RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 DCP1AQ9NPI6 582 aaPredicted RBP17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 GCNT3O95395 438 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 MMP10P09238 476 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 TRIM31Q9BZY9 425 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 DCAF8L1A6NGE4 600 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 CTNNA2P26232 953 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 CYP4A11Q02928 519 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 GALNT17Q6IS24 598 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 OXER1Q8TDS5 423 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 CNKSR1Q969H4 720 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 LRRC45Q96CN5 670 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 NUP58Q9BVL2 599 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 PICK1Q9NRD5 415 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 GDF11O95390 407 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 PLA2G4AP47712 749 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 CACNB3P54284 484 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 GPBP1Q86WP2 473 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 TBCKQ8TEA7 893 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 GSDMAQ96QA5 445 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 PLA2G12BQ9BX93 195 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 MRPL44Q9H9J2 332 aaKnown RBP17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 GCKP35557 465 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 CDK8P49336 464 aa17.98■□□□□ 0.47
CCDC88B-209ENST00000494080 HARSP12081 509 aaKnown RBP17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 DESP17661 470 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 TRAPPC10P48553 1259 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 LACTBP83111 547 aaPredicted RBP17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 LRCH2Q5VUJ6 765 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 RRAGAQ7L523 313 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 ZNF34Q8IZ26 560 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 RDH13Q8NBN7 331 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 DDX25Q9UHL0 483 aaKnown RBP17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 MAN1B1Q9UKM7 699 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 CLEC11AQ9Y240 323 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 E2F5Q15329 346 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 ABCB5Q2M3G0 1257 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 FBXO11Q86XK2 927 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 FMNL3Q8IVF7 1028 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 TRIM58Q8NG06 486 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 IRX2Q9BZI1 471 aaPredicted RBP17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 SRPRBQ9Y5M8 271 aaKnown RBP17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 KRT71Q3SY84 523 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 CCDC25Q86WR0 208 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 ENOX1Q8TC92 643 aaKnown RBP17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 NT5C3AQ9H0P0 336 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 PCDHB13Q9Y5F0 798 aa17.97■□□□□ 0.47
CCDC88B-209ENST00000494080 CASP1P29466 404 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 GJC1P36383 396 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 PPP2R5AQ15172 486 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 SPATS2Q86XZ4 545 aaKnown RBP17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 CSRNP1Q96S65 589 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 DNAJC5Q9H3Z4 198 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 MYO1AQ9UBC5 1043 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 FAM169AQ9Y6X4 670 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 ANKRD13CQ8N6S4 541 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 ODF2LQ9ULJ1 636 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 TTLL1O95922 423 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 ERCC5P28715 1186 aaPredicted RBP17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 ITPK1Q13572 414 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 PPP1R7Q15435 360 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 TMTC3Q6ZXV5 915 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 CCDC84Q86UT8 332 aaPredicted RBP17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 CD209Q9NNX6 404 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 CPSF2Q9P2I0 782 aaKnown RBP17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 MRFAP1Q9Y605 127 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 MEGF6O75095 1541 aa17.96■□□□□ 0.47
CCDC88B-209ENST00000494080 A0A1W2PRG0 241 aa17.96■□□□□ 0.46
CCDC88B-209ENST00000494080 PEX19P40855 299 aa17.96■□□□□ 0.46
CCDC88B-209ENST00000494080 CACNA2D3Q8IZS8 1091 aa17.96■□□□□ 0.46
CCDC88B-209ENST00000494080 TACO1Q9BSH4 297 aaKnown RBP17.96■□□□□ 0.46
CCDC88B-209ENST00000494080 KCNK9Q9NPC2 374 aa17.96■□□□□ 0.46
CCDC88B-209ENST00000494080 UBN2Q6ZU65 1347 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 CEP104O60308 925 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 GAS7O60861 476 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 RPSAP08865 295 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 CHURC1Q8WUH1 139 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 BCS1LQ9Y276 419 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 FHOD1Q9Y613 1164 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 PXDNQ92626 1479 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 H7C1D1 291 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 CAMTA2O94983 1202 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 ALX1Q15699 326 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 MYOCDQ8IZQ8 938 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 COPB1P53618 953 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 NFIXQ14938 502 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 DGKHQ86XP1 1220 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 LMBR1Q8WVP7 490 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 DPF2Q92785 391 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 SWAP70Q9UH65 585 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 AFF2P51816 1311 aa17.95■□□□□ 0.46
CCDC88B-209ENST00000494080 KIF28PB7ZC32 967 aa17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 SLC9C1Q4G0N8 1177 aa17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 CCDC17Q96LX7 622 aa17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 STMN4Q9H169 189 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 ALDH8A1Q9H2A2 487 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 RASAL2Q9UJF2 1139 aa17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 SALL3Q9BXA9 1300 aa17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 MYOM1P52179 1685 aa17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 RAD17O75943 681 aa17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 HYOU1Q9Y4L1 999 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms