF1-202ENST00000540010 DEFB132Q7Z7B7 95 aa11.11□□□□□ -0.63
TRAF1-202ENST00000540010 LARGE2Q8N3Y3 721 aa11.11□□□□□ -0.63
TRAF1-202ENST00000540010 GPR161Q8N6U8 529 aaKnown RBP11.11□□□□□ -0.63
TRAF1-202ENST00000540010 C6orf50Q9HD87 102 aa11.11□□□□□ -0.63
TRAF1-202ENST00000540010 CHD4Q14839 1912 aa11.11□□□□□ -0.63
TRAF1-202ENST00000540010 KRT13P13646 458 aa11.11□□□□□ -0.63
TRAF1-202ENST00000540010 TUBB4BP68371 445 aa11.11□□□□□ -0.63
TRAF1-202ENST00000540010 PTGDRQ13258 359 aa11.11□□□□□ -0.63
TRAF1-202ENST00000540010 SRPRBQ9Y5M8 271 aaKnown RBP11.11□□□□□ -0.63
TRAF1-202ENST00000540010 TBCAO75347 108 aaKnown RBP11.1□□□□□ -0.63
TRAF1-202ENST00000540010 AKR1B1P15121 316 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 CETN2P41208 172 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 TXKP42681 527 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 CETN1Q12798 172 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 RAPGEF1Q13905 1077 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 HHIPL2Q6UWX4 724 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 SND1Q7KZF4 910 aaKnown RBP eCLIP11.1□□□□□ -0.63
TRAF1-202ENST00000540010 CPLX4Q7Z7G2 160 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 JAKMIP2Q96AA8 810 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 TAOK3Q9H2K8 898 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 SWAP70Q9UH65 585 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 CCDC88AQ3V6T2 1871 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 GOLGA6CA6NDK9 693 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 GOLGA6DP0CG33 693 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 STRIP1Q5VSL9 837 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 CLEC10AQ8IUN9 316 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 FERMT2Q96AC1 680 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 SELENOOQ9BVL4 669 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 OSBPL5Q9H0X9 879 aaPredicted RBP11.1□□□□□ -0.63
TRAF1-202ENST00000540010 GOLGA6AQ9NYA3 693 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 MAD2L2Q9UI95 211 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 FBXO2Q9UK22 296 aaPredicted RBP11.1□□□□□ -0.63
TRAF1-202ENST00000540010 PCDHA4Q9UN74 947 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 GRIN1Q05586 938 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 RAD51AP2Q09MP3 1159 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 FBXO38Q6PIJ6 1188 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 DYMQ7RTS9 669 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 GRAMD1CQ8IYS0 662 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 OGFOD1Q8N543 542 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 TTLL6Q8N841 843 aa11.1□□□□□ -0.63
TRAF1-202ENST00000540010 PAIP2Q9BPZ3 127 aaKnown RBP11.1□□□□□ -0.63
TRAF1-202ENST00000540010 DDX4Q9NQI0 724 aaKnown RBP11.1□□□□□ -0.63
TRAF1-202ENST00000540010 FAM207AQ9NSI2 230 aaPredicted RBP11.1□□□□□ -0.63
TRAF1-202ENST00000540010 FAM196BA6NMK8 535 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 USP17L5A8MUK1 530 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 GNA11P29992 359 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 CC2D2BQ6DHV5 1058 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 C8orf74Q6P047 294 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 SMYD4Q8IYR2 804 aaPredicted RBP11.09□□□□□ -0.63
TRAF1-202ENST00000540010 CUL5Q93034 780 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 EFCAB8A8MWE9 144 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 ZBTB22O15209 634 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 TTLL1O95922 423 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 VEGFAP15692 232 aaPredicted RBP11.09□□□□□ -0.63
TRAF1-202ENST00000540010 MAGEA1P43355 309 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 NCBP1Q09161 790 aaKnown RBP11.09□□□□□ -0.63
TRAF1-202ENST00000540010 NFIAQ12857 509 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 EARS2Q5JPH6 523 aaKnown RBP11.09□□□□□ -0.63
TRAF1-202ENST00000540010 NELFBQ8WX92 580 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 CCDC114Q96M63 670 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 ROBO3Q96MS0 1386 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 SMCO2A6NFE2 343 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 IFI16Q16666 785 aaKnown RBP11.09□□□□□ -0.63
TRAF1-202ENST00000540010 RASGRP2Q7LDG7 609 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 PIGSQ96S52 555 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 SELENOSQ9BQE4 189 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 TRIM31Q9BZY9 425 aa11.09□□□□□ -0.63
TRAF1-202ENST00000540010 GOLGA6BA6NDN3 693 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 TMEM110-MUSTN1A8MSY1 372 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 RAD17O75943 681 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 INF2Q27J81 1249 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 CCDC144BQ3MJ40 725 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 DCAF17Q5H9S7 520 aaPredicted RBP11.08□□□□□ -0.64
TRAF1-202ENST00000540010 CCDC25Q86WR0 208 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 ANKS1AQ92625 1134 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 LRRC27Q9C0I9 530 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 NLRC4Q9NPP4 1024 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 HDAC9Q9UKV0 1011 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 PSDA5PKW4 1024 aaPredicted RBP11.08□□□□□ -0.64
TRAF1-202ENST00000540010 SYMPKQ92797 1274 aaKnown RBP11.08□□□□□ -0.64
TRAF1-202ENST00000540010 EPSTI1Q96J88 318 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 PDE11AQ9HCR9 933 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 SH3GLB2Q9NR46 395 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 MTMR4Q9NYA4 1195 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 ENC1O14682 589 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 HGSO14964 777 aaPredicted RBP11.08□□□□□ -0.64
TRAF1-202ENST00000540010 AP5Z1O43299 807 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 CALRP27797 417 aaKnown RBP11.08□□□□□ -0.64
TRAF1-202ENST00000540010 TRAPPC10P48553 1259 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 CERKLQ49MI3 558 aaPredicted RBP11.08□□□□□ -0.64
TRAF1-202ENST00000540010 CCDC93Q567U6 631 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 CCDC121Q6ZUS5 278 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 UBLCP1Q8WVY7 318 aaPredicted RBP11.08□□□□□ -0.64
TRAF1-202ENST00000540010 TDRD3Q9H7E2 651 aaKnown RBP11.08□□□□□ -0.64
TRAF1-202ENST00000540010 SPTLC3Q9NUV7 552 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 PTPROQ16827 1216 aa11.08□□□□□ -0.64
TRAF1-202ENST00000540010 APOBEC3HQ6NTF7 200 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms