RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.06□□□□□ -0.16
SYNE1-223ENST00000476519 TRIM43BA6NCK2 446 aa14.06□□□□□ -0.16
SYNE1-223ENST00000476519 PALM3A6NDB9 673 aaPredicted RBP14.06□□□□□ -0.16
SYNE1-223ENST00000476519 KLRF2D3W0D1 207 aa14.06□□□□□ -0.16
SYNE1-223ENST00000476519 E7EWF7 191 aa14.06□□□□□ -0.16
SYNE1-223ENST00000476519 SOX1O00570 391 aaPredicted RBP14.06□□□□□ -0.16
SYNE1-223ENST00000476519 IFIT3O14879 490 aaKnown RBP14.06□□□□□ -0.16
SYNE1-223ENST00000476519 DYNC1LI2O43237 492 aaPredicted RBP14.06□□□□□ -0.16
SYNE1-223ENST00000476519 PQBP1O60828 265 aaKnown RBP14.06□□□□□ -0.16
SYNE1-223ENST00000476519 EDNRBP24530 442 aa14.06□□□□□ -0.16
SYNE1-223ENST00000476519 TRAF1Q13077 416 aa14.06□□□□□ -0.16
SYNE1-223ENST00000476519 FSCN1Q16658 493 aaKnown RBP14.06□□□□□ -0.16
SYNE1-223ENST00000476519 DUSP28Q4G0W2 176 aa14.06□□□□□ -0.16
SYNE1-223ENST00000476519 EEPD1Q7L9B9 569 aa14.06□□□□□ -0.16
SYNE1-223ENST00000476519 SH3RF1Q7Z6J0 888 aa14.06□□□□□ -0.16
SYNE1-223ENST00000476519 TLK2Q86UE8 772 aa14.06□□□□□ -0.16
SYNE1-223ENST00000476519 FBXO11Q86XK2 927 aa14.06□□□□□ -0.16
SYNE1-223ENST00000476519 TRIM43Q96BQ3 446 aaPredicted RBP14.06□□□□□ -0.16
SYNE1-223ENST00000476519 CPVLQ9H3G5 476 aa14.06□□□□□ -0.16
SYNE1-223ENST00000476519 VAT1LQ9HCJ6 419 aa14.06□□□□□ -0.16
SYNE1-223ENST00000476519 TMEM39AQ9NV64 488 aa14.06□□□□□ -0.16
SYNE1-223ENST00000476519 ALPK3Q96L96 1907 aa14.05□□□□□ -0.16
SYNE1-223ENST00000476519 A0A0U1RQG5 324 aaPredicted RBP14.05□□□□□ -0.16
SYNE1-223ENST00000476519 ARVCFO00192 962 aa14.05□□□□□ -0.16
SYNE1-223ENST00000476519 DHX16O60231 1041 aaKnown RBP14.05□□□□□ -0.16
SYNE1-223ENST00000476519 PDE4DQ08499 809 aa14.05□□□□□ -0.16
SYNE1-223ENST00000476519 FAAP100Q0VG06 881 aa14.05□□□□□ -0.16
SYNE1-223ENST00000476519 QRICH1Q2TAL8 776 aa14.05□□□□□ -0.16
SYNE1-223ENST00000476519 USH1GQ495M9 461 aa14.05□□□□□ -0.16
SYNE1-223ENST00000476519 SLC30A10Q6XR72 485 aa14.05□□□□□ -0.16
SYNE1-223ENST00000476519 FBXO16Q8IX29 292 aaPredicted RBP14.05□□□□□ -0.16
SYNE1-223ENST00000476519 BADQ92934 168 aa14.05□□□□□ -0.16
SYNE1-223ENST00000476519 MTA3Q9BTC8 594 aa14.05□□□□□ -0.16
SYNE1-223ENST00000476519 WDR11Q9BZH6 1224 aa14.05□□□□□ -0.16
SYNE1-223ENST00000476519 RBM8AQ9Y5S9 174 aaKnown RBP14.05□□□□□ -0.16
SYNE1-223ENST00000476519 DDX49Q9Y6V7 483 aaKnown RBP14.05□□□□□ -0.16
SYNE1-223ENST00000476519 NKRFO15226 690 aaKnown RBP eCLIP14.04□□□□□ -0.16
SYNE1-223ENST00000476519 RAG1P15918 1043 aa14.04□□□□□ -0.16
SYNE1-223ENST00000476519 IRX5P78411 483 aaPredicted RBP14.04□□□□□ -0.16
SYNE1-223ENST00000476519 WTAPQ15007 396 aa14.04□□□□□ -0.16
SYNE1-223ENST00000476519 BMP2KLQ5H9B9 411 aa14.04□□□□□ -0.16
SYNE1-223ENST00000476519 STAG2Q8N3U4 1231 aa14.04□□□□□ -0.16
SYNE1-223ENST00000476519 SAMD3Q8N6K7 520 aa14.04□□□□□ -0.16
SYNE1-223ENST00000476519 SLC43A3Q8NBI5 491 aa14.04□□□□□ -0.16
SYNE1-223ENST00000476519 SYTL5Q8TDW5 730 aaPredicted RBP14.04□□□□□ -0.16
SYNE1-223ENST00000476519 IGDCC4Q8TDY8 1250 aa14.04□□□□□ -0.16
SYNE1-223ENST00000476519 NSUN6Q8TEA1 469 aaKnown RBP14.04□□□□□ -0.16
SYNE1-223ENST00000476519 SCFD2Q8WU76 684 aa14.04□□□□□ -0.16
SYNE1-223ENST00000476519 MTMR8Q96EF0 704 aa14.04□□□□□ -0.16
SYNE1-223ENST00000476519 LRCH3Q96II8 777 aa14.04□□□□□ -0.16
SYNE1-223ENST00000476519 IWS1Q96ST2 819 aa14.04□□□□□ -0.16
SYNE1-223ENST00000476519 AMNQ9BXJ7 453 aa14.04□□□□□ -0.16
SYNE1-223ENST00000476519 MAP3K20Q9NYL2 800 aaKnown RBP14.04□□□□□ -0.16
SYNE1-223ENST00000476519 MAD2L2Q9UI95 211 aa14.04□□□□□ -0.16
SYNE1-223ENST00000476519 PLXNA1Q9UIW2 1896 aa14.04□□□□□ -0.16
SYNE1-223ENST00000476519 ZBTB5O15062 677 aa14.03□□□□□ -0.16
SYNE1-223ENST00000476519 BEX3Q00994 111 aa14.03□□□□□ -0.16
SYNE1-223ENST00000476519 TROAPQ12815 778 aa14.03□□□□□ -0.16
SYNE1-223ENST00000476519 GRM4Q14833 912 aa14.03□□□□□ -0.16
SYNE1-223ENST00000476519 BRDTQ58F21 947 aaPredicted RBP14.03□□□□□ -0.16
SYNE1-223ENST00000476519 TMEM67Q5HYA8 995 aa14.03□□□□□ -0.16
SYNE1-223ENST00000476519 CXCL17Q6UXB2 119 aa14.03□□□□□ -0.16
SYNE1-223ENST00000476519 STOX1Q6ZVD7 989 aa14.03□□□□□ -0.16
SYNE1-223ENST00000476519 CATIPQ7Z7H3 387 aa14.03□□□□□ -0.16
SYNE1-223ENST00000476519 TMTC2Q8N394 836 aa14.03□□□□□ -0.16
SYNE1-223ENST00000476519 TBC1D5Q92609 795 aa14.03□□□□□ -0.16
SYNE1-223ENST00000476519 MAP3K14Q99558 947 aa14.03□□□□□ -0.16
SYNE1-223ENST00000476519 ESYT1Q9BSJ8 1104 aa14.03□□□□□ -0.16
SYNE1-223ENST00000476519 LSG1Q9H089 658 aaKnown RBP14.03□□□□□ -0.16
SYNE1-223ENST00000476519 RIOX1Q9H6W3 641 aa14.03□□□□□ -0.16
SYNE1-223ENST00000476519 LAMA2P24043 3122 aaKnown RBP14.03□□□□□ -0.16
SYNE1-223ENST00000476519 TLR3O15455 904 aaKnown RBP14.02□□□□□ -0.17
SYNE1-223ENST00000476519 TIMP1P01033 207 aa14.02□□□□□ -0.17
SYNE1-223ENST00000476519 ITGB8P26012 769 aa14.02□□□□□ -0.17
SYNE1-223ENST00000476519 CPT1AP50416 773 aa14.02□□□□□ -0.17
SYNE1-223ENST00000476519 GHRHRQ02643 423 aa14.02□□□□□ -0.17
SYNE1-223ENST00000476519 MB21D2Q8IYB1 491 aaPredicted RBP14.02□□□□□ -0.17
SYNE1-223ENST00000476519 RMDN3Q96TC7 470 aa14.02□□□□□ -0.17
SYNE1-223ENST00000476519 TBX21Q9UL17 535 aa14.02□□□□□ -0.17
SYNE1-223ENST00000476519 TAF6LQ9Y6J9 622 aa14.02□□□□□ -0.17
SYNE1-223ENST00000476519 FRMPD3Q5JV73 1810 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 KPNA6O60684 536 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 SMARCA1P28370 1054 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 MCM5P33992 734 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 ITGA7Q13683 1181 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 TTLL4Q14679 1199 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 PPP2R5BQ15173 497 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 NECTIN1Q15223 517 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 SHHQ15465 462 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 STXBP2Q15833 593 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 TMEM63BQ5T3F8 832 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 FAM109BQ6ICB4 259 aaPredicted RBP14.01□□□□□ -0.17
SYNE1-223ENST00000476519 CASC1Q6TDU7 716 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 CHST3Q7LGC8 479 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 FAM126BQ8IXS8 530 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 TAAR1Q96RJ0 339 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 POLR3EQ9NVU0 708 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 PCDHA1Q9Y5I3 950 aa14.01□□□□□ -0.17
SYNE1-223ENST00000476519 PNMA6FA0A0J9YX94 578 aa14□□□□□ -0.17
SYNE1-223ENST00000476519 A6NJR5 290 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms