RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 TLE2Q04725 743 aa19.32■□□□□ 0.68
TRIM54-203ENST00000485306 CDC37Q16543 378 aaPredicted RBP19.32■□□□□ 0.68
TRIM54-203ENST00000485306 USH1GQ495M9 461 aa19.32■□□□□ 0.68
TRIM54-203ENST00000485306 CCSAPQ6IQ19 270 aaPredicted RBP19.32■□□□□ 0.68
TRIM54-203ENST00000485306 EEPD1Q7L9B9 569 aa19.32■□□□□ 0.68
TRIM54-203ENST00000485306 RGS22Q8NE09 1264 aa19.32■□□□□ 0.68
TRIM54-203ENST00000485306 MORC4Q8TE76 937 aa19.32■□□□□ 0.68
TRIM54-203ENST00000485306 VAT1LQ9HCJ6 419 aa19.32■□□□□ 0.68
TRIM54-203ENST00000485306 RANBP2P49792 3224 aaKnown RBP19.32■□□□□ 0.68
TRIM54-203ENST00000485306 ASTN1O14525 1302 aa19.31■□□□□ 0.68
TRIM54-203ENST00000485306 ELP1O95163 1332 aa19.31■□□□□ 0.68
TRIM54-203ENST00000485306 ABCB11O95342 1321 aa19.31■□□□□ 0.68
TRIM54-203ENST00000485306 SLC27A2O14975 620 aa19.31■□□□□ 0.68
TRIM54-203ENST00000485306 ADCY6O43306 1168 aa19.31■□□□□ 0.68
TRIM54-203ENST00000485306 ASGR1P07306 291 aa19.31■□□□□ 0.68
TRIM54-203ENST00000485306 ANAPC15P60006 121 aa19.31■□□□□ 0.68
TRIM54-203ENST00000485306 RPS6P62753 249 aaKnown RBP19.31■□□□□ 0.68
TRIM54-203ENST00000485306 TSGA10IPQ3SY00 556 aa19.31■□□□□ 0.68
TRIM54-203ENST00000485306 CREB3L3Q68CJ9 461 aa19.31■□□□□ 0.68
TRIM54-203ENST00000485306 POTEDQ86YR6 584 aa19.31■□□□□ 0.68
TRIM54-203ENST00000485306 MB21D2Q8IYB1 491 aaPredicted RBP19.31■□□□□ 0.68
TRIM54-203ENST00000485306 DNERQ8NFT8 737 aa19.31■□□□□ 0.68
TRIM54-203ENST00000485306 CPVLQ9H3G5 476 aa19.31■□□□□ 0.68
TRIM54-203ENST00000485306 Q9Y3F1 56 aa19.31■□□□□ 0.68
TRIM54-203ENST00000485306 DNAH12Q6ZR08 3092 aa19.31■□□□□ 0.68
TRIM54-203ENST00000485306 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.3■□□□□ 0.68
TRIM54-203ENST00000485306 DCDC2CA8MYV0 355 aa19.3■□□□□ 0.68
TRIM54-203ENST00000485306 ZEB2O60315 1214 aa19.3■□□□□ 0.68
TRIM54-203ENST00000485306 ANTXR2P58335 489 aa19.3■□□□□ 0.68
TRIM54-203ENST00000485306 NKX3-2P78367 333 aa19.3■□□□□ 0.68
TRIM54-203ENST00000485306 KRT32Q14532 448 aa19.3■□□□□ 0.68
TRIM54-203ENST00000485306 TAPT1Q6NXT6 567 aa19.3■□□□□ 0.68
TRIM54-203ENST00000485306 CHST3Q7LGC8 479 aa19.3■□□□□ 0.68
TRIM54-203ENST00000485306 FBXO11Q86XK2 927 aa19.3■□□□□ 0.68
TRIM54-203ENST00000485306 MCF2L2Q86YR7 1114 aa19.3■□□□□ 0.68
TRIM54-203ENST00000485306 FBXO16Q8IX29 292 aaPredicted RBP19.3■□□□□ 0.68
TRIM54-203ENST00000485306 TOX2Q96NM4 488 aa19.3■□□□□ 0.68
TRIM54-203ENST00000485306 PURBQ96QR8 312 aaKnown RBP19.3■□□□□ 0.68
TRIM54-203ENST00000485306 MYH6P13533 1939 aa19.29■□□□□ 0.68
TRIM54-203ENST00000485306 MROH7Q68CQ1 1323 aa19.29■□□□□ 0.68
TRIM54-203ENST00000485306 MYADML2A6NDP7 307 aa19.29■□□□□ 0.68
TRIM54-203ENST00000485306 KLRF2D3W0D1 207 aa19.29■□□□□ 0.68
TRIM54-203ENST00000485306 DYNC1LI2O43237 492 aaPredicted RBP19.29■□□□□ 0.68
TRIM54-203ENST00000485306 PQBP1O60828 265 aaKnown RBP19.29■□□□□ 0.68
TRIM54-203ENST00000485306 CLTBP09497 229 aa19.29■□□□□ 0.68
TRIM54-203ENST00000485306 SMPD1P17405 629 aa19.29■□□□□ 0.68
TRIM54-203ENST00000485306 PDE4DQ08499 809 aa19.29■□□□□ 0.68
TRIM54-203ENST00000485306 WTAPQ15007 396 aa19.29■□□□□ 0.68
TRIM54-203ENST00000485306 SLC30A10Q6XR72 485 aa19.29■□□□□ 0.68
TRIM54-203ENST00000485306 TLK2Q86UE8 772 aa19.29■□□□□ 0.68
TRIM54-203ENST00000485306 C22orf23Q9BZE7 217 aa19.29■□□□□ 0.68
TRIM54-203ENST00000485306 JMJD4Q9H9V9 463 aa19.29■□□□□ 0.68
TRIM54-203ENST00000485306 PDLIM7Q9NR12 457 aa19.29■□□□□ 0.68
TRIM54-203ENST00000485306 PDGFCQ9NRA1 345 aa19.29■□□□□ 0.68
TRIM54-203ENST00000485306 GNEQ9Y223 722 aaKnown RBP19.29■□□□□ 0.68
TRIM54-203ENST00000485306 MRPL11Q9Y3B7 192 aaKnown RBP19.29■□□□□ 0.68
TRIM54-203ENST00000485306 LCTP09848 1927 aa19.28■□□□□ 0.68
TRIM54-203ENST00000485306 CABYRO75952 493 aa19.28■□□□□ 0.68
TRIM54-203ENST00000485306 RBM25P49756 843 aaKnown RBP19.28■□□□□ 0.68
TRIM54-203ENST00000485306 QRICH1Q2TAL8 776 aa19.28■□□□□ 0.68
TRIM54-203ENST00000485306 LRIT3Q3SXY7 679 aa19.28■□□□□ 0.68
TRIM54-203ENST00000485306 ANKRD33Q7Z3H0 272 aa19.28■□□□□ 0.68
TRIM54-203ENST00000485306 IL17RAQ96F46 866 aa19.28■□□□□ 0.68
TRIM54-203ENST00000485306 SENP2Q9HC62 589 aa19.28■□□□□ 0.68
TRIM54-203ENST00000485306 DDX49Q9Y6V7 483 aaKnown RBP19.28■□□□□ 0.68
TRIM54-203ENST00000485306 A0A0U1RQG5 324 aaPredicted RBP19.27■□□□□ 0.68
TRIM54-203ENST00000485306 PALM3A6NDB9 673 aaPredicted RBP19.27■□□□□ 0.68
TRIM54-203ENST00000485306 IRX5P78411 483 aaPredicted RBP19.27■□□□□ 0.68
TRIM54-203ENST00000485306 BEX3Q00994 111 aa19.27■□□□□ 0.68
TRIM54-203ENST00000485306 TRAF1Q13077 416 aa19.27■□□□□ 0.68
TRIM54-203ENST00000485306 FSCN1Q16658 493 aaKnown RBP19.27■□□□□ 0.68
TRIM54-203ENST00000485306 DUSP28Q4G0W2 176 aa19.27■□□□□ 0.68
TRIM54-203ENST00000485306 TMEM67Q5HYA8 995 aa19.27■□□□□ 0.68
TRIM54-203ENST00000485306 STAG2Q8N3U4 1231 aa19.27■□□□□ 0.68
TRIM54-203ENST00000485306 AMNQ9BXJ7 453 aa19.27■□□□□ 0.68
TRIM54-203ENST00000485306 WDR11Q9BZH6 1224 aa19.27■□□□□ 0.68
TRIM54-203ENST00000485306 TMEM39AQ9NV64 488 aa19.27■□□□□ 0.68
TRIM54-203ENST00000485306 MAD2L2Q9UI95 211 aa19.27■□□□□ 0.68
TRIM54-203ENST00000485306 TRIM43BA6NCK2 446 aa19.26■□□□□ 0.67
TRIM54-203ENST00000485306 CTAGE5O15320 804 aa19.26■□□□□ 0.67
TRIM54-203ENST00000485306 RAG1P15918 1043 aa19.26■□□□□ 0.67
TRIM54-203ENST00000485306 SH3RF1Q7Z6J0 888 aa19.26■□□□□ 0.67
TRIM54-203ENST00000485306 CATIPQ7Z7H3 387 aa19.26■□□□□ 0.67
TRIM54-203ENST00000485306 IL27Q8NEV9 243 aa19.26■□□□□ 0.67
TRIM54-203ENST00000485306 IGDCC4Q8TDY8 1250 aa19.26■□□□□ 0.67
TRIM54-203ENST00000485306 BADQ92934 168 aa19.26■□□□□ 0.67
TRIM54-203ENST00000485306 TRIM43Q96BQ3 446 aaPredicted RBP19.26■□□□□ 0.67
TRIM54-203ENST00000485306 MTA3Q9BTC8 594 aa19.26■□□□□ 0.67
TRIM54-203ENST00000485306 SEZ6LQ9BYH1 1024 aa19.26■□□□□ 0.67
TRIM54-203ENST00000485306 RBM47A0AV96 593 aaKnown RBP19.25■□□□□ 0.67
TRIM54-203ENST00000485306 ARVCFO00192 962 aa19.25■□□□□ 0.67
TRIM54-203ENST00000485306 SOX1O00570 391 aaPredicted RBP19.25■□□□□ 0.67
TRIM54-203ENST00000485306 KIAA0355O15063 1070 aa19.25■□□□□ 0.67
TRIM54-203ENST00000485306 PRC1O43663 620 aa19.25■□□□□ 0.67
TRIM54-203ENST00000485306 PSMA5P28066 241 aa19.25■□□□□ 0.67
TRIM54-203ENST00000485306 MCM5P33992 734 aa19.25■□□□□ 0.67
TRIM54-203ENST00000485306 CDK7P50613 346 aa19.25■□□□□ 0.67
TRIM54-203ENST00000485306 GRM4Q14833 912 aa19.25■□□□□ 0.67
TRIM54-203ENST00000485306 GPR153Q6NV75 609 aa19.25■□□□□ 0.67
TRIM54-203ENST00000485306 NSUN6Q8TEA1 469 aaKnown RBP19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms