RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 CABLES1Q8TDN4 633 aa8.12□□□□□ -1.11
USP48-206ENST00000464577 HDAC7Q8WUI4 952 aa8.12□□□□□ -1.11
USP48-206ENST00000464577 CCDC47Q96A33 483 aaKnown RBP8.12□□□□□ -1.11
USP48-206ENST00000464577 CNOT6LQ96LI5 555 aaKnown RBP8.12□□□□□ -1.11
USP48-206ENST00000464577 TACO1Q9BSH4 297 aaKnown RBP8.12□□□□□ -1.11
USP48-206ENST00000464577 IFIH1Q9BYX4 1025 aaKnown RBP8.12□□□□□ -1.11
USP48-206ENST00000464577 EHD4Q9H223 541 aa8.12□□□□□ -1.11
USP48-206ENST00000464577 SH3GLB2Q9NR46 395 aa8.12□□□□□ -1.11
USP48-206ENST00000464577 TRMT112Q9UI30 125 aaKnown RBP8.12□□□□□ -1.11
USP48-206ENST00000464577 PLAGL2Q9UPG8 496 aa8.12□□□□□ -1.11
USP48-206ENST00000464577 PCDHA13Q9Y5I0 950 aa8.12□□□□□ -1.11
USP48-206ENST00000464577 CAPN6Q9Y6Q1 641 aa8.12□□□□□ -1.11
USP48-206ENST00000464577 DUSP10Q9Y6W6 482 aa8.12□□□□□ -1.11
USP48-206ENST00000464577 CICQ96RK0 1608 aaPredicted RBP8.11□□□□□ -1.11
USP48-206ENST00000464577 ABCB11O95342 1321 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 LAD1O00515 517 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 NDUFAB1O14561 156 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 MEFVO15553 781 aaPredicted RBP8.11□□□□□ -1.11
USP48-206ENST00000464577 KIAA0754O94854 1291 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 IL2RBP14784 551 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 CYP7A1P22680 504 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 PAFAH1B1P43034 410 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 SETQ01105 290 aaPredicted RBP8.11□□□□□ -1.11
USP48-206ENST00000464577 CYP27A1Q02318 531 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 DDR1Q08345 913 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 PLCB4Q15147 1175 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 MIIPQ5JXC2 388 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 CCDC181Q5TID7 509 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 MIGA1Q8NAN2 632 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 SPDYE1Q8NFV5 336 aaPredicted RBP8.11□□□□□ -1.11
USP48-206ENST00000464577 HELBQ8NG08 1087 aaPredicted RBP8.11□□□□□ -1.11
USP48-206ENST00000464577 ARL8AQ96BM9 186 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 GDF3Q9NR23 364 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 TMOD3Q9NYL9 352 aa8.11□□□□□ -1.11
USP48-206ENST00000464577 COL5A2P05997 1499 aaPredicted RBP8.11□□□□□ -1.11
USP48-206ENST00000464577 ERVV-1B6SEH8 477 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 ORC4O43929 436 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 PRPHP41219 470 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 MTIF2P46199 727 aaKnown RBP8.1□□□□□ -1.11
USP48-206ENST00000464577 KLK7P49862 253 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 KIF11P52732 1056 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 PAK2Q13177 524 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 PDCLQ13371 301 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 FBXW10Q5XX13 1052 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 C8orf74Q6P047 294 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 DTHD1Q6ZMT9 781 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 ARHGAP27Q6ZUM4 889 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 IFT20Q8IY31 132 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 BLIDQ8IZY5 108 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 CABS1Q96KC9 395 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 PCMTD1Q96MG8 357 aaPredicted RBP8.1□□□□□ -1.11
USP48-206ENST00000464577 ZIM3Q96PE6 472 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 RIOK1Q9BRS2 568 aaKnown RBP8.1□□□□□ -1.11
USP48-206ENST00000464577 NOC4LQ9BVI4 516 aaKnown RBP8.1□□□□□ -1.11
USP48-206ENST00000464577 EPN3Q9H201 632 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 MLXIPQ9HAP2 919 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 LRP2BPQ9P2M1 347 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.1□□□□□ -1.11
USP48-206ENST00000464577 MOCS3O95396 460 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 HOXA7P31268 230 aaPredicted RBP8.1□□□□□ -1.11
USP48-206ENST00000464577 LSP1P33241 339 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 MNAT1P51948 309 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 NAP1L1P55209 391 aaKnown RBP8.1□□□□□ -1.11
USP48-206ENST00000464577 DRP2Q13474 957 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 CFAP58Q5T655 872 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 NFRKBQ6P4R8 1299 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 TOM1L2Q6ZVM7 507 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 ADGRA1Q86SQ6 560 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 IQCKQ8N0W5 287 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 RNF10Q8N5U6 811 aaKnown RBP8.1□□□□□ -1.11
USP48-206ENST00000464577 OTUD6BQ8N6M0 293 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 DAGLBQ8NCG7 672 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 SDR42E1Q8WUS8 393 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.1□□□□□ -1.11
USP48-206ENST00000464577 C7orf25Q9BPX7 421 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 CARD10Q9BWT7 1032 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 EDEM3Q9BZQ6 932 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 ARHGAP20Q9P2F6 1191 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 PCDHA4Q9UN74 947 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 SIK3Q9Y2K2 1263 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 SSUH2Q9Y2M2 353 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 SAMM50Q9Y512 469 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 CAPN7Q9Y6W3 813 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 NUP98P52948 1817 aa8.1□□□□□ -1.11
USP48-206ENST00000464577 LAMB1P07942 1786 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 CACNA1SQ13698 1873 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 LOC102724159A0A0B4J2E5 919 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 GRID2IPA4D2P6 1211 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 M0R2N6 131 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 KIF5BP33176 963 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 EIF4A3P38919 411 aaKnown RBP8.09□□□□□ -1.11
USP48-206ENST00000464577 UBA7P41226 1012 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 NT5C2P49902 561 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 BCAMP50895 628 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 PWP2Q15269 919 aaKnown RBP8.09□□□□□ -1.11
USP48-206ENST00000464577 PTGISQ16647 500 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 SKIDA1Q1XH10 827 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 TMEM132AQ24JP5 1023 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 CFAP221Q4G0U5 840 aa8.09□□□□□ -1.11
USP48-206ENST00000464577 NAA35Q5VZE5 725 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms