RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 NTSR2O95665 410 aa9.43□□□□□ -0.9
USP54-208ENST00000461520 GPTP24298 496 aa9.43□□□□□ -0.9
USP54-208ENST00000461520 MAP1SQ66K74 1059 aaPredicted RBP9.43□□□□□ -0.9
USP54-208ENST00000461520 RPGRQ92834 1020 aaKnown RBP9.43□□□□□ -0.9
USP54-208ENST00000461520 PSMD1Q99460 953 aa9.43□□□□□ -0.9
USP54-208ENST00000461520 KRTAP9-2Q9BYQ4 174 aa9.43□□□□□ -0.9
USP54-208ENST00000461520 ATXN3LQ9H3M9 355 aa9.43□□□□□ -0.9
USP54-208ENST00000461520 NUP98P52948 1817 aa9.42□□□□□ -0.9
USP54-208ENST00000461520 RNF123Q5XPI4 1314 aa9.42□□□□□ -0.9
USP54-208ENST00000461520 FBXO24O75426 580 aa9.42□□□□□ -0.9
USP54-208ENST00000461520 NME2P22392 152 aa9.42□□□□□ -0.9
USP54-208ENST00000461520 TTLL4Q14679 1199 aa9.42□□□□□ -0.9
USP54-208ENST00000461520 HSP90AB3PQ58FF7 597 aa9.42□□□□□ -0.9
USP54-208ENST00000461520 OLFM4Q6UX06 510 aa9.42□□□□□ -0.9
USP54-208ENST00000461520 CCDC146Q8IYE0 955 aa9.42□□□□□ -0.9
USP54-208ENST00000461520 SYNE4Q8N205 404 aa9.42□□□□□ -0.9
USP54-208ENST00000461520 FBF1Q8TES7 1133 aa9.42□□□□□ -0.9
USP54-208ENST00000461520 NECAB3Q96P71 396 aaPredicted RBP9.42□□□□□ -0.9
USP54-208ENST00000461520 CRAMP1Q96RY5 1269 aa9.42□□□□□ -0.9
USP54-208ENST00000461520 TRAIPQ9BWF2 469 aa9.42□□□□□ -0.9
USP54-208ENST00000461520 PRKRIP1Q9H875 184 aaPredicted RBP9.42□□□□□ -0.9
USP54-208ENST00000461520 CBX8Q9HC52 389 aa9.42□□□□□ -0.9
USP54-208ENST00000461520 ZNF277Q9NRM2 450 aaPredicted RBP9.42□□□□□ -0.9
USP54-208ENST00000461520 CCDC39Q9UFE4 941 aa9.42□□□□□ -0.9
USP54-208ENST00000461520 SCN4AP35499 1836 aa9.42□□□□□ -0.9
USP54-208ENST00000461520 SNED1Q8TER0 1413 aa9.41□□□□□ -0.9
USP54-208ENST00000461520 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.41□□□□□ -0.9
USP54-208ENST00000461520 FZD9O00144 591 aa9.41□□□□□ -0.9
USP54-208ENST00000461520 RNGTTO60942 597 aaKnown RBP9.41□□□□□ -0.9
USP54-208ENST00000461520 HOXB7P09629 217 aa9.41□□□□□ -0.9
USP54-208ENST00000461520 HCLS1P14317 486 aaPredicted RBP9.41□□□□□ -0.9
USP54-208ENST00000461520 GSTT1P30711 240 aa9.41□□□□□ -0.9
USP54-208ENST00000461520 IARSP41252 1262 aaKnown RBP9.41□□□□□ -0.9
USP54-208ENST00000461520 CYP27A1Q02318 531 aa9.41□□□□□ -0.9
USP54-208ENST00000461520 CDK5R2Q13319 367 aa9.41□□□□□ -0.9
USP54-208ENST00000461520 PROSER3Q2NL68 480 aa9.41□□□□□ -0.9
USP54-208ENST00000461520 SLC10A5Q5PT55 438 aa9.41□□□□□ -0.9
USP54-208ENST00000461520 OGFOD3Q6PK18 319 aa9.41□□□□□ -0.9
USP54-208ENST00000461520 COPS6Q7L5N1 327 aa9.41□□□□□ -0.9
USP54-208ENST00000461520 SMYD4Q8IYR2 804 aaPredicted RBP9.41□□□□□ -0.9
USP54-208ENST00000461520 RBM17Q96I25 401 aaKnown RBP9.41□□□□□ -0.9
USP54-208ENST00000461520 UTP14AQ9BVJ6 771 aaKnown RBP9.41□□□□□ -0.9
USP54-208ENST00000461520 DDX21Q9NR30 783 aaKnown RBP eCLIP9.41□□□□□ -0.9
USP54-208ENST00000461520 ZC3H7BQ9UGR2 993 aaKnown RBP9.41□□□□□ -0.9
USP54-208ENST00000461520 ANGEL1Q9UNK9 670 aaKnown RBP9.41□□□□□ -0.9
USP54-208ENST00000461520 PAGE1O75459 146 aa9.4□□□□□ -0.9
USP54-208ENST00000461520 ANXA1P04083 346 aa9.4□□□□□ -0.9
USP54-208ENST00000461520 ALG1LQ6GMV1 187 aa9.4□□□□□ -0.9
USP54-208ENST00000461520 GRIN3AQ8TCU5 1115 aa9.4□□□□□ -0.9
USP54-208ENST00000461520 GPBAR1Q8TDU6 330 aa9.4□□□□□ -0.9
USP54-208ENST00000461520 XAGE3Q8WTP9 111 aa9.4□□□□□ -0.9
USP54-208ENST00000461520 JDP2Q8WYK2 163 aa9.4□□□□□ -0.9
USP54-208ENST00000461520 TAF1DQ9H5J8 278 aaPredicted RBP9.4□□□□□ -0.9
USP54-208ENST00000461520 LAS1LQ9Y4W2 734 aaKnown RBP9.4□□□□□ -0.9
USP54-208ENST00000461520 CNTNAP1P78357 1384 aa9.39□□□□□ -0.91
USP54-208ENST00000461520 ZNF541Q9H0D2 1346 aa9.39□□□□□ -0.91
USP54-208ENST00000461520 ENC1O14682 589 aa9.39□□□□□ -0.91
USP54-208ENST00000461520 FOXN1O15353 648 aa9.39□□□□□ -0.91
USP54-208ENST00000461520 P4HBP07237 508 aaKnown RBP9.39□□□□□ -0.91
USP54-208ENST00000461520 ZNF252P-AS1Q0IIN9 211 aa9.39□□□□□ -0.91
USP54-208ENST00000461520 AIMP1Q12904 312 aaKnown RBP9.39□□□□□ -0.91
USP54-208ENST00000461520 TCIRG1Q13488 830 aa9.39□□□□□ -0.91
USP54-208ENST00000461520 KRT24Q2M2I5 525 aa9.39□□□□□ -0.91
USP54-208ENST00000461520 NFXL1Q6ZNB6 911 aa9.39□□□□□ -0.91
USP54-208ENST00000461520 NLRP10Q86W26 655 aa9.39□□□□□ -0.91
USP54-208ENST00000461520 LDHDQ86WU2 507 aa9.39□□□□□ -0.91
USP54-208ENST00000461520 GPC2Q8N158 579 aa9.39□□□□□ -0.91
USP54-208ENST00000461520 EMILIN2Q9BXX0 1053 aa9.39□□□□□ -0.91
USP54-208ENST00000461520 TMX4Q9H1E5 349 aaPredicted RBP9.39□□□□□ -0.91
USP54-208ENST00000461520 DBF4Q9UBU7 674 aaPredicted RBP9.39□□□□□ -0.91
USP54-208ENST00000461520 HACL1Q9UJ83 578 aa9.39□□□□□ -0.91
USP54-208ENST00000461520 PASKQ96RG2 1323 aa9.38□□□□□ -0.91
USP54-208ENST00000461520 PRNPP04156 253 aa9.38□□□□□ -0.91
USP54-208ENST00000461520 TAL1P17542 331 aaPredicted RBP9.38□□□□□ -0.91
USP54-208ENST00000461520 BMP6P22004 513 aa9.38□□□□□ -0.91
USP54-208ENST00000461520 EIF6P56537 245 aaKnown RBP9.38□□□□□ -0.91
USP54-208ENST00000461520 HNRNPUQ00839 825 aaKnown RBP eCLIP9.38□□□□□ -0.91
USP54-208ENST00000461520 ATP2B2Q01814 1243 aa9.38□□□□□ -0.91
USP54-208ENST00000461520 EAPPQ56P03 285 aaPredicted RBP9.38□□□□□ -0.91
USP54-208ENST00000461520 ZC3H12AQ5D1E8 599 aaKnown RBP9.38□□□□□ -0.91
USP54-208ENST00000461520 ABI1Q8IZP0 508 aa9.38□□□□□ -0.91
USP54-208ENST00000461520 SRCIN1Q9C0H9 1055 aa9.38□□□□□ -0.91
USP54-208ENST00000461520 VPS33BQ9H267 617 aa9.38□□□□□ -0.91
USP54-208ENST00000461520 BSDC1Q9NW68 430 aaPredicted RBP9.38□□□□□ -0.91
USP54-208ENST00000461520 CHPF2Q9P2E5 772 aa9.38□□□□□ -0.91
USP54-208ENST00000461520 ABCC4O15439 1325 aa9.37□□□□□ -0.91
USP54-208ENST00000461520 SH3TC1Q8TE82 1336 aa9.37□□□□□ -0.91
USP54-208ENST00000461520 KRTAP9-6A0A140TA67 174 aa9.37□□□□□ -0.91
USP54-208ENST00000461520 BBOX1O75936 387 aa9.37□□□□□ -0.91
USP54-208ENST00000461520 FAM87AP0C7U9 286 aa9.37□□□□□ -0.91
USP54-208ENST00000461520 ZNF853P0CG23 659 aa9.37□□□□□ -0.91
USP54-208ENST00000461520 EPHX2P34913 555 aa9.37□□□□□ -0.91
USP54-208ENST00000461520 CALD1Q05682 793 aaKnown RBP9.37□□□□□ -0.91
USP54-208ENST00000461520 PNMA8AQ86V59 439 aaPredicted RBP9.37□□□□□ -0.91
USP54-208ENST00000461520 PLBD2Q8NHP8 589 aa9.37□□□□□ -0.91
USP54-208ENST00000461520 CEP44Q9C0F1 390 aa9.37□□□□□ -0.91
USP54-208ENST00000461520 HYPKQ9NX55 129 aa9.37□□□□□ -0.91
USP54-208ENST00000461520 TRMT112Q9UI30 125 aaKnown RBP9.37□□□□□ -0.91
USP54-208ENST00000461520 ATP6V0A2Q9Y487 856 aa9.37□□□□□ -0.91
USP54-208ENST00000461520 CSADQ9Y600 493 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms