RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 DIS3L2Q8IYB7 885 aaKnown RBP18.67■□□□□ 0.58
LSM1-204ENST00000522515 BLIDQ8IZY5 108 aa18.67■□□□□ 0.58
LSM1-204ENST00000522515 ANKRD35Q8N283 1001 aa18.67■□□□□ 0.58
LSM1-204ENST00000522515 DAGLBQ8NCG7 672 aa18.67■□□□□ 0.58
LSM1-204ENST00000522515 RASGRP4Q8TDF6 673 aa18.67■□□□□ 0.58
LSM1-204ENST00000522515 BTBD18B2RXH4 712 aa18.66■□□□□ 0.58
LSM1-204ENST00000522515 PIK3CDO00329 1044 aa18.66■□□□□ 0.58
LSM1-204ENST00000522515 LACTBP83111 547 aaPredicted RBP18.66■□□□□ 0.58
LSM1-204ENST00000522515 PKP1Q13835 747 aa18.66■□□□□ 0.58
LSM1-204ENST00000522515 BAATQ14032 418 aaPredicted RBP18.66■□□□□ 0.58
LSM1-204ENST00000522515 SLC30A10Q6XR72 485 aa18.66■□□□□ 0.58
LSM1-204ENST00000522515 JMYQ8N9B5 988 aa18.66■□□□□ 0.58
LSM1-204ENST00000522515 MMP19Q99542 508 aa18.66■□□□□ 0.58
LSM1-204ENST00000522515 ARHGAP39Q9C0H5 1083 aa18.66■□□□□ 0.58
LSM1-204ENST00000522515 GLT8D2Q9H1C3 349 aa18.66■□□□□ 0.58
LSM1-204ENST00000522515 TMEM260Q9NX78 707 aa18.66■□□□□ 0.58
LSM1-204ENST00000522515 CYP39A1Q9NYL5 469 aa18.66■□□□□ 0.58
LSM1-204ENST00000522515 BIN2Q9UBW5 565 aaPredicted RBP18.66■□□□□ 0.58
LSM1-204ENST00000522515 ZSWIM8A7E2V4 1837 aa18.65■□□□□ 0.58
LSM1-204ENST00000522515 M0R2N6 131 aa18.65■□□□□ 0.58
LSM1-204ENST00000522515 FCER1AP12319 257 aa18.65■□□□□ 0.58
LSM1-204ENST00000522515 KRT2P35908 639 aa18.65■□□□□ 0.58
LSM1-204ENST00000522515 CLK2P49760 499 aaKnown RBP18.65■□□□□ 0.58
LSM1-204ENST00000522515 NR5A1Q13285 461 aa18.65■□□□□ 0.58
LSM1-204ENST00000522515 KCTD2Q14681 263 aa18.65■□□□□ 0.58
LSM1-204ENST00000522515 PLEKHH3Q7Z736 793 aa18.65■□□□□ 0.58
LSM1-204ENST00000522515 REXO1Q8N1G1 1221 aaKnown RBP18.65■□□□□ 0.58
LSM1-204ENST00000522515 BICD2Q8TD16 824 aa18.65■□□□□ 0.58
LSM1-204ENST00000522515 COL20A1Q9P218 1284 aa18.65■□□□□ 0.58
LSM1-204ENST00000522515 MTMR6Q9Y217 621 aa18.65■□□□□ 0.58
LSM1-204ENST00000522515 IVNS1ABPQ9Y6Y0 642 aa18.65■□□□□ 0.58
LSM1-204ENST00000522515 PLXNB2O15031 1838 aa18.65■□□□□ 0.58
LSM1-204ENST00000522515 STRNO43815 780 aa18.64■□□□□ 0.58
LSM1-204ENST00000522515 PTPREP23469 700 aa18.64■□□□□ 0.58
LSM1-204ENST00000522515 CAP1Q01518 475 aa18.64■□□□□ 0.58
LSM1-204ENST00000522515 SAFBQ15424 915 aaKnown RBP eCLIP18.64■□□□□ 0.58
LSM1-204ENST00000522515 JAKMIP3Q5VZ66 844 aa18.64■□□□□ 0.58
LSM1-204ENST00000522515 SAMD3Q8N6K7 520 aa18.64■□□□□ 0.58
LSM1-204ENST00000522515 SYTL5Q8TDW5 730 aaPredicted RBP18.64■□□□□ 0.58
LSM1-204ENST00000522515 PURBQ96QR8 312 aaKnown RBP18.64■□□□□ 0.58
LSM1-204ENST00000522515 BRMS1Q9HCU9 246 aa18.64■□□□□ 0.58
LSM1-204ENST00000522515 MAP3K20Q9NYL2 800 aaKnown RBP18.64■□□□□ 0.58
LSM1-204ENST00000522515 PCDHA6Q9UN73 950 aa18.64■□□□□ 0.58
LSM1-204ENST00000522515 PCDHA8Q9Y5H6 950 aa18.64■□□□□ 0.58
LSM1-204ENST00000522515 PFASO15067 1338 aa18.64■□□□□ 0.57
LSM1-204ENST00000522515 KIF28PB7ZC32 967 aa18.64■□□□□ 0.57
LSM1-204ENST00000522515 PGK2P07205 417 aa18.64■□□□□ 0.57
LSM1-204ENST00000522515 PSMC4P43686 418 aa18.64■□□□□ 0.57
LSM1-204ENST00000522515 NOM1Q5C9Z4 860 aaKnown RBP18.64■□□□□ 0.57
LSM1-204ENST00000522515 MCTP1Q6DN14 999 aa18.64■□□□□ 0.57
LSM1-204ENST00000522515 FCHSD1Q86WN1 690 aa18.64■□□□□ 0.57
LSM1-204ENST00000522515 ABRAQ8N0Z2 381 aa18.64■□□□□ 0.57
LSM1-204ENST00000522515 TNFRSF25Q93038 417 aa18.64■□□□□ 0.57
LSM1-204ENST00000522515 PGBD1Q96JS3 809 aa18.64■□□□□ 0.57
LSM1-204ENST00000522515 TRIM47Q96LD4 638 aa18.64■□□□□ 0.57
LSM1-204ENST00000522515 MAF1Q9H063 256 aa18.64■□□□□ 0.57
LSM1-204ENST00000522515 MGAMO43451 1857 aa18.63■□□□□ 0.57
LSM1-204ENST00000522515 TNPO2O14787 897 aaKnown RBP18.63■□□□□ 0.57
LSM1-204ENST00000522515 ADORA2AP29274 412 aa18.63■□□□□ 0.57
LSM1-204ENST00000522515 CNTN2Q02246 1040 aa18.63■□□□□ 0.57
LSM1-204ENST00000522515 GRB14Q14449 540 aa18.63■□□□□ 0.57
LSM1-204ENST00000522515 FERMT3Q86UX7 667 aa18.63■□□□□ 0.57
LSM1-204ENST00000522515 TEX2Q8IWB9 1127 aa18.63■□□□□ 0.57
LSM1-204ENST00000522515 ZNF296Q8WUU4 475 aaPredicted RBP18.63■□□□□ 0.57
LSM1-204ENST00000522515 FOXP1Q9H334 677 aaPredicted RBP18.63■□□□□ 0.57
LSM1-204ENST00000522515 LCTP09848 1927 aa18.62■□□□□ 0.57
LSM1-204ENST00000522515 DNAJC25-GNG10A0A024R161 153 aa18.62■□□□□ 0.57
LSM1-204ENST00000522515 FKTNO75072 461 aa18.62■□□□□ 0.57
LSM1-204ENST00000522515 PDIA4P13667 645 aaKnown RBP18.62■□□□□ 0.57
LSM1-204ENST00000522515 U2AF2P26368 475 aaKnown RBP eCLIP18.62■□□□□ 0.572e-7■■■□□ 15.9
LSM1-204ENST00000522515 FCGRTP55899 365 aa18.62■□□□□ 0.57
LSM1-204ENST00000522515 EARS2Q5JPH6 523 aaKnown RBP18.62■□□□□ 0.57
LSM1-204ENST00000522515 MORN1Q5T089 497 aa18.62■□□□□ 0.57
LSM1-204ENST00000522515 CD99L2Q8TCZ2 262 aa18.62■□□□□ 0.57
LSM1-204ENST00000522515 TAAR1Q96RJ0 339 aa18.62■□□□□ 0.57
LSM1-204ENST00000522515 ZDHHC9Q9Y397 364 aa18.62■□□□□ 0.57
LSM1-204ENST00000522515 ZNFX1Q9P2E3 1918 aaKnown RBP18.62■□□□□ 0.57
LSM1-204ENST00000522515 SLC15A5A6NIM6 579 aa18.61■□□□□ 0.57
LSM1-204ENST00000522515 SPDYE3A6NKU9 549 aa18.61■□□□□ 0.57
LSM1-204ENST00000522515 POTEB2H3BUK9 544 aa18.61■□□□□ 0.57
LSM1-204ENST00000522515 COBLO75128 1261 aa18.61■□□□□ 0.57
LSM1-204ENST00000522515 ZSCAN22P10073 491 aaPredicted RBP18.61■□□□□ 0.57
LSM1-204ENST00000522515 AP3B2Q13367 1082 aa18.61■□□□□ 0.57
LSM1-204ENST00000522515 GNL2Q13823 731 aaKnown RBP18.61■□□□□ 0.57
LSM1-204ENST00000522515 KIF22Q14807 665 aa18.61■□□□□ 0.57
LSM1-204ENST00000522515 FOXD4L5Q5VV16 416 aaPredicted RBP18.61■□□□□ 0.57
LSM1-204ENST00000522515 FAM133AQ8N9E0 248 aa18.61■□□□□ 0.57
LSM1-204ENST00000522515 FOXD4L4Q8WXT5 416 aaPredicted RBP18.61■□□□□ 0.57
LSM1-204ENST00000522515 DOCK3Q8IZD9 2030 aa18.6■□□□□ 0.57
LSM1-204ENST00000522515 FAM205CA6NFA0 338 aa18.6■□□□□ 0.57
LSM1-204ENST00000522515 BRD1O95696 1058 aa18.6■□□□□ 0.57
LSM1-204ENST00000522515 FOSP01100 380 aaPredicted RBP18.6■□□□□ 0.57
LSM1-204ENST00000522515 PIK3AP1Q6ZUJ8 805 aa18.6■□□□□ 0.57
LSM1-204ENST00000522515 NOSTRINQ8IVI9 506 aa18.6■□□□□ 0.57
LSM1-204ENST00000522515 ANO3Q9BYT9 981 aa18.6■□□□□ 0.57
LSM1-204ENST00000522515 GJD2Q9UKL4 321 aa18.6■□□□□ 0.57
LSM1-204ENST00000522515 ASTN1O14525 1302 aa18.6■□□□□ 0.57
LSM1-204ENST00000522515 ZNF236Q9UL36 1845 aa18.6■□□□□ 0.57
LSM1-204ENST00000522515 SOWAHBA6NEL2 793 aa18.59■□□□□ 0.57
LSM1-204ENST00000522515 ZNF792Q3KQV3 632 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms