RNA–Protein interactions for RNA: ENST00000480563.1

TTC28-206, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 407 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-206ENST00000480563 MYL3P08590 195 aa13.43□□□□□ -0.26
TTC28-206ENST00000480563 RFC2P35250 354 aa13.43□□□□□ -0.26
TTC28-206ENST00000480563 PURAQ00577 322 aaKnown RBP13.43□□□□□ -0.26
TTC28-206ENST00000480563 TFAP4Q01664 338 aa13.43□□□□□ -0.26
TTC28-206ENST00000480563 TAP1Q03518 808 aa13.43□□□□□ -0.26
TTC28-206ENST00000480563 DUSP28Q4G0W2 176 aa13.43□□□□□ -0.26
TTC28-206ENST00000480563 NSMFQ6X4W1 530 aa13.43□□□□□ -0.26
TTC28-206ENST00000480563 IFNL3Q8IZI9 196 aa13.43□□□□□ -0.26
TTC28-206ENST00000480563 MORC4Q8TE76 937 aa13.43□□□□□ -0.26
TTC28-206ENST00000480563 WDR11Q9BZH6 1224 aa13.43□□□□□ -0.26
TTC28-206ENST00000480563 LRRCC1Q9C099 1032 aa13.43□□□□□ -0.26
TTC28-206ENST00000480563 FTOQ9C0B1 505 aaKnown RBP eCLIP13.43□□□□□ -0.26
TTC28-206ENST00000480563 GPHNQ9NQX3 736 aaPredicted RBP13.43□□□□□ -0.26
TTC28-206ENST00000480563 ECHDC1Q9NTX5 307 aa13.43□□□□□ -0.26
TTC28-206ENST00000480563 DDX19BQ9UMR2 479 aa13.43□□□□□ -0.26
TTC28-206ENST00000480563 KIF28PB7ZC32 967 aa13.42□□□□□ -0.26
TTC28-206ENST00000480563 SMARCA5O60264 1052 aaPredicted RBP13.42□□□□□ -0.26
TTC28-206ENST00000480563 ARHGEF15O94989 841 aa13.42□□□□□ -0.26
TTC28-206ENST00000480563 IQCF3P0C7M6 154 aa13.42□□□□□ -0.26
TTC28-206ENST00000480563 CPT1AP50416 773 aa13.42□□□□□ -0.26
TTC28-206ENST00000480563 HNRNPUQ00839 825 aaKnown RBP eCLIP13.42□□□□□ -0.26
TTC28-206ENST00000480563 PDE4BQ07343 736 aa13.42□□□□□ -0.26
TTC28-206ENST00000480563 GRB10Q13322 594 aa13.42□□□□□ -0.26
TTC28-206ENST00000480563 FAM47CQ5HY64 1035 aa13.42□□□□□ -0.26
TTC28-206ENST00000480563 RCSD1Q6JBY9 416 aa13.42□□□□□ -0.26
TTC28-206ENST00000480563 KCTD1Q719H9 257 aa13.42□□□□□ -0.26
TTC28-206ENST00000480563 HERC6Q8IVU3 1022 aa13.42□□□□□ -0.26
TTC28-206ENST00000480563 RETREG2Q8NC44 543 aa13.42□□□□□ -0.26
TTC28-206ENST00000480563 MTG1Q9BT17 334 aaPredicted RBP13.42□□□□□ -0.26
TTC28-206ENST00000480563 PRR12Q9ULL5 1215 aa13.42□□□□□ -0.26
TTC28-206ENST00000480563 REV3LO60673 3130 aa13.42□□□□□ -0.26
TTC28-206ENST00000480563 XIRP2A4UGR9 3374 aa13.41□□□□□ -0.26
TTC28-206ENST00000480563 M0R2C6 588 aa13.41□□□□□ -0.26
TTC28-206ENST00000480563 GPR37L1O60883 481 aa13.41□□□□□ -0.26
TTC28-206ENST00000480563 ZFYP08048 801 aaPredicted RBP13.41□□□□□ -0.26
TTC28-206ENST00000480563 SLC3A2P08195 630 aaKnown RBP13.41□□□□□ -0.26
TTC28-206ENST00000480563 BAATQ14032 418 aaPredicted RBP13.41□□□□□ -0.26
TTC28-206ENST00000480563 NBPF20Q3BBV1 942 aa13.41□□□□□ -0.26
TTC28-206ENST00000480563 OR6J1Q8NGC5 347 aa13.41□□□□□ -0.26
TTC28-206ENST00000480563 PPP1R13LQ8WUF5 828 aa13.41□□□□□ -0.26
TTC28-206ENST00000480563 KHSRPQ92945 711 aaKnown RBP eCLIP13.41□□□□□ -0.26
TTC28-206ENST00000480563 NACAP1Q9BZK3 213 aa13.41□□□□□ -0.26
TTC28-206ENST00000480563 ADD3Q9UEY8 706 aaKnown RBP13.41□□□□□ -0.26
TTC28-206ENST00000480563 CCPG1Q9ULG6 757 aa13.41□□□□□ -0.26
TTC28-206ENST00000480563 PLIN4Q96Q06 1357 aa13.41□□□□□ -0.26
TTC28-206ENST00000480563 RBM47A0AV96 593 aaKnown RBP13.4□□□□□ -0.26
TTC28-206ENST00000480563 PITPNM1O00562 1244 aa13.4□□□□□ -0.26
TTC28-206ENST00000480563 BRDTQ58F21 947 aaPredicted RBP13.4□□□□□ -0.26
TTC28-206ENST00000480563 SPRED2Q7Z698 418 aa13.4□□□□□ -0.26
TTC28-206ENST00000480563 C11orf16Q9NQ32 467 aa13.4□□□□□ -0.26
TTC28-206ENST00000480563 STX8Q9UNK0 236 aa13.4□□□□□ -0.26
TTC28-206ENST00000480563 MYH4Q9Y623 1939 aa13.4□□□□□ -0.26
TTC28-206ENST00000480563 FAM86C2PA6NEL3 165 aa13.39□□□□□ -0.27
TTC28-206ENST00000480563 LPXNO60711 386 aa13.39□□□□□ -0.27
TTC28-206ENST00000480563 ICAM1P05362 532 aa13.39□□□□□ -0.27
TTC28-206ENST00000480563 ALDH5A1P51649 535 aaPredicted RBP13.39□□□□□ -0.27
TTC28-206ENST00000480563 PPARAQ07869 468 aa13.39□□□□□ -0.27
TTC28-206ENST00000480563 PPP4R3BQ5MIZ7 849 aa13.39□□□□□ -0.27
TTC28-206ENST00000480563 NFRKBQ6P4R8 1299 aa13.39□□□□□ -0.27
TTC28-206ENST00000480563 CHMP4BQ9H444 224 aaKnown RBP13.39□□□□□ -0.27
TTC28-206ENST00000480563 MTMR7Q9Y216 660 aa13.39□□□□□ -0.27
TTC28-206ENST00000480563 NOD1Q9Y239 953 aa13.39□□□□□ -0.27
TTC28-206ENST00000480563 MYH7P12883 1935 aa13.39□□□□□ -0.27
TTC28-206ENST00000480563 PIEZO1Q92508 2521 aa13.38□□□□□ -0.27
TTC28-206ENST00000480563 LOC102724159A0A0B4J2E5 919 aa13.38□□□□□ -0.27
TTC28-206ENST00000480563 PI4K2BG5E9Z4 385 aa13.38□□□□□ -0.27
TTC28-206ENST00000480563 KPNA6O60684 536 aa13.38□□□□□ -0.27
TTC28-206ENST00000480563 BAIAP3O94812 1187 aa13.38□□□□□ -0.27
TTC28-206ENST00000480563 KCNJ6P48051 423 aa13.38□□□□□ -0.27
TTC28-206ENST00000480563 PTPN11Q06124 597 aaPredicted RBP13.38□□□□□ -0.27
TTC28-206ENST00000480563 BFSP2Q13515 415 aa13.38□□□□□ -0.27
TTC28-206ENST00000480563 PWP2Q15269 919 aaKnown RBP13.38□□□□□ -0.27
TTC28-206ENST00000480563 TSHZ3Q63HK5 1081 aa13.38□□□□□ -0.27
TTC28-206ENST00000480563 RASGRP2Q7LDG7 609 aa13.38□□□□□ -0.27
TTC28-206ENST00000480563 SEC62Q99442 399 aaKnown RBP13.38□□□□□ -0.27
TTC28-206ENST00000480563 NAPBQ9H115 298 aa13.38□□□□□ -0.27
TTC28-206ENST00000480563 CD320Q9NPF0 282 aa13.38□□□□□ -0.27
TTC28-206ENST00000480563 IL17RBQ9NRM6 502 aa13.38□□□□□ -0.27
TTC28-206ENST00000480563 LMCD1Q9NZU5 365 aa13.38□□□□□ -0.27
TTC28-206ENST00000480563 LRRC37A2A6NM11 1700 aa13.37□□□□□ -0.27
TTC28-206ENST00000480563 PTPDC1A2A3K4 754 aa13.37□□□□□ -0.27
TTC28-206ENST00000480563 LCHNA4D1U4 455 aa13.37□□□□□ -0.27
TTC28-206ENST00000480563 A6NJR5 290 aa13.37□□□□□ -0.27
TTC28-206ENST00000480563 TSPY2A6NKD2 308 aa13.37□□□□□ -0.27
TTC28-206ENST00000480563 NFIBO00712 420 aa13.37□□□□□ -0.27
TTC28-206ENST00000480563 NMT2O60551 498 aa13.37□□□□□ -0.27
TTC28-206ENST00000480563 SLC16A2P36021 539 aa13.37□□□□□ -0.27
TTC28-206ENST00000480563 CHMP4BP1P59074 171 aa13.37□□□□□ -0.27
TTC28-206ENST00000480563 CCDC96Q2M329 555 aa13.37□□□□□ -0.27
TTC28-206ENST00000480563 LRRFIP1Q32MZ4 808 aaKnown RBP13.37□□□□□ -0.27
TTC28-206ENST00000480563 TTBK2Q6IQ55 1244 aa13.37□□□□□ -0.27
TTC28-206ENST00000480563 GPATCH3Q96I76 525 aa13.37□□□□□ -0.27
TTC28-206ENST00000480563 ZBED2Q9BTP6 218 aa13.37□□□□□ -0.27
TTC28-206ENST00000480563 RANBP17Q9H2T7 1088 aaKnown RBP13.37□□□□□ -0.27
TTC28-206ENST00000480563 INCENPQ9NQS7 918 aa13.37□□□□□ -0.27
TTC28-206ENST00000480563 RAD50Q92878 1312 aa13.37□□□□□ -0.27
TTC28-206ENST00000480563 SCN5AQ14524 2016 aa13.36□□□□□ -0.27
TTC28-206ENST00000480563 NKRFO15226 690 aaKnown RBP eCLIP13.36□□□□□ -0.27
TTC28-206ENST00000480563 CALML3P27482 149 aa13.36□□□□□ -0.27
TTC28-206ENST00000480563 PDE4DQ08499 809 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms