RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.92□□□□□ -0.18
SHROOM3-202ENST00000466541 ARMCX2Q7L311 632 aa13.92□□□□□ -0.18
SHROOM3-202ENST00000466541 HEATR3Q7Z4Q2 680 aa13.92□□□□□ -0.18
SHROOM3-202ENST00000466541 MCF2L2Q86YR7 1114 aa13.92□□□□□ -0.18
SHROOM3-202ENST00000466541 GPKOWQ92917 476 aaPredicted RBP eCLIP13.92□□□□□ -0.18
SHROOM3-202ENST00000466541 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.92□□□□□ -0.18
SHROOM3-202ENST00000466541 V9GY48 417 aaPredicted RBP13.92□□□□□ -0.18
SHROOM3-202ENST00000466541 ASB14A6NK59 587 aa13.91□□□□□ -0.18
SHROOM3-202ENST00000466541 PDIA3P30101 505 aaKnown RBP13.91□□□□□ -0.18
SHROOM3-202ENST00000466541 GJA8P48165 433 aa13.91□□□□□ -0.18
SHROOM3-202ENST00000466541 NEK4P51957 841 aa13.91□□□□□ -0.18
SHROOM3-202ENST00000466541 FCHSD1Q86WN1 690 aa13.91□□□□□ -0.18
SHROOM3-202ENST00000466541 C22orf23Q9BZE7 217 aa13.91□□□□□ -0.18
SHROOM3-202ENST00000466541 FAM217BQ9NTX9 383 aaPredicted RBP13.91□□□□□ -0.18
SHROOM3-202ENST00000466541 ASTN1O14525 1302 aa13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 SYNGAP1Q96PV0 1343 aa13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 CCDC196A0A1B0GTZ2 297 aa13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 IGHA2P01877 340 aa13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 SMARCA1P28370 1054 aa13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 ALDH5A1P51649 535 aaPredicted RBP13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 TRAF1Q13077 416 aa13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 ACVR2BQ13705 512 aa13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 MAMDC4Q6UXC1 1216 aa13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 ZNF467Q7Z7K2 595 aaPredicted RBP13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 FBXO16Q8IX29 292 aaPredicted RBP13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 SYTL5Q8TDW5 730 aaPredicted RBP13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 PHKBQ93100 1093 aa13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 LENG1Q96BZ8 264 aaPredicted RBP13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 SHISA4Q96DD7 197 aa13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 TAAR1Q96RJ0 339 aa13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 AGXT2Q9BYV1 514 aa13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 UPF2Q9HAU5 1272 aaKnown RBP13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 ADD3Q9UEY8 706 aaKnown RBP13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 DDX20Q9UHI6 824 aaKnown RBP13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 FRMPD3Q5JV73 1810 aa13.9□□□□□ -0.18
SHROOM3-202ENST00000466541 CNTNAP5Q8WYK1 1306 aa13.9□□□□□ -0.19
SHROOM3-202ENST00000466541 GCOM1H8Y6P7 765 aaPredicted RBP13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 OPLAHO14841 1288 aa13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 SEPT4O43236 478 aa13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 DTNBO60941 627 aa13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 FARP2O94887 1054 aaPredicted RBP13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 POLR2MP0CAP2 368 aa13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 ZNF865P0CJ78 1059 aaPredicted RBP13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 EIF2AK2P19525 551 aaKnown RBP13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 AK2P54819 239 aa13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 AKAP17AQ02040 695 aaKnown RBP13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 PDE4DQ08499 809 aa13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 ARHGEF16Q5VV41 709 aa13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 LHX8Q68G74 356 aa13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 FBXL16Q8N461 479 aa13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 MSL3Q8N5Y2 521 aaKnown RBP13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 RGS22Q8NE09 1264 aa13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 RMDN3Q96TC7 470 aa13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 SLC26A6Q9BXS9 759 aa13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 COL20A1Q9P218 1284 aa13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 TNRC18O15417 2968 aaPredicted RBP13.89□□□□□ -0.19
SHROOM3-202ENST00000466541 CPLX1O14810 134 aa13.88□□□□□ -0.19
SHROOM3-202ENST00000466541 RARBP10826 455 aa13.88□□□□□ -0.19
SHROOM3-202ENST00000466541 MLLT1Q03111 559 aaPredicted RBP13.88□□□□□ -0.19
SHROOM3-202ENST00000466541 CCDC144BQ3MJ40 725 aa13.88□□□□□ -0.19
SHROOM3-202ENST00000466541 SMARCC2Q8TAQ2 1214 aa13.88□□□□□ -0.19
SHROOM3-202ENST00000466541 DIS3LQ8TF46 1054 aaKnown RBP13.88□□□□□ -0.19
SHROOM3-202ENST00000466541 CUL5Q93034 780 aa13.88□□□□□ -0.19
SHROOM3-202ENST00000466541 MPHOSPH6Q99547 160 aaKnown RBP13.88□□□□□ -0.19
SHROOM3-202ENST00000466541 ABHD16BQ9H3Z7 469 aa13.88□□□□□ -0.19
SHROOM3-202ENST00000466541 PDGFCQ9NRA1 345 aa13.88□□□□□ -0.19
SHROOM3-202ENST00000466541 FAM184BQ9ULE4 1060 aa13.88□□□□□ -0.19
SHROOM3-202ENST00000466541 TPCN1Q9ULQ1 816 aa13.88□□□□□ -0.19
SHROOM3-202ENST00000466541 PGK1P00558 417 aa13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 MYCLP12524 364 aaPredicted RBP13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 AKR1A1P14550 325 aa13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 HSD17B4P51659 736 aa13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 RCAN1P53805 252 aa13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 NAPAP54920 295 aa13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 FUT2Q10981 343 aa13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 PPP2R5BQ15173 497 aa13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 ANKRD1Q15327 319 aa13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 GJC2Q5T442 439 aaPredicted RBP13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 WWC2Q6AWC2 1192 aa13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 USP17L6PQ6QN14 398 aa13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 NSUN6Q8TEA1 469 aaKnown RBP13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 ZNF274Q96GC6 653 aaPredicted RBP13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 PAWRQ96IZ0 340 aaKnown RBP13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 ZFP91Q96JP5 570 aaPredicted RBP13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 CRISPLD2Q9H0B8 497 aa13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 SLKQ9H2G2 1235 aaPredicted RBP13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 PSTPIP2Q9H939 334 aa13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 NRBP1Q9UHY1 535 aa13.87□□□□□ -0.19
SHROOM3-202ENST00000466541 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.86□□□□□ -0.19
SHROOM3-202ENST00000466541 B4DLN1 442 aa13.86□□□□□ -0.19
SHROOM3-202ENST00000466541 MSCO60682 206 aa13.86□□□□□ -0.19
SHROOM3-202ENST00000466541 PTGS1P23219 599 aa13.86□□□□□ -0.19
SHROOM3-202ENST00000466541 ADCYAP1R1P41586 468 aa13.86□□□□□ -0.19
SHROOM3-202ENST00000466541 MRPL12P52815 198 aaKnown RBP13.86□□□□□ -0.19
SHROOM3-202ENST00000466541 EVCP57679 992 aa13.86□□□□□ -0.19
SHROOM3-202ENST00000466541 UBE2SQ16763 222 aa13.86□□□□□ -0.19
SHROOM3-202ENST00000466541 SEPT14Q6ZU15 432 aa13.86□□□□□ -0.19
SHROOM3-202ENST00000466541 NECAB1Q8N987 351 aa13.86□□□□□ -0.19
SHROOM3-202ENST00000466541 DNERQ8NFT8 737 aa13.86□□□□□ -0.19
SHROOM3-202ENST00000466541 XPNPEP3Q9NQH7 507 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms