RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 APOBEC3HQ6NTF7 200 aaKnown RBP12.39□□□□□ -0.43
TRIM3-211ENST00000532542 DEFB132Q7Z7B7 95 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 VSTM4Q8IW00 320 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 SAMSN1Q9NSI8 373 aaKnown RBP12.39□□□□□ -0.43
TRIM3-211ENST00000532542 B4DLN1 442 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 PSMD14O00487 310 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 EEF1GP26641 437 aaKnown RBP12.39□□□□□ -0.43
TRIM3-211ENST00000532542 KRT9P35527 623 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 GRIN1Q05586 938 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 NSMFQ6X4W1 530 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 TRMT1LQ7Z2T5 733 aaKnown RBP12.39□□□□□ -0.43
TRIM3-211ENST00000532542 CCDC84Q86UT8 332 aaPredicted RBP12.39□□□□□ -0.43
TRIM3-211ENST00000532542 IQCDQ96DY2 449 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 ZNF70Q9UC06 446 aaPredicted RBP12.39□□□□□ -0.43
TRIM3-211ENST00000532542 KIAA1024Q9UPX6 916 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 FLOT1O75955 427 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 ALAS1P13196 640 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 DNM2P50570 870 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 IQCEQ6IPM2 695 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 CYP26C1Q6V0L0 522 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 PDCL2Q8N4E4 241 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 AGBL3Q8NEM8 1001 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 RABGAP1Q9Y3P9 1069 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 USP17L15C9J2P7 530 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 USP17L13C9JLJ4 530 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 USP17L11C9JVI0 530 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 USP17L18D6R9N7 530 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 USP17L22D6RA61 530 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 USP17L17D6RBQ6 530 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 USP17L19D6RCP7 530 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 USP17L20D6RJB6 530 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 ACTN4O43707 911 aaKnown RBP12.38□□□□□ -0.43
TRIM3-211ENST00000532542 USP17L24Q0WX57 530 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 KMT5BQ4FZB7 885 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 FAM26FQ5R3K3 315 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 WDR78Q5VTH9 848 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 PPP4R3AQ6IN85 833 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 USP17L6PQ6QN14 398 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 SYT10Q6XYQ8 523 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 CCDC42Q96M95 316 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 JMJD4Q9H9V9 463 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 SLC39A2Q9NP94 309 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 HOMER2Q9NSB8 354 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 KLRG2A4D1S0 409 aaPredicted RBP12.38□□□□□ -0.43
TRIM3-211ENST00000532542 ARHGEF35A5YM69 484 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 NDUFB10O96000 172 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 ARHGAP27Q6ZUM4 889 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 POTEDQ86YR6 584 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 CERS5Q8N5B7 392 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 SPAG5Q96R06 1193 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 IDI2Q9BXS1 227 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 DDX4Q9NQI0 724 aaKnown RBP12.38□□□□□ -0.43
TRIM3-211ENST00000532542 PANK4Q9NVE7 773 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 ROBO3Q96MS0 1386 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 CASP1P29466 404 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 USP11P51784 963 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 COPB1P53618 953 aaKnown RBP12.38□□□□□ -0.43
TRIM3-211ENST00000532542 ADKP55263 362 aaKnown RBP12.38□□□□□ -0.43
TRIM3-211ENST00000532542 PROM2Q8N271 834 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 RIOX1Q9H6W3 641 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 PSDA5PKW4 1024 aaPredicted RBP12.38□□□□□ -0.43
TRIM3-211ENST00000532542 TMEM132AQ24JP5 1023 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 P2RX5Q93086 422 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 PKD2L1Q9P0L9 805 aa12.38□□□□□ -0.43
TRIM3-211ENST00000532542 ZBTB12Q9Y330 459 aaPredicted RBP12.38□□□□□ -0.43
TRIM3-211ENST00000532542 STX10O60499 249 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 SLU7O95391 586 aaKnown RBP12.37□□□□□ -0.43
TRIM3-211ENST00000532542 SHMT1P34896 483 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 PDIA5Q14554 519 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 MCM6Q14566 821 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 FAM83BQ5T0W9 1011 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 CCDC181Q5TID7 509 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 TPH2Q8IWU9 490 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 PRMT6Q96LA8 375 aaPredicted RBP12.37□□□□□ -0.43
TRIM3-211ENST00000532542 TACC3Q9Y6A5 838 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 COL1A1P02452 1464 aaPredicted RBP12.37□□□□□ -0.43
TRIM3-211ENST00000532542 ANKRD36CQ5JPF3 1778 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 CALUO43852 315 aaPredicted RBP12.37□□□□□ -0.43
TRIM3-211ENST00000532542 CCNE1P24864 410 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 RAD51AP2Q09MP3 1159 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 FUT2Q10981 343 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 ZNF341Q9BYN7 854 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 FEM1BQ9UK73 627 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 BAZ2BQ9UIF8 2168 aaKnown RBP12.37□□□□□ -0.43
TRIM3-211ENST00000532542 TDP2O95551 362 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 GNA14O95837 355 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 ARHGAP4P98171 946 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 PSMD2Q13200 908 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 GOLGA6L1Q8N7Z2 621 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 ACBD3Q9H3P7 528 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 TBC1D7Q9P0N9 293 aa12.37□□□□□ -0.43
TRIM3-211ENST00000532542 PP2D1A8MPX8 630 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 KRT86O43790 486 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 DKC1O60832 514 aaKnown RBP eCLIP12.36□□□□□ -0.43
TRIM3-211ENST00000532542 MYCLP12524 364 aaPredicted RBP12.36□□□□□ -0.43
TRIM3-211ENST00000532542 KRT13P13646 458 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 LRCH2Q5VUJ6 765 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 MYRIPQ8NFW9 859 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 ALS2CR12Q96Q35 445 aa12.36□□□□□ -0.43
TRIM3-211ENST00000532542 WDR11Q9BZH6 1224 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms